Solid supports for the synthesis of peptides

Size: px
Start display at page:

Download "Solid supports for the synthesis of peptides"

Transcription

1 Fernando Albericio Fayna Garcia Martin Solid supports for the synthesis of peptides From the first resin used to the most sophisticated in the market ABSTRACT The most popular way to synthesize peptides is via the solidphase approach, mostly on a research scale, although progress is being made in large-scale production. The most evident example is Fuzeon, a commercial anti-hiv peptide, which is produced in multi-kilograms using a solid support for the synthesis of the fragments. Success in solid-phase peptide synthesis is heavily determined by the solid support. In this review we focus on the evolution of the solid support from the totally polystyrene-based resin used by Merrifield to the most sophisticated ones currently available on the market. These new resins offer access to previously inaccessible compounds as well as the possibility to be used in diverse applications but without losing stability. Moreover, these new supports are easy to handle. The final chapter of the review highlights the complex sequences that are difficult to achieve and the reasons for this. It then concludes by explaining the approaches that have been followed to synthesize such difficult peptides. INTRODUCTION From the first dipeptide synthesis in 1901 until now, the field of peptide synthesis has experienced considerable growth as a result of several new developments: i) The solid-support has been one of the main contributors to chemical peptide synthesis. Merrifield developed this ingenious and neat approach, which consists of using polystyrene (PS) resin as a solid matrix where the peptide chain is grown by being covalently attached at one end to the functionalized support. The solid support allows for simple stepwise syntheses, thereby avoiding a large number of individual steps. In addition, it allows a shortening of the time required and also the synthesis of previously inaccessible peptides. ii) Protecting groups, which allow a cleaner synthesis, the construction of selective disulfide bridges, and orthogonal groups, which permit new synthetic strategies and even the disruption of highly aggregated sequences. iii) The handle/linker (1), which allows cleavage of the peptide from the resin in diverse conditions and even modification of the carbonyl terminus at one s convenience. iv) New coupling reagents and additives for more efficient amide bonds, thereby permitting shorter times, better yields and non-racemization, among others. well as coupling of the consecutive amino acid. This repetitive process allows the stepwise attachment of the side-chainprotected sequence directly on the support, thereby avoiding several steps simply by ready filtration. Once the total peptide has been achieved, it is cleaved and permanent protecting groups are removed. This is followed by precipitation, characterization, purification and folding, when required (3). The success of solid-phase synthesis is strongly related to the support and its performance. The requirements to use polymeric support in this kind of synthesis include: i) uniform beads; ii) stability in variation of temperature; iii) mobile, well-solvated and reagent-accessible sites; iv) good swelling in a broad range of solvents, if applied; v) functionalized beads permitting covalent coupling of the first compound and vi) acceptable loadings (4). Finally, the resin should be chemically, mechanically and physically stable to allow ready filtration and high chemical conditions. Currently there is no general rule to decide on the most convenient solid support. However, it is important to consider the type of chemistry to be carried out during the synthesis, resin reagent compatibility, swelling solvent ratio, and the length and sequence of the desired product. When synthesizing a peptide it is also relevant to take into account several questions related to the nature of the resin, such as its uniform bead size, cross-linking, and loading. In the case of the synthesis of The solid support is made of diverse materials with improved intrinsic properties that allow more reagent diffusion, swelling in a wider range of solvents, uniform beads and an amphiphilic character. The solid support is precisely the focus of this review. MOST USEFUL RESINS FOR PEPTIDE SYNTHESIS (2) A solid-phase approach is the most popular way to synthesize peptides on small and large scales for research purposes. This is partly because this approach facilitates the production of medium-short and simple sequences with a minimum of work. Figure 1 shows how a peptide is usually constructed: it consists mostly of introducing a first amino acid conveniently protected, usually by C-terminus, to the solid matrix. The deprotection of the temporal group is then carried out, usually at the N-terminal, as difficult Figure 1. Solid-phase peptide sequences, peptide synthesis it is crucial (SPPS) to scheme. select an appropriate 29

2 resin composition (PS, polyamide, PS containing poly(ethylene glycol) (PEG), totally PEG-based, among others) (5, 6). The polymeric network of the resin can be considered in two models: the rigid support model and the co-solvent model. The former considers the resin as a compact sphere while the latter accepts the effect of the resin during reactions. A number of direct and indirect studies have been carried out to establish which of the two is the most appropriate to describe the solid support. Addressing the microenvironment within the resin, Regen studied two kinds of supports, cross-linked totally PS-based and PEG-PS polymers. After performing several chemical studies he concluded that both the PS polymer backbone and PEG groups had significant mobility; therefore the resin tends to fit the co-solvent model. This observation was corroborated by other researchers, such as Czarnik, who considered the resin not as a ball, but as a cosolvent, or Meldal who introduced PEG chains into the structure following the principle like dissolves like (7). Success in solid-phase peptide synthesis is highly dependent on the accessibility of the free amino termini of the peptidyl-resin. Association of the reactants with the solid support can influence the concerted reaction pathway and therefore the rate of the reaction. It has also been shown that peptide-resin solvation and swelling affect the efficiency of the coupling reaction in solidphase peptide synthesis. Solvation of the peptide-resin depends on the composition of the solid support, its cross-linking, the weight of the peptide chain, the sequence, the swelling solvent and the Fmoc/Boc chemistry chosen. Here we provide an overview of the most used resins and their nature. Polystyrene (PS) resin Used by Merrifield (8) for solid-phase peptide synthesis, these spherical beads are based on a chloromethylated polymer of styrene and divinylbenzene (DVB) (Figure 2). The resin (2 percent DVB, mesh beads) allows the diffusion of reagents when the polymer swells in the presence of appropriate solvents. Although Merrifield found that the reaction rates were slower in solid phase than in solution, the final result showed improvements in time and yields since several purification steps could be avoided. Taking advantage of these convenient properties, some years later Merrifield and Stewart developed and set up an instrument for the automated synthesis of peptides (Figure 3). The amount of cross-linking alters the solvation and swelling properties of the polymeric matrix. Standard crosslinking is about 1-2 percent DVB and therefore it is a high-hydrophobic resin that may affect peptide assembly. Although forty years later we can find more sophisticated supports in the market, those most commonly used are still very similar to that employed by Merrifield. Resins incorporating Poly(ethylene glycol) moieties Although PS-DVB resin has been widely used for solid-phase organic synthesis, it has been proven that the rate of incorporation of particular amino acids decreases, especially with increased peptide length. In an attempt to solve these intrinsic problems, Figure 2. Merrifield resin polymer net. Figure 3. Peptide synthesizer designed by R.B. Merrifield and J. M. Stewart (F. Garcia-Martin). poly(ethylene glycol) moiety was incorporated into the PS structure. The crucial role of the resin composition during the amide formation reaction has been extensively studied by numerous researchers, such as Czarnik and collaborators, who compared PS resin and PS cross-linked resin with distinct amounts of PEG chains (with a 40, 70 and percent PEG respectively) (9). Under identical conditions, faster kinetics was observed on PEG-PS resin: the greater the PEG content in the resin, the faster the reaction. A possible explanation for this observation is that PEG chains interfere with solvation, dielectric properties and hydrogen bonding. In this second generation of resins, many combinations of PEG chains into the resin (proportions and mode of structure) have been conceived to achieve a more convenient solid support. Herein we give a summary of the most used PEG-containing resins. Grafted PEG-PS In general terms, a PEG implant is introduced on a PS matrix while maintaining a PS core with a more hydrophilic exterior. The main handicap of this support is its lower loading and chemical stability. Figure 4 illustrates the main PS resin with PEG grafts. POE-PS (TentaGel ) POE-PS was developed by Bayer et al. and prepared by grafting ethylene oxide onto PS resin. Chemical architecture is formed by a PS web cross-linked by PEG chains and functionalized at the end of the chain (Figure 4a). These copolymers contain percent of PEG, and are mono-sized and useful for library applications (10). Tentagel shows good and uniform swelling in a wide range of solvents, from toluene to water. However, the first generation of PEG-PS grafted resins did not result in such a convenient resin because of its low loading and loss of PEG chains during strong acidic treatments, such as the TFA applied in the cleavage step. A new generation of PEG-PS resins has been developed to overcome these drawbacks. It is believed that these problems are due to the direct linkage of the benzyl from the PS to the PEG chain. Thus, greater stability and loading has been achieved by using a longer linkage and in some cases by branching it. PEG-PS Albericio and Barany developed a solid support (11) in which PEG chains of defined molecular weight were coupled by amide linkage onto a suitable amino functionalized gel-type PS resin (1 percent DVB). As shown in Figure 4b, the amine of the PS core is functionalized by a linker (usually a Nle or an Orn in the second PEG-PS generation) and the PEG chain is incorporated on it. Assembly of the peptide is performed at the end of the PEG chain, where a linker has been previously attached. A potential advantage of this grafting procedure is that the final proportion PEG:PS can be controlled. At first, PEG-PS resins had a moderate loading of mmol/g and were suitable for either Fmoc or Boc protocols. Later on, superior loadings ( mmol/g) have been obtained by introducing a branch point. 30

3 PEG/PS (ArgoGel ) This resin was produced by Argonaut Technologies and conceived as a PEG-PS resin which has all the advantages of this resin while showing improved loading. The graft component of ArgoGel is a bifunctional PEG chain attached to the PS core at its centre (Figure 4c). Branching allows the preparation of a new PEG-PS graft copolymer that doubles the loading (approximately 0.45 mmol/g) of conventional PEG-PS graft copolymers containing monofunctional PEG chains. Moreover, the use of chemically inert aliphatic ethers to join PEG chains to the polymer backbone, in contrast to a benzylic or amide-based connection, makes the resin inert to the presence of strong acids and nucleophilic reagents (12). Figure 4. PEG-PS grafted resins architecture. PEG-PS (Champion I and II) This resin was developed by Adams et al. (13), and is based on the incorporation of PEG chains onto the PS core but attaching a spacer between them to improve stability and loading. The resin is basically formed by PS grafted with 40 percent PEG (Champion I) and 60 percent PEG (Champion II), but with higher loading (0.7 mmol/g). This superior loading, which is almost twice that of a normal resin, is achieved through a urethane linkage between the PEG and the original resin (See Figure 4 d). This support has various formulations on the basis of its moiety, named Champion I and Champion II. Copolymers The main difference with the previous resin group is the introduction of PEG chains into the structure, not simply as a graft. This introduction modifies the cross-linking changes and the physicochemical properties of the solid support, but at the same time maintains the notable properties of the classical support. The main copolymerized resins are summarized and illustrated in Figure 5. PEGA This resin was developed by Meldal et al. (14) as an improvement of Sheppard s polyamide resin (15). Sheppard s polymer was developed as an alternative to hydrophobic PS resin and its main characteristic is that it mimics the peptide chain. PEGA resin is based upon the same principle but in this case poly(ethylene glycol) is its major constituent. PEG chains work as cross-linkers and as the starting point of the synthesis (Figure 5a). Furthermore, these chains also helps to give more flexibility and stability. It has high swelling properties and is suitable for enzymatic reactions despite its initially low loading ( mmol/g). In addition, the swelling of its polar solvent and its biocompatibility allow direct screening on it. Thus, this architecture clearly facilitates the penetration of large biomolecules into the macromolecular matrix in aqueous milieu. Several applications have been explored using PEGA resin, such as chemical ligation on the resin, direct screening of phosphopeptide-binding proteins as a useful technique for proteomics, direct monitoring on the resin by gel phase NMR, and biotransformation on solid support. TTEGDA-PS The features of this resin are illustrated in Figure 5b. It is a PS resin with tetra(ethylene glycol) diacrylate (TTEGDA) as crosslinker (16). It resembles a gel more than a solid support. The introduction of tetra(ethylene glycol) groups into the PS structure by copolymerization renders more uniformly functionalized supports and has the advantage of not having contaminants remaining from incomplete polymerization. Furthermore, studies comparing several cross-linked densities concluded that a 4 percent TTEGDA was the optimum balance between good swelling and good mechanical properties, similar to PS. This resin is mechanically stable, exhibits good-swelling, and presents an optimum hydrophilic-hydrophobic balance. However, for long automatic syntheses (from twenty residues and over) it still presents several problems because of packing down the gel in a glass column. As a result of backpressure, the solvent is squeezed by the pressure, thus its volume is drastically reduced and the highly solvated internal structure is destroyed. This effect is most probably due to the presence of ester bonds that confer reduced chemical stability versus PS resin with DVB as cross-linker. CLEAR The cross-linked ethoxylate acrylate resin (CLEAR ) solid support was developed by Kempe and Barany (17). As shown in Figure 5c, it is structurally characterized by a high degree of cross-linking caused by a key trivalent branched linker (> 95 percent by weight of cross-linker). It presents excellent swelling conditions, and performs well in the synthesis of difficult sequences. Moreover, in on-resin native chemical ligation it performs better than its counterparts PEG-PS and PEGA. This unique architecture shows high stability, since nonleaking of material is detected under extreme SPPS conditions. Although this resin shows high mechanical and chemical stability, it is labile in the presence of strong bases. Figure 5. Principal copolymerized solid supports for SPPS. Totally PEG-based resin The next generation of solid supports is based on a totally poly(ethylene glycol)-based resin, a more hydrophilic polymer that allows diverse applications. Its amphiphilic nature helps to achieve the synthesis of particular sequences that were not accessible previously by stepwise synthesis. Among its advantages, of relevance is high swelling in a wide range of solvents, thus increasing reactivity in coupling and deprotection steps. These favourable swelling properties, 32

4 probably also present in PEG-grafted resins, may be due to the stretched helical superstructure adopted by PEG in aqueous solution. Straight PEG was used in the 70s for synthesis, but its application in solid phase has occurred only in recent years. In the following lines the most used totally PEG-based resins are summarized. Straight PEG resin for liquid phase synthesis of peptides Step-wise assembly of peptides reversibly linked to PEG chains corresponds to a hybrid between traditional solution and solidphase approaches. The main inconvenience of solid-phase peptide synthesis is the impossibility to quantitatively control the amino acids coupled during assembly. Individual couplings are non-quantitative so erroneous sequences accumulate during the synthesis of the desired peptide. Mutter et al. developed a method which combines the advantages of solution synthesis with those of the solid-phase method. This technique consists of incorporating polyethylene glycol (molecular weight from 4000 to 20000) or other soluble supports into the carboxylic group of the first amino acid; separation can be achieved via ultra filtration or precipitation (18). Synthesis follows a solid-phase protocol with the further advantage that the intermediates can be purified during the assembly, without being cleaved from the support. Unfortunately, when ethers (Et 2 O or methyl-tertbutyl ether) or alcohols (EtOH or cold isopropanol) are used to precipitate the polymer, a number of impurities in the reaction mixture can also be precipitated. Due to the simplicity of use of this support, an exhaustive analysis of the coupling rates was carried out, providing useful information about PEG chain size (19), and compared to solution peptide synthesis. This methodology has been used for synthesis of other biopolymers such as oligosaccharides and oligonucleotides, and even for the combinatorial chemistry of small molecules. SPOCC Meldal et al. were interested in obtaining a resin that could be used for peptide synthesis and also for enzymatic reactions. PEG- PS resins were not useful for this aim, and the closest resin that could be applied in enzymatic chemistry was PEGA. However, due to the presence of amide backbone in PEGA resins, this kind of support is not compatible with other chemical reactions, such as solid-phase glycosylation. The first published attempt of this family of resin was the POEPOP (polyoxyethylene/ polyoxypropylene) copolymer, which contains only ether bonds. This resin was successfully used for the synthesis of peptides. The main problem, however, was its lability under strong Lewis acidic conditions as a result of the presence of secondary ether bonds. The next generation of Meldal resin was the SPOCC (Solid-phase organic and combinatorial chemistry) (20), which has a chemical backbone based on long-chain PEG terminally substituted with oxetane units. Thus, this resin contains only primary ether bonds and alcohol functionalities to overcome the same problem encountered by the previous one. Moreover, it retains all the swelling properties of the former PEGA. SPOCC resin is much more stable under strong conditions compared with the previous POEPOP polymer, and is suitable for general organic chemistry using parallel and combinatorial synthesis as well as for enzymatic reactions. Its main drawback is the high cost of manufacture, which implies non-attractive commercial production. ChemMatrix (CM) resin A new solid support of totally PEG-based chains is the CM, which was developed in recent years by Côté (21). As a distinctive feature, it is an amphiphilic resin that contains exclusively primary ether bonds and is highly cross-linked (See Figure 6). Thus a highly stable resin with increased loading has been obtained and has wide possibilities for application in solid-phase synthesis. The first published solid-phase peptide synthesis application using this resin was the generation of a library of short peptides (22). This resin was chosen for its biocompability, which allows screening directly on the solid support in aqueous solution. Our work using CM resin has achieved the successful synthesis of challenging peptides. This result is attributed to, among other features, the stability and amphiphilic character this resin. Evidence of Figure 6. Aminomethyl-ChemMatrix resin the superior structure. performance of this support has been certified by the success of highly structured peptide synthesis such as the HIV protease, which contains 99 amino acids, Rantes (1-68) and CCL4-L1 chemokines by combining with pseudoprolines, and in the most striking example, the synthesis of b-amyloid (1-42) (23). Moreover, the synthesis of other biomolecules, such as oligonucleotides and oligopeptides, has been achieved using CM resin. DIFFICULT PEPTIDES TO SYNTHESIZE The success of solid-phase peptide synthesis is mainly due to the high repetitive yield in the coupling reaction to the growing peptide chains. Despite these successes, difficulties in chain assembly and failure in obtaining large complex peptides have been reported (24). The main obstacles posed by difficult peptide sequences have been debated and researched. It is believed that the major features are related to i) the sequence; ii) sterically hindered amino acids; and iii) hydrogen bonding between peptidic chains and the polymeric matrix (25). Sequence-dependent factors are associated with the tendency of several residues or sequences to aggregate. Although this aggregation depends on the nature of the peptide chain, sequences containing Ala, Val, Ile, Met, Asp or Gln are prone to this effect, while secondary amino acids, such as Pro, are thought to inhibit aggregation. Sterically hindered amino acids are mainly due to the side chain or lateral protecting group. For instance, β-ramified amino acids such as Val or Thr are considered inconvenient for coupling. Moreover, sequences with sterically hindered amino acids, like alkylated α-amino, lead to very low yields of crude products. Also, several side-chain-protecting groups can affect the steric hindrance and hydrophobicity of the microenvironment. Among these factors, the contribution of hydrogen bonding is probably the most critical, and has often resulted in the impossibility of reagents to access the free α-amino group in the chain due to sudden shrinkage or insufficient swelling of the peptidyl-resin networks. The main hydrogen bonding effect in SPPS is made by peptide-polymeric backbone, and intrachain and interchain interactions in the growing peptide. Intrachain and interchain interactions are frequently sequencedependent. The former usually occur at reverse turns whereas interchain bindings arise when α-helix- or β-sheet-like structures are formed within the peptidyl-resin. Under these conditions, the peptidyl-resin affects solvation, thus limiting the diffusion of reagents into the matrix. As a result, coupling and deprotection reactions are often slow and incomplete, and the colorimetric test may give false negatives. Peptide-polymeric backbone interactions and solvation strongly contribute to the tendency to aggregate. Several studies have shown that simply changing the support allows access to previously inaccessible peptides (26). PEGcontaining resin contributes to a more hydrophilic microenvironment as well as the presence of hydrogen bonding 33

5 donor and acceptor groups within the matrix. These groups, which are in the vicinity of the growing peptide chain, could interact preferentially with the matrix, thus inhibiting the formation of ordered structures (27). Table 1 summarizes the main difficult peptides to achieve and ways to solve the problems related to interaction of the chains and peptidyl-resin. Approaches to prevent aggregation by external factors include: i) incorporating disaggregating compounds into the coupling solvent and or deprotection mixture; ii) heating during coupling; and iii) using microwave energy. In contrast, the preferred internal approaches are related to iv) incorporating moieties, as pseudoprolines or Hmb amino acids, which prevent aggregation during elongation; v) using disaggregating presequences as linkers; and vi) using PEG-containing resins or other more hydrophilic supports. Other chemical methods to achieve the desired peptide consist of native chemical ligation, convergent synthesis or O-N intramolecular acyl migration after solid-phase synthesis. ACKNOWLEDGEMENTS The work carried out in the author s laboratory was partially supported by CICYT (CTQ /BQU), the Instituto de Salud Carlos III (CB06_01_0074), the Generalitat de Catalunya (2005SGR 00662), the Institute for Research in Biomedicine and the Barcelona Science Park. REFERENCES AND NOTES 1. Even some authors tend to confuse the terms handle /linker and solid support, the term handle /linker may be used to indicate the way in which the resin has been functionalized. 2. Detailed references are available on request from the author. 3. I. Coin, M. Beyermann, Solid-phase peptide synthesis: from standard procedures to the synthesis of difficult sequences, Nature Prot. 2, pp (2007). 4. W. Van den Nest, F. Albericio, The choice of the solid support, In optimization of solid-phase combinatorial synthesis (B. Yan, A. W. Czarnik, eds.) Marcel Dekker, New York (NY, USA), pp (2001). 5. A. R. Vaino, K. D. Janda, Solid-phase organic synthesis: a critical understanding of the resin, J Comb Chem. 2, pp (2000). 6. D. Hudson, Matrix assisted synthetic transformations: a mosaic of diverse contributions. I. The pattern emerges, J Comb Chem. 1, pp (1999). 7. M. Meldal, Properties of solid supports, Meth Enzymol. 289, pp (1997). 8. R. B. Merrifield, Solid Phase Peptide Synthesis. I. The Synthesis of a Tetrapeptide, J Am Chem Soc. 85, pp (1963). 9. W. Li, X. Xiao et al., Kinetic comparison of amide formation on various cross-linked polystyrene resins, J Comb Chem. 1, pp (1999). FAYNA GARCIA MARTIN 1,2, FERNANDO ALBERICIO 1,2,3 1. Institute for Research in Biomedicine Barcelona Science Park, University of Barcelona 2. CIBER-BBN, Networking Centre on Bioengineering Biomaterials and Nanomedicine Barcelona Science Park 3. Department of Organic Chemistry, University of Barcelona Table 1. Syntheses of difficult peptides to obtain and the protocols used to achieve them. 10. E. Bayer, M. Dengler et al., Peptide synthesis on the new polyoxyethylenepolystyrene graft copolymer, synthesis of insulin B[21-30], Int J Peptide Protein Res. 25, pp (1985). 11. S. Zalipsky, J.L. Chang et al., Preparation and applications of polyethylene glycol-polystyrene graft resin supports for solid-phase peptide synthesis, React Polym. 22, pp (1994). 12. O.W. Gooding, S. Baurdart et al., On the development of new poly(styreneoxyethylene) graft copolymer resin supports for solid-phase organic synthesis, J Comb Chem. 1, pp (1999). 13. J.H. Adams, R.M. Cook et al., A reinvestigation of the preparation, properties, and applications of aminomethyl and 4-methylbenzhydrylamine polystyrene resins, J Org Chem. 63, pp (1998). 14. F-I Auzanneau, M. Meldal et al., Synthesis, characterization and biocompatibility of PEGA resins, J Pept Sci. 1, pp (1995). 15. E. Atherton, D. L. Clive et al., Polyamide supports for polypeptide synthesis, J Am Chem Soc. 97, pp (1975). 16. M. Renil, R. Pillai, Synthesis, characterization and application of tetraethylene glycol diacrylate crosslinked polystyrene support for gel phase peptide synthesis, J Appl Polym Sci. 61, pp (1998). 17. M. Kempe, G. Barany, CLEAR: A novel family of highly cross-linked polymeric supports for solid-phase peptide synthesis, J Am Chem Soc. 118, pp (1996). 18. E. Bayer, M. Mutter, Liquid phase synthesis of peptides, Nature 237, pp (1972). 19. In this kinetic study they observed that during the first coupling lower PEG molecular weight gave higher coupling rates. However, in the case of the tripeptide synthesis, using the major PEG chain (~20000 molecular weight) the highest reaction rate was achieved. 20. J. Rademann, M. Grøtli et al., SPOCC: a resin for solid-phase organic chemistry and enzymatic reactions on solid phase, J Am Chem Soc. 121, pp (1999). 21. S. Côté, New polyether based monomers and highly cross-linked amphiphile resins WO S.A. Camperi, M.M. Marani et al., An efficient strategy for the preparation of one-bead-one-peptide libraries on a new biocompatible solid support, Tetrahedron Lett. 46, pp (2005). 23. F. García-Martín, M. Quintanar-Audelo et al., ChemMatrix, a poly(ethylene glycol)-based support for the solid-phase synthesis of complex peptides, J Comb Chem. 8, pp (2006). 24. S.B.H. Kent, Chemical synthesis of peptides and proteins, Ann Rev Biochem. 57, pp (1988). 25. J. Tam, Y. Lu, Coupling difficulty associated with interchain clustering and phase transition in solid phase peptide synthesis, J Am Chem Soc. 117, pp (1995). 26. M. Delgado, K. Janda, Polymeric supports for solid phase organic synthesis, Curr Org Chem. 6, pp (2002). 27. N. Zinieris, C. Zikos et al., Improved solid-phase peptide synthesis of difficult peptides by altering the microenvironment of the developing sequence, Tetrahedron Lett. 47, pp (2006). 34

USP's Therapeutic Peptides Expert Panel discusses manufacturing processes and impurity control for synthetic peptide APIs.

USP's Therapeutic Peptides Expert Panel discusses manufacturing processes and impurity control for synthetic peptide APIs. Control Strategies for Synthetic Therapeutic Peptide APIs Part III: Manufacturing Process Considerations By Brian Gregg,Aleksander Swietlow,Anita Y. Szajek,Harold Rode,Michael Verlander,Ivo Eggen USP's

More information

2. Couple the two protected amino acids.

2. Couple the two protected amino acids. General Considerations The Strategy of Peptide Synthesis Making peptide bonds between amino acids is not difficult. The challenge is connecting amino acids in the correct sequence. andom peptide bond formation

More information

Combinatorial Chemistry and solid phase synthesis seminar and laboratory course

Combinatorial Chemistry and solid phase synthesis seminar and laboratory course Combinatorial Chemistry and solid phase synthesis seminar and laboratory course Topic 1: Principles of combinatorial chemistry 1. Introduction: Why Combinatorial Chemistry? Until recently, a common drug

More information

Part One. Introduction

Part One. Introduction Part One Introduction 3 1 The (Classic Concept of) Solid Support Fernando Albericio1,2 1 and Judit Tulla-Puche 1 Institute for Research in Biomedicine, Barcelona Science Park, 08028 Barcelona, Spain 2

More information

Dr. Rita P.-Y. Chen Institute of Biological Chemistry Academia Sinica

Dr. Rita P.-Y. Chen Institute of Biological Chemistry Academia Sinica PEPTIDE SYNTHESIS Dr. Rita P.-Y. Chen Institute of Biological Chemistry Academia Sinica 1 Solution phase chemistry -Time consuming: isolation and purification at each step -Low yield: can t drive reaction

More information

Novel Method for Solid Phase Peptide Synthesis Using Microwave Energy

Novel Method for Solid Phase Peptide Synthesis Using Microwave Energy Novel Method for Solid Phase Peptide Synthesis Using Microwave Energy Jonathan M. Collins, Michael J. Collins, Rebecca C. Steorts CEM Corporation, Matthews, NC 28106-0200, U.S.A. Presented at American

More information

Peptides: Synthesis and Biological Interest

Peptides: Synthesis and Biological Interest Peptides: Synthesis and Biological Interest Therapeutic Agents Therapeutic peptides approved by the FDA (2009-2011) 3 Proteins Biopolymers of α-amino acids. Amino acids are joined by peptide bond. They

More information

1) Technical informations. - a) How does it work? - b) Purification - c) Quality Control. 2) Standard synthesis

1) Technical informations. - a) How does it work? - b) Purification - c) Quality Control. 2) Standard synthesis 1) Technical informations - a) How does it work? - b) Purification - c) Quality Control 2) Standard synthesis - a) Standard peptides - b) Modified peptides - c) Shipment and Delivery Time - d) How to order?

More information

Focus XC. Ultimate Fully Automated Peptide Synthesizer with Sonication and Heating Options

Focus XC. Ultimate Fully Automated Peptide Synthesizer with Sonication and Heating Options Focus XC Ultimate Fully Automated Peptide Synthesizer with Sonication and Heating Options FOCUS XC AUTOMATED PEPTIDE SYNTHESIZER aapptec s Focus XC is a compact, easy to use fully automated peptide synthesizer

More information

(c) How would your answers to problem (a) change if the molecular weight of the protein was 100,000 Dalton?

(c) How would your answers to problem (a) change if the molecular weight of the protein was 100,000 Dalton? Problem 1. (12 points total, 4 points each) The molecular weight of an unspecified protein, at physiological conditions, is 70,000 Dalton, as determined by sedimentation equilibrium measurements and by

More information

IV. -Amino Acids: carboxyl and amino groups bonded to -Carbon. V. Polypeptides and Proteins

IV. -Amino Acids: carboxyl and amino groups bonded to -Carbon. V. Polypeptides and Proteins IV. -Amino Acids: carboxyl and amino groups bonded to -Carbon A. Acid/Base properties 1. carboxyl group is proton donor! weak acid 2. amino group is proton acceptor! weak base 3. At physiological ph: H

More information

A novel method for the synthesis of peptides

A novel method for the synthesis of peptides A novel method for the synthesis of peptides in solution DioRaSSP (Diosynth Rapid Solution Synthesis of Peptides) offers substantial benefits for the large-scale synthesis of peptides meeting all the specifications

More information

Overview'of'Solid-Phase'Peptide'Synthesis'(SPPS)'and'Secondary'Structure'Determination'by'FTIR'

Overview'of'Solid-Phase'Peptide'Synthesis'(SPPS)'and'Secondary'Structure'Determination'by'FTIR' verviewofsolid-phasepeptidesynthesis(spps)andsecondarystructuredeterminationbyftir Introduction Proteinsareubiquitousinlivingorganismsandcells,andcanserveavarietyoffunctions.Proteinscanactas enzymes,hormones,antibiotics,receptors,orserveasstructuralsupportsintissuessuchasmuscle,hair,and

More information

--not necessarily a protein! (all proteins are polypeptides, but the converse is not true)

--not necessarily a protein! (all proteins are polypeptides, but the converse is not true) 00Note Set 5b 1 PEPTIDE BONDS AND POLYPEPTIDES OLIGOPEPTIDE: --chain containing only a few amino acids (see tetrapaptide, Fig 5.9) POLYPEPTIDE CHAINS: --many amino acids joined together --not necessarily

More information

Ionization of amino acids

Ionization of amino acids Amino Acids 20 common amino acids there are others found naturally but much less frequently Common structure for amino acid COOH, -NH 2, H and R functional groups all attached to the a carbon Ionization

More information

Outline. Market & Technology Trends. LifeTein Technology Portfolio. LifeTein Services

Outline. Market & Technology Trends. LifeTein Technology Portfolio. LifeTein Services 1 Outline Market & Technology Trends LifeTein Technology Portfolio LifeTein Services 2 Synthetic Therapeutic Peptides More than 60 synthetic therapeutic peptides under 50 amino acids in size have reached

More information

Peptide bonds: resonance structure. Properties of proteins: Peptide bonds and side chains. Dihedral angles. Peptide bond. Protein physics, Lecture 5

Peptide bonds: resonance structure. Properties of proteins: Peptide bonds and side chains. Dihedral angles. Peptide bond. Protein physics, Lecture 5 Protein physics, Lecture 5 Peptide bonds: resonance structure Properties of proteins: Peptide bonds and side chains Proteins are linear polymers However, the peptide binds and side chains restrict conformational

More information

A. A peptide with 12 amino acids has the following amino acid composition: 2 Met, 1 Tyr, 1 Trp, 2 Glu, 1 Lys, 1 Arg, 1 Thr, 1 Asn, 1 Ile, 1 Cys

A. A peptide with 12 amino acids has the following amino acid composition: 2 Met, 1 Tyr, 1 Trp, 2 Glu, 1 Lys, 1 Arg, 1 Thr, 1 Asn, 1 Ile, 1 Cys Questions- Proteins & Enzymes A. A peptide with 12 amino acids has the following amino acid composition: 2 Met, 1 Tyr, 1 Trp, 2 Glu, 1 Lys, 1 Arg, 1 Thr, 1 Asn, 1 Ile, 1 Cys Reaction of the intact peptide

More information

How To Make A Peptide

How To Make A Peptide Peptide synthesis From Wikipedia, the free encyclopedia In organic chemistry, peptide synthesis is the creation of peptides, which are organic compounds in which multiple amino acids bind via peptide bonds

More information

The Organic Chemistry of Amino Acids, Peptides, and Proteins

The Organic Chemistry of Amino Acids, Peptides, and Proteins Essential rganic Chemistry Chapter 16 The rganic Chemistry of Amino Acids, Peptides, and Proteins Amino Acids a-amino carboxylic acids. The building blocks from which proteins are made. H 2 N C 2 H Note:

More information

Guide to Reverse Phase SpinColumns Chromatography for Sample Prep

Guide to Reverse Phase SpinColumns Chromatography for Sample Prep Guide to Reverse Phase SpinColumns Chromatography for Sample Prep www.harvardapparatus.com Contents Introduction...2-3 Modes of Separation...4-6 Spin Column Efficiency...7-8 Fast Protein Analysis...9 Specifications...10

More information

18.2 Protein Structure and Function: An Overview

18.2 Protein Structure and Function: An Overview 18.2 Protein Structure and Function: An Overview Protein: A large biological molecule made of many amino acids linked together through peptide bonds. Alpha-amino acid: Compound with an amino group bonded

More information

1 General introduction

1 General introduction General introduction Peptides and peptidomimetics _ 1 1 General introduction 1.1 Peptides and peptidomimetics umerous small and large peptides, which are sequence and length-specific polymers composed

More information

Part A: Amino Acids and Peptides (Is the peptide IAG the same as the peptide GAI?)

Part A: Amino Acids and Peptides (Is the peptide IAG the same as the peptide GAI?) ChemActivity 46 Amino Acids, Polypeptides and Proteins 1 ChemActivity 46 Part A: Amino Acids and Peptides (Is the peptide IAG the same as the peptide GAI?) Model 1: The 20 Amino Acids at Biological p See

More information

EXPERIMENT 5: DIPEPTIDE RESEARCH PROJECT

EXPERIMENT 5: DIPEPTIDE RESEARCH PROJECT EXPERIMENT 5: DIPEPTIDE RESEARCH PROJECT Pre-Lab Questions: None. 64 I. Background Information DIPEPTIDE RESEARCH PROJECT Methods developed by organic chemists for the synthesis of biopolymers have had

More information

PROTEIN SEQUENCING. First Sequence

PROTEIN SEQUENCING. First Sequence PROTEIN SEQUENCING First Sequence The first protein sequencing was achieved by Frederic Sanger in 1953. He determined the amino acid sequence of bovine insulin Sanger was awarded the Nobel Prize in 1958

More information

Protein Physics. A. V. Finkelstein & O. B. Ptitsyn LECTURE 1

Protein Physics. A. V. Finkelstein & O. B. Ptitsyn LECTURE 1 Protein Physics A. V. Finkelstein & O. B. Ptitsyn LECTURE 1 PROTEINS Functions in a Cell MOLECULAR MACHINES BUILDING BLOCKS of a CELL ARMS of a CELL ENZYMES - enzymatic catalysis of biochemical reactions

More information

How To Make A Drug From A Peptide

How To Make A Drug From A Peptide MODERN PERSPECTIVES ON PEPTIDE SYNTHESIS INTRODUCTION WHITEPAPER www.almacgroup.com The complexity of synthetic peptide products, whether as reagents used in research or as therapeutic APIs, is increasing.

More information

2010 European Amino Acid Derivatives Product Line Strategy Award

2010 European Amino Acid Derivatives Product Line Strategy Award 2010 European Amino Acid Derivatives Product Line Strategy Award 2010 Frost & Sullivan 1 We Accelerate Growth Frost & Sullivan s Global Research Platform Frost & Sullivan is entering its 50 th year in

More information

GRABBING GOLDEN. The changing role of combinatorial chemistry in drug

GRABBING GOLDEN. The changing role of combinatorial chemistry in drug GRABBING GOLDEN Medicinal chemists may soon reap the benefits of solid-phase split-and-pool combichem techniques. BY VIKTOR KRCHNAK AND COLIN DALTON The changing role of combinatorial chemistry in drug

More information

The Peptides Vol. 2: Analysis, Synthesis, Biology: Special Methods in Peptide Synthesis

The Peptides Vol. 2: Analysis, Synthesis, Biology: Special Methods in Peptide Synthesis The Peptides Vol. 2: Analysis, Synthesis, Biology: Special Methods in Peptide Synthesis Download: The Peptides Vol. 2: Analysis, Synthesis, Biology: Special Methods in Peptide Synthesis PDF ebook The Peptides

More information

Rapid Microwave-Assisted Solid Phase Peptide Synthesis

Rapid Microwave-Assisted Solid Phase Peptide Synthesis 592 SPECIAL TOPIC Rapid Microwave-Assisted Solid Phase Peptide Synthesis Rapid Máté Microwave-Assisted Solid Phase Peptide SynthesisErdélyi, a,b Adolf Gogoll* a a Department of Organic Chemistry, Uppsala

More information

Recap. Lecture 2. Protein conformation. Proteins. 8 types of protein function 10/21/10. Proteins.. > 50% dry weight of a cell

Recap. Lecture 2. Protein conformation. Proteins. 8 types of protein function 10/21/10. Proteins.. > 50% dry weight of a cell Lecture 2 Protein conformation ecap Proteins.. > 50% dry weight of a cell ell s building blocks and molecular tools. More important than genes A large variety of functions http://www.tcd.ie/biochemistry/courses/jf_lectures.php

More information

Peptide Synthesis Zheng Miao* and Zhen Cheng

Peptide Synthesis Zheng Miao* and Zhen Cheng Peptide Synthesis Zheng Miao* and Zhen Cheng 1 Department of Radiology, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, USA *For correspondence: zmiao@stanford.edu

More information

Small μmol Scale Synthesis of a Labeled Antimicrobial Peptide using Biotage

Small μmol Scale Synthesis of a Labeled Antimicrobial Peptide using Biotage Application ote A098 Small μmol Scale Synthesis of a Labeled Antimicrobial Peptide Page 1 Small μmol Scale Synthesis of a Labeled Antimicrobial Peptide using Biotage Initiator+ Alstra Introduction Labeled

More information

Built from 20 kinds of amino acids

Built from 20 kinds of amino acids Built from 20 kinds of amino acids Each Protein has a three dimensional structure. Majority of proteins are compact. Highly convoluted molecules. Proteins are folded polypeptides. There are four levels

More information

Advanced Medicinal & Pharmaceutical Chemistry CHEM 5412 Dept. of Chemistry, TAMUK

Advanced Medicinal & Pharmaceutical Chemistry CHEM 5412 Dept. of Chemistry, TAMUK Advanced Medicinal & Pharmaceutical Chemistry CHEM 5412 Dept. of Chemistry, TAMUK Dai Lu, Ph.D. dlu@tamhsc.edu Tel: 361-221-0745 Office: RCOP, Room 307 Drug Discovery and Development Drug Molecules Medicinal

More information

THE CHEMICAL SYNTHESIS OF PEPTIDES

THE CHEMICAL SYNTHESIS OF PEPTIDES TE EMIAL SYTESIS F PEPTIDES Peptides are the long molecular chains that make up proteins. Synthetic peptides are used either as drugs (as they are biologically active) or in the diagnosis of disease. Peptides

More information

T3P Propane Phosphonic Acid Anhydride

T3P Propane Phosphonic Acid Anhydride Technology StrengthS T3P Propane Phosphonic Acid Anhydride The coupling agent of the future Coupling and water removal are synthesis tools that stand at the cutting edge of purity and cost effective manufacture

More information

Short Peptide Synthesis

Short Peptide Synthesis Short Peptide Synthesis Keith ó Proinsias 8 th February 2010 Introduction Amide bond and basic amide synthesis Solution phase peptide synthesis Protecting groups required for peptide synthesis Coupling

More information

Guidance for Industry

Guidance for Industry Guidance for Industry for the Submission of Chemistry, Manufacturing, and Controls Information for Synthetic Peptide Substances Center for Drug Evaluation and Research (CDER) Center for Biologics Evaluation

More information

8/20/2012 H C OH H R. Proteins

8/20/2012 H C OH H R. Proteins Proteins Rubisco monomer = amino acids 20 different amino acids polymer = polypeptide protein can be one or more polypeptide chains folded & bonded together large & complex 3-D shape hemoglobin Amino acids

More information

4. Which carbohydrate would you find as part of a molecule of RNA? a. Galactose b. Deoxyribose c. Ribose d. Glucose

4. Which carbohydrate would you find as part of a molecule of RNA? a. Galactose b. Deoxyribose c. Ribose d. Glucose 1. How is a polymer formed from multiple monomers? a. From the growth of the chain of carbon atoms b. By the removal of an OH group and a hydrogen atom c. By the addition of an OH group and a hydrogen

More information

A Novel Bioconjugation Technology

A Novel Bioconjugation Technology A Novel Bioconjugation Technology for Assay Development and More! Presentation overview Who we are Solutions we provide for our customers Solulink s technology Linking system The Solulink advantage Applications

More information

Polystyrene with Handles. TentaGel Resins. HypoGel Resins. Preloaded Resins. Basic Polymer Supports. Glassware

Polystyrene with Handles. TentaGel Resins. HypoGel Resins. Preloaded Resins. Basic Polymer Supports. Glassware Polystyrene with Handles TentaGel Resins HypoGel Resins Preloaded Resins asic Polymer Supports Glassware 2 Resins for solid-phase Introduction INTRODUCTION Resin Types for Polystyrene Support: Properties

More information

Polymers: Introduction

Polymers: Introduction Chapter Outline: Polymer Structures Hydrocarbon and Polymer Molecules Chemistry of Polymer Molecules Molecular Weight and Shape Molecular Structure and Configurations Copolymers Polymer Crystals Optional

More information

The latest SPPS application data

The latest SPPS application data The latest SPPS application data -innovative solution for peptide chemistry- Biotage Japan Ltd. Fumio Kumakura Ph,D Biotage With more than 5,000 discovery chemistry systems installed in over 600 facilities

More information

Experimental procedures. Solid phase peptide synthesis (SPPS)

Experimental procedures. Solid phase peptide synthesis (SPPS) Electronic Supplementary Material (ESI) for Organic & Biomolecular Chemistry This journal is The Royal Society of Chemistry 214 Experimental procedures Solid phase peptide synthesis (SPPS) Solid phase

More information

Biochemistry - I. Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture-11 Enzyme Mechanisms II

Biochemistry - I. Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture-11 Enzyme Mechanisms II Biochemistry - I Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture-11 Enzyme Mechanisms II In the last class we studied the enzyme mechanisms of ribonuclease A

More information

6 Characterization of Casein and Bovine Serum Albumin

6 Characterization of Casein and Bovine Serum Albumin 6 Characterization of Casein and Bovine Serum Albumin (BSA) Objectives: A) To separate a mixture of casein and bovine serum albumin B) to characterize these proteins based on their solubilities as a function

More information

Chemical Bonds and Groups - Part 1

Chemical Bonds and Groups - Part 1 hemical Bonds and Groups - Part 1 ARB SKELETS arbon has a unique role in the cell because of its ability to form strong covalent bonds with other carbon atoms. Thus carbon atoms can join to form chains.

More information

Solid Phase Extraction Products PAGE: 1. Introduction of Solid Phase Extraction (SPE) Why Choose Nano-Micro Tech SPE

Solid Phase Extraction Products PAGE: 1. Introduction of Solid Phase Extraction (SPE) Why Choose Nano-Micro Tech SPE Solid Phase Extraction Products PAGE: 1 Introduction of Solid Phase Extraction (SPE) SPE has been used increasingly in chemical analysis and purification broadly, and become the most popular technology

More information

1 Peptide bond rotation

1 Peptide bond rotation 1 Peptide bond rotation We now consider an application of data mining that has yielded a result that links the quantum scale with the continnum level electrostatic field. In other cases, we have considered

More information

Peptide Bond Amino acids are linked together by peptide bonds to form polypepetide chain.

Peptide Bond Amino acids are linked together by peptide bonds to form polypepetide chain. Peptide Bond Peptide Bond Amino acids are linked together by peptide bonds to form polypepetide chain. + H 2 O 2 Peptide bonds are strong and not broken by conditions that denature proteins, such as heating.

More information

Plastics and Polymer Business. Properties enhancement for Plastics

Plastics and Polymer Business. Properties enhancement for Plastics News Letter Vol. 18, issue October-December, 2012 Hyperdispersants and Coupling Agents for Thermoplastics and Thermosets Solplus, Ircolplus and Solsperse hyperdispersants and coupling agents have been

More information

Unit Vocabulary: o Organic Acid o Alcohol. o Ester o Ether. o Amine o Aldehyde

Unit Vocabulary: o Organic Acid o Alcohol. o Ester o Ether. o Amine o Aldehyde Unit Vocabulary: Addition rxn Esterification Polymer Alcohol Ether Polymerization Aldehyde Fermentation Primary Alkane Functional group Saponification Alkene Halide (halocarbon) Saturated hydrocarbon Alkyne

More information

CSC 2427: Algorithms for Molecular Biology Spring 2006. Lecture 16 March 10

CSC 2427: Algorithms for Molecular Biology Spring 2006. Lecture 16 March 10 CSC 2427: Algorithms for Molecular Biology Spring 2006 Lecture 16 March 10 Lecturer: Michael Brudno Scribe: Jim Huang 16.1 Overview of proteins Proteins are long chains of amino acids (AA) which are produced

More information

H H N - C - C 2 R. Three possible forms (not counting R group) depending on ph

H H N - C - C 2 R. Three possible forms (not counting R group) depending on ph Amino acids - 0 common amino acids there are others found naturally but much less frequently - Common structure for amino acid - C, -N, and functional groups all attached to the alpha carbon N - C - C

More information

Amino Acids. Amino acids are the building blocks of proteins. All AA s have the same basic structure: Side Chain. Alpha Carbon. Carboxyl. Group.

Amino Acids. Amino acids are the building blocks of proteins. All AA s have the same basic structure: Side Chain. Alpha Carbon. Carboxyl. Group. Protein Structure Amino Acids Amino acids are the building blocks of proteins. All AA s have the same basic structure: Side Chain Alpha Carbon Amino Group Carboxyl Group Amino Acid Properties There are

More information

Chapter 5 Classification of Organic Compounds by Solubility

Chapter 5 Classification of Organic Compounds by Solubility Chapter 5 Classification of Organic Compounds by Solubility Deductions based upon interpretation of simple solubility tests can be extremely useful in organic structure determination. Both solubility and

More information

Note. Optimization of protocols for solid-phase synthesis on a flexible crosslinked support: Synthesis of [Leu 5 ]enkephalin

Note. Optimization of protocols for solid-phase synthesis on a flexible crosslinked support: Synthesis of [Leu 5 ]enkephalin Indian Journal of Chemistry Vol. 428, April 2003, pp.916-920 Note Optimization of protocols for solid-phase synthesis on a flexible crosslinked support: Synthesis of [Leu 5 ]enkephalin I M Krishna Kumar

More information

Structure of proteins

Structure of proteins Structure of proteins Primary structure: is amino acids sequence or the covalent structure (50-2500) amino acids M.Wt. of amino acid=110 Dalton (56 110=5610 Dalton). Single chain or more than one polypeptide

More information

EMMI Intensive Programme "Design, Synthesis and Validation of Imaging Probes Torino, 19-30 September 2011

EMMI Intensive Programme Design, Synthesis and Validation of Imaging Probes Torino, 19-30 September 2011 EMMI Intensive rogramme "Design, Synthesis and Validation of Imaging robes Torino, 19-30 September 2011 Basic principles and procedures of solid phase peptide synthesis Lorenzo Tei, hd Dipartimento di

More information

CEM, First in Microwave Peptide Synthesis

CEM, First in Microwave Peptide Synthesis CEM, First in Microwave Peptide Synthesis In 2002, a CEM biochemist named Jonathan Collins presented his concept of a microwave-assisted peptide synthesis system to several colleagues. Collins concept

More information

Adhesive Bonding of Natural Stone

Adhesive Bonding of Natural Stone Adhesive Bonding of Natural Stone Section I: Basics of Stone Adhesion Adhesive Theory There are many theories concerning the forces that are at work in forming an adhesive bond between two (2) different

More information

Automated Fast-Bead Synthesis of Small Peptides

Automated Fast-Bead Synthesis of Small Peptides Automated Fast-Bead Synthesis of Small Peptides Application Note 228 Joan Stevens, Ph.D., Norbert Wodke, Tim Hegeman and Kirby Reed (Gilson, Inc.) Introduction In proteomic research, the synthesis of peptides

More information

Solid-Phase Peptide Synthesis using N α -Trityl-Amino Acids. Jordi Girona 18-26, E-08034 Barcelona, Spain. planta, E-08028 Barcelona, Spain.

Solid-Phase Peptide Synthesis using N α -Trityl-Amino Acids. Jordi Girona 18-26, E-08034 Barcelona, Spain. planta, E-08028 Barcelona, Spain. Solid-phase peptide synthesis using N α -trityl-amino acids. de la Torre, B.G., Marcos, M.A., Eritja, R., Albericio, F. Letters in Peptide Sience 8, 331-338 (2002). Solid-Phase Peptide Synthesis using

More information

Amino Acids as Acids, Bases and Buffers:

Amino Acids as Acids, Bases and Buffers: Amino Acids as Acids, Bases and Buffers: - Amino acids are weak acids - All have at least 2 titratable protons (shown below as fully protonated species) and therefore have 2 pka s o α-carboxyl (-COOH)

More information

CNAS ASSESSMENT COMMITTEE CHEMISTRY (CH) DEGREE PROGRAM CURRICULAR MAPPINGS AND COURSE EXPECTED STUDENT LEARNING OUTCOMES (SLOs)

CNAS ASSESSMENT COMMITTEE CHEMISTRY (CH) DEGREE PROGRAM CURRICULAR MAPPINGS AND COURSE EXPECTED STUDENT LEARNING OUTCOMES (SLOs) CNAS ASSESSMENT COMMITTEE CHEMISTRY (CH) DEGREE PROGRAM CURRICULAR MAPPINGS AND COURSE EXPECTED STUDENT LEARNING OUTCOMES (SLOs) DEGREE PROGRAM CURRICULAR MAPPING DEFINED PROGRAM SLOs Course No. 11 12

More information

LifeTein in Industrial Production of Therapeutic Peptides. Phil Moore, PhD Director of Business Development LifeTein LLC, NJ, USA

LifeTein in Industrial Production of Therapeutic Peptides. Phil Moore, PhD Director of Business Development LifeTein LLC, NJ, USA LifeTein in Industrial Production of Therapeutic Peptides Phil Moore, PhD Director of Business Development LifeTein LLC, NJ, USA 1 Outline Market and Technology Trend LifeTein s Technology portfolio LifeTein

More information

Lecture 15: Enzymes & Kinetics Mechanisms

Lecture 15: Enzymes & Kinetics Mechanisms ROLE OF THE TRANSITION STATE Lecture 15: Enzymes & Kinetics Mechanisms Consider the reaction: H-O-H + Cl - H-O δ- H Cl δ- HO - + H-Cl Reactants Transition state Products Margaret A. Daugherty Fall 2004

More information

SOLID SUPPORTS AND CATALYSTS IN ORGANIC SYNTHESIS

SOLID SUPPORTS AND CATALYSTS IN ORGANIC SYNTHESIS SOLID SUPPORTS AND CATALYSTS IN ORGANIC SYNTHESIS Editor Professor K. SMITH, M.SC,PhD. Head of Department of Chemistry University College of Swansea Wales ELLIS HORWOOD PTR PRENTICE HALL NEW YORK LONDON

More information

PrepTip. Reverse Phase PrepTip User Guide

PrepTip. Reverse Phase PrepTip User Guide PrepTip Reverse Phase PrepTip User Guide All text, photographs and illustrations are copyrighted by Harvard Apparatus, Inc. 2004. PrepTip is a trademark of Harvard Apparatus, Inc. Harvard Apparatus 84

More information

Investigation of Solid-Phase Peptide Synthesis by the Near-Infrared Multispectral Imaging Technique: A Detection Method for Combinatorial Chemistry

Investigation of Solid-Phase Peptide Synthesis by the Near-Infrared Multispectral Imaging Technique: A Detection Method for Combinatorial Chemistry Anal. Chem. 1999, 71, 2255-2261 Accelerated Articles Investigation of Solid-Phase Peptide Synthesis by the Near-Infrared Multispectral Imaging Technique: A Detection Method for Combinatorial Chemistry

More information

MCAT Organic Chemistry - Problem Drill 23: Amino Acids, Peptides and Proteins

MCAT Organic Chemistry - Problem Drill 23: Amino Acids, Peptides and Proteins MCAT rganic Chemistry - Problem Drill 23: Amino Acids, Peptides and Proteins Question No. 1 of 10 Question 1. Which amino acid does not contain a chiral center? Question #01 (A) Serine (B) Proline (C)

More information

Patrick, An Introduction to Medicinal Chemistry 4e Chapter 13 Drug design: optimizing target interactions. Pyrrole ring N H

Patrick, An Introduction to Medicinal Chemistry 4e Chapter 13 Drug design: optimizing target interactions. Pyrrole ring N H Patrick, An Introduction to dicinal hemistry 4e hapter 13 Drug design: optimizing target interactions Answers to end-of-chapter questions 1) The pyrrole ring of DU 122290 serves to increase the rigidity

More information

Disulfide Bonds at the Hair Salon

Disulfide Bonds at the Hair Salon Disulfide Bonds at the Hair Salon Three Alpha Helices Stabilized By Disulfide Bonds! In order for hair to grow 6 inches in one year, 9 1/2 turns of α helix must be produced every second!!! In some proteins,

More information

Combinatorial Biochemistry and Phage Display

Combinatorial Biochemistry and Phage Display Combinatorial Biochemistry and Phage Display Prof. Valery A. Petrenko Director - Valery Petrenko Instructors Galina Kouzmitcheva and I-Hsuan Chen Auburn 2006, Spring semester COMBINATORIAL BIOCHEMISTRY

More information

Peptide Bonds: Structure

Peptide Bonds: Structure Peptide Bonds: Structure Peptide primary structure The amino acid sequence, from - to C-terminus, determines the primary structure of a peptide or protein. The amino acids are linked through amide or peptide

More information

Invariant residue-a residue that is always conserved. It is assumed that these residues are essential to the structure or function of the protein.

Invariant residue-a residue that is always conserved. It is assumed that these residues are essential to the structure or function of the protein. Chapter 6 The amino acid side chains have polar and nonpolar properties, and the relative hydrophobicity of the amino acid side chains is critical for the folding and stability of a protein. The more hydrophobic

More information

Synthesis of hydrophilic and flexible linkers for peptide derivatization in solid phase

Synthesis of hydrophilic and flexible linkers for peptide derivatization in solid phase Bioorganic & Medicinal Chemistry Letters 14 (2004) 161 165 Synthesis of hydrophilic and flexible linkers for peptide derivatization in solid phase Aimin Song, a Xiaobing Wang, a Jinhua Zhang, b Jan Marˇ

More information

Table of contents. Bibliografische Informationen http://d-nb.info/1006571213. digitalisiert durch

Table of contents. Bibliografische Informationen http://d-nb.info/1006571213. digitalisiert durch 1. Research scope: The role of structure rigid'tf'ication in nature and chemistry 1 2. Establishing a Dha=Tap backbone scan in order to elucidate structural properties of the N-terminusofNPY 5 2.1 Introduction.

More information

Introduction, Noncovalent Bonds, and Properties of Water

Introduction, Noncovalent Bonds, and Properties of Water Lecture 1 Introduction, Noncovalent Bonds, and Properties of Water Reading: Berg, Tymoczko & Stryer: Chapter 1 problems in textbook: chapter 1, pp. 23-24, #1,2,3,6,7,8,9, 10,11; practice problems at end

More information

Carbohydrates, proteins and lipids

Carbohydrates, proteins and lipids Carbohydrates, proteins and lipids Chapter 3 MACROMOLECULES Macromolecules: polymers with molecular weights >1,000 Functional groups THE FOUR MACROMOLECULES IN LIFE Molecules in living organisms: proteins,

More information

The peptide bond is rigid and planar

The peptide bond is rigid and planar Level Description Bonds Primary Sequence of amino acids in proteins Covalent (peptide bonds) Secondary Structural motifs in proteins: α- helix and β-sheet Hydrogen bonds (between NH and CO groups in backbone)

More information

Chemical Bonds. Chemical Bonds. The Nature of Molecules. Energy and Metabolism < < Covalent bonds form when atoms share 2 or more valence electrons.

Chemical Bonds. Chemical Bonds. The Nature of Molecules. Energy and Metabolism < < Covalent bonds form when atoms share 2 or more valence electrons. The Nature of Molecules Chapter 2 Energy and Metabolism Chapter 6 Chemical Bonds Molecules are groups of atoms held together in a stable association. Compounds are molecules containing more than one type

More information

1. COUPLING REAGENTS : Structure and acronyms

1. COUPLING REAGENTS : Structure and acronyms Coupling Reagents 1. COUPLING REAGENTS : Structure and acronyms... 2 2. CARBODIIMIDE... 3 1.a. N,N -Dicyclohexylcarbodimide (DCC)... 3 DCC/HOBt coupling experimental procedure:... 4 1.b. N-(3-Dimethylaminopropyl)-N

More information

Chapter 26 Biomolecules: Amino Acids, Peptides, and Proteins

Chapter 26 Biomolecules: Amino Acids, Peptides, and Proteins John E. McMurry www.cengage.com/chemistry/mcmurry Chapter 26 Biomolecules: Amino Acids, Peptides, and Proteins Proteins Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl

More information

Chapter 3. Protein Structure and Function

Chapter 3. Protein Structure and Function Chapter 3 Protein Structure and Function Broad functional classes So Proteins have structure and function... Fine! -Why do we care to know more???? Understanding functional architechture gives us POWER

More information

Aspects of industrial purification of peptides using large-scale chromatography. Lars Andersson and Jonas Persson

Aspects of industrial purification of peptides using large-scale chromatography. Lars Andersson and Jonas Persson Aspects of industrial purification of peptides using large-scale chromatography Introduction By Lars Andersson and Jonas Persson PolyPeptide Laboratories (Sweden) AB PO Box 30089 SE-200 61 LIMHAMN SWEDEN

More information

Exam 4 Outline CH 105 Spring 2012

Exam 4 Outline CH 105 Spring 2012 Exam 4 Outline CH 105 Spring 2012 You need to bring a pencil and your ACT card. Chapter 24: Lipids 1. Describe the properties and types of lipids a. All are hydrophobic b. Fatty acid-based typically contain

More information

THE FOLLOWING TEXT ON BIO-OIL EXTRACTION IS AN EXCERPT FROM THE FINAL TECHNICAL REPORT SUBMITTED BY HNEI TO OFFICE OF NAVAL RESEARCH UNDER GRANT

THE FOLLOWING TEXT ON BIO-OIL EXTRACTION IS AN EXCERPT FROM THE FINAL TECHNICAL REPORT SUBMITTED BY HNEI TO OFFICE OF NAVAL RESEARCH UNDER GRANT THE FOLLOWING TEXT ON BIO-OIL EXTRACTION IS AN EXCERPT FROM THE FINAL TECHNICAL REPORT SUBMITTED BY HNEI TO OFFICE OF NAVAL RESEARCH UNDER GRANT AWARD NUMBER N00014-09-1-0709, DECEMBER 2011 2.4 Novel Solvent-Based

More information

Chem 109 C Fall 2014 Armen Zakarian Office: Chemistry Bldn 2217

Chem 109 C Fall 2014 Armen Zakarian Office: Chemistry Bldn 2217 Chem 109 C Fall 2014 Armen Zakarian ffice: Chemistry Bldn 2217! http://web.chem.ucsb.edu/~zakariangroup/courses.html! 1 Amino acids: Resolution of Racemates 2 Peptides/Proteins: Peptide Bonds - - - - peptides:

More information

Myoglobin and Hemoglobin

Myoglobin and Hemoglobin Myoglobin and Hemoglobin Myoglobin and hemoglobin are hemeproteins whose physiological importance is principally related to their ability to bind molecular oxygen. Myoglobin (Mb) The oxygen storage protein

More information

This class deals with the fundamental structural features of proteins, which one can understand from the structure of amino acids, and how they are

This class deals with the fundamental structural features of proteins, which one can understand from the structure of amino acids, and how they are This class deals with the fundamental structural features of proteins, which one can understand from the structure of amino acids, and how they are put together. 1 A more detailed view of a single protein

More information

Disaccharides consist of two monosaccharide monomers covalently linked by a glycosidic bond. They function in sugar transport.

Disaccharides consist of two monosaccharide monomers covalently linked by a glycosidic bond. They function in sugar transport. 1. The fundamental life processes of plants and animals depend on a variety of chemical reactions that occur in specialized areas of the organism s cells. As a basis for understanding this concept: 1.

More information

Effects of Tg and CTE on Semiconductor Encapsulants

Effects of Tg and CTE on Semiconductor Encapsulants Effects of Tg and CTE on Semiconductor Encapsulants Dr. Mark M. Konarski Loctite Corporation www.loctite.com Abstract As the role of direct-chip-attachment increases in the electronics industry, the reliability

More information

Chapter 12 - Proteins

Chapter 12 - Proteins Roles of Biomolecules Carbohydrates Lipids Proteins 1) Catalytic 2) Transport 3) Regulatory 4) Structural 5) Contractile 6) Protective 7) Storage Nucleic Acids 12.1 -Amino Acids Chapter 12 - Proteins Amino

More information

Separation of Amino Acids by Paper Chromatography

Separation of Amino Acids by Paper Chromatography Separation of Amino Acids by Paper Chromatography Chromatography is a common technique for separating chemical substances. The prefix chroma, which suggests color, comes from the fact that some of the

More information

Lecture 13-14 Conformation of proteins Conformation of a protein three-dimensional structure native state. native condition

Lecture 13-14 Conformation of proteins Conformation of a protein  three-dimensional structure native state. native condition Lecture 13-14 Conformation of proteins Conformation of a protein refers to the three-dimensional structure in its native state. There are many different possible conformations for a molecule as large as

More information