Bioinformatics Summer School 2015 Program Monday 29 th June 09:30-10:00am: Participant Arrival & Coffee Break 10:00-12:00pm: Presentation of the participants and their research interests/experiences Frédéric Lardeux, Angers University (FR) 5:00-6:00pm: Plenary Conference: 'Polio: nearly extinct but not to be ignored' Gareth Williams, Bristol University, (UK) Faculty of Arts - Amphi E (Campus Belle-Beille) 6:00-6:45pm: Opening of the Summer Schools Isabelle Richard, Dean of the Faculty of Medicine, Angers University (FR) John Webb, Vice-president for International Relations, Angers University (FR) Faculty of Arts - Amphi E (Campus Belle-Beille) From 6:45pm: Welcome Barbecue Cafeteria l Escale (Campus Belle-Beille)
Tuesday 30 th June 9:00- Warm up Session Warm up Session Wednesday 1 st July 9:00- Session 1: Statistics and classification for genomic studies Stéphane Robin, INRA, Paris (FR) Sébastien Loustau et Frédéric Proia, Angers University (FR) Session 1: Statistics and classification for genomic studies Stéphane Robin, INRA, Paris (FR) Sébastien Loustau, Frédéric Proia, Angers University (FR) 6:30pm: Visit of Angers by train Car park of the castle
Thursday 2 nd July Session 2: Clinicobiological Databases 9:00-10:00am: Introductory course Context of clinicobiological data in human genetics; the Human Variome Project; Introduction to Locus-specific Databases; nomenclature for the description of sequence variants 10:00-10:30am: Example of a locus-specific database #1 A locus-specific database for mutations in GDAP1 allows analysis of genotype-phenotype correlations in Charcot-Marie-Tooth 10:30-11:00am: Example of o locus-specific database #2 11:00-12:00pm: Roundtable A locus-specific database for mutations in OPA1 with advanced patient s ophthalmological data Dan Milea, Singapore Eye Research Institute (SG)/University Hospital of Angers (FR) Salim Khiati, Angers University (FR) Dan Milea, Singapore Eye Research Institute (SG)/University Hospital of Angers (FR) Salim Khiati, Angers University (FR) 2:00-5:00pm: Session 2 Workshop: Creating a locus specific database Salim Khiati, Angers University (FR)
Friday 3 rd July 8:45am: The bus will pick you up at 8:45pm at Couffon Pavot Residence to drive you to Nantes Session 3 and 4: Next generation sequencing (NGS) in genetics and genomics 10:00-11:00am: Introduction to Next generation sequencing (NGS) Solena Le Scouarnec, Nantes University (FR) 11:00-12:00pm: Session 3: Visit of the Genomic and Bioinformatics core-facility Richard Redon, Nantes University (FR) Audrey Bihouée, Nantes University (FR) Lunch (picnic) 2:00-5:00pm: Interactive session (4): From the raw sequences to the nonsynonymous variants : A short exome analysis Pierre Lindenbaum, Nantes University (FR) 6:00-8:00pm: City tour of Nantes 8:00-11:30pm: Free time in Nantes (The bus will pick you up at 11:30pm at Baco-Lu parking to drive you back to the student residence) Saturday 4 th July or Sunday 5 th July Atlantic Coast day(s) You will get a two-day ticket, meaning you can hop on any regional trains (TER) at given time during the week-end. You can spend the night there (organized on your own) or travel back and forth on the same day. Make sure to bring your swimsuit along!
Monday 6 th July 9:00- Session 5: Bioinformatics and Business companies Hubert Beaumont, Median Technologies, Valbonne (FR) Mohammed Bennanni, President Qualees, Paris (FR) Vincent Procaccio, Angers University (FR) Sébastien Loustau, Angers University (FR) Session 5: Bioinformatics and Business companies Hubert Beaumont, Median Technologies, Valbonne (FR) Vincent Procaccio, Angers University (FR) Sébastien Loustau, Angers University (FR) 6:30-8:30pm: Kayak session Lac de Maine Tuesday 7 th July 9:00- Session 6: Microbial metagenomics Damien Eveillard, Nantes University (FR) Lois Maignien, University of Western Brittany (FR) Session 9: Introduction to Metabolic Network analysis Workshop session #1: basics skills on Metabolic Network analysis Workshop session #2: basics skills on Metabolic Network analysis
Wednesday 8 th July 9:00-12:00pm: Session 7: Association mapping and system genetics - from GWAs to function Common Variants: the GWAs Rare variants: pooled tests Christian Dina, Nantes University (FR) Juliana Ionita Laza, Columbia University (USA) Session 7: Association mapping and system genetics - from GWAs to function Hands on GWAs Hands on rares variants Christian Dina, Nantes University (FR) Juliana Ionita Laza, Columbia University (USA) 6:30-8:00pm: Meeting industrial firms (optional) Amphi 200 Faculty of Medicine Thursday 9 th July Session 8: Optimization methods for bioinformatics 9:00-10:30am: Introduction Laëtitia Jourdan, INRIA Lille (FR) Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University (FR) 11:00- Presentation Laëtitia Jourdan, INRIA Lille (FR) Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University (FR) Lunch at l Escale Belle Beille
2:15-4:00pm: (FR) Article analysis Laëtitia Jourdan, INRIA Lille (FR) Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University 6:00 8:30pm: Olympiad SUAPS, Campus Belle Beille Friday 10 th July 9:00- Session 9: Case study and guided exercices on «Computer modeling of living systems» Constraint-based of metabolic networks Alexander Bockmayr, Berlin University (DE) 2:00-3:00pm: Session 9: Case study and guided exercices on «Computer modeling of living systems» Workshop session #3 Metabolic Networks on communities Alexander Bockmayr, Berlin University (DE) 3:30-5:30pm: Closing of the Summer Schools 2015 Amphi 200, Faculty of Medicine From 6:00pm: Visit of Jean Lurçat tapestries and farewell drinks Museum Jean Lurçat