Automation and standardisation of NIPD



Similar documents
Setting up a NIPD Biobank of maternal samples: Sample collection, Storage and DNA extraction protocols

ABSTRACT INTRODUCTION

IBGRL, NHSBT, Bristol

User guide for referring samples to the IBGRL Molecular Diagnostics Laboratory

BEIPH Final Report. QCMD 2010 Hepatitis B Virus DNA (HBVDNA10A) EQA Programme. William G MacKay on behalf of QCMD and its Scientific Council July 2010

Automated Nucleic Acid Extraction WorkStation Faster, cleaner,

AnDiaTec GmbH & Co. KG Leibnizstr Kornwestheim. Telefon Telefax

The Power of Next-Generation Sequencing in Your Hands On the Path towards Diagnostics

MagExtractor -Genome-

CLINICAL PRACTICE GUIDELINE THE USE OF ANTI-D IMMUNOGLOBIN FOR THE PREVENTION OF RHD HAEMOLYTIC DISEASE OF THE NEWBORN

SAMPLE. Accuracy in Patient and Sample Identification; Approved Guideline. This guideline describes the essential elements of systems and processes

Non-invasive prenatal detection of chromosome aneuploidies using next generation sequencing: First steps towards clinical application

Use of cffdna to avoid administration of anti-d to pregnant women when the fetus is RhD-negative: implementation in the NHS

European registered Clinical Laboratory Geneticist (ErCLG) Core curriculum

Molecular Assessment of Dried Blood Spot Quality during Development of a Novel Automated. Screening

Labor im Zentrifugenröhrchen zur dezentralen patientennahen Diagnostik

Content Sheet 10-1: Overview of External Quality Assessment (EQA)

The Blood Donor BIOBANK

Welcome to Pacific Biosciences' Introduction to SMRTbell Template Preparation.

Genolution Pharmaceuticals, Inc. Life Science and Molecular Diagnostic Products

RealStar HBV PCR Kit /2012

Detection of PepMV and ringtest results

Bioruptor NGS: Unbiased DNA shearing for Next-Generation Sequencing

General information. Methods 2.1 Sample and DNA handling Please find attached an excel table where details

Clinical Studies Abstract Booklet

Nazneen Aziz, PhD. Director, Molecular Medicine Transformation Program Office

FULLY AUTOMATED AND VALIDATED HIGH VOLUME DNA EXTRACTION USING CHEMAGEN MAGNETIC BEADS BASED KITS

Best Practices for Maintaining Quality in Molecular Diagnostics Gyorgy Abel, MD, PhD

Validation Guide for the DNA IQ Reference Sample Kit for Maxwell 16 Printed in USA. 9/06 Part# GE181

CST

the central lab of choice for investigative sites and sponsors

Automation in genomics High-throughput management of biological samples and nucleic acids. Valentina Gualdi Operational Scientist PGP

Validation. Richard Haggas Quality Manager, Blood Transfusion Department Leeds and Bradford Teaching Hospitals

SMF Awareness Seminar 2014

Maxwell 16 Blood DNA Purification System

Description: Molecular Biology Services and DNA Sequencing

Healthcare Science Programme Guide

molis vt molis vt channel molis vt communicator molis vt billing molis vt insight Laboratory Management System

a part of Top three shortlisted nominee for the Roche Excellence in Laboratory Award Arab Health 2014

ONLINE SUPPLEMENTAL MATERIAL. Allele-Specific Expression of Angiotensinogen in Human Subcutaneous Adipose Tissue

QIAamp DNA Mini and Blood Mini Handbook

The Thermo Scientific KingFisher Family

SOLID PHASE REVERSIBLE IMMOBILIZATION HIGH PERFORMANCE NUCLEIC ACID ISOLATION AND PURIFICATION

Red blood cell transfusions in the Netherlands Towards (very) low use

UltraClean Soil DNA Isolation Kit

Easy Collection and Extraction of BioSamples Ahlstrom GenCollect Ahlstrom GenCollect Color

Current Status in Non-Invasive Prenatal Detection of Down Syndrome, Trisomy 18, and Trisomy 13 Using Cell-Free DNA in Maternal Plasma

Authentication of Basmati rice using SSR-PCR and QIAxcel Advanced

Coding and Billing for HIV Services in Healthcare Facilities

Introduction to next-generation sequencing data

Quantitative HBV DNA measurements and the management of infected health care workers

GUIDELINE FOR BLOOD GROUPING AND RED CELL ANTIBODY TESTING IN PREGNANCY

FOR REFERENCE PURPOSES

Thermo Scientific icap 7000 Series ICP-OES. Low cost ICP-OES analysis high quality data

VALIDATED MOLECULAR SOLUTIONS FOR CYTOGENETICISTS. PRODUCTS AND METHODOLOGIES Not for distribution in the USA

Introduction to Post PCR Cleanup

DNA IQ TM Casework Pro Kit for Maxwell 16 A Validation Study

Digital Health: Catapulting Personalised Medicine Forward STRATIFIED MEDICINE

Gain efficiency in your process development with ÄKTA avant

Automated Lab Management for Illumina SeqLab

EN ISO accreditation for blood gases

Search Coordinator Certificate

A complete workflow for pharmacogenomics using the QuantStudio 12K Flex Real-Time

How To Use An Enzymatics Spark Dna Sample Prep Kit For Ion Torrent

Printgroove JT Suite. The complete print process fast, simple and reliable. Applications Printgroove JT Suite

Blood Biobanking Chances and Risks. The Bavarian Red Cross Blood Donor Biobank

Enhancing PCR & STR Experiments. Sharron Ohgi Senior Research Associate sohgi@biomatrica.com

Thermo Scientific ClinQuan MD Software For In Vitro Diagnostic Use. Confidence in Results With Data Integrity

Quantitative Imaging In Clinical Trials Using PET/CT: Update

A test your patients can trust. A company you know and trust.

WITHIN THE MARKETING EFFICIENCY CLOUD FROM BRANDMAKER

PreciseTM Whitepaper

Company Profile. Competencies. Product Specialties. Unique Selling Point

CUSTOM DNA SEQUENCING SERVICES

Gene Expression Assays

HISTO TYPE SSP Immunogenetic Diagnostics. Robust and fast - validated Taq Polymerase included

ISTQB Certified Tester Expert Level Certification Extension Policy

Viral Hepatitis APHL survey report

Institutional Partnership Program

ISO and Quality Management in the IVF Lab. C. Brent Barrett, Ph.D., HCLD Laboratory Director Boston IVF

Coding guide for routine HIV testing in health care settings

RealLine HCV PCR Qualitative - Uni-Format

Genomic DNA Extraction Kit INSTRUCTION MANUAL

Recommended Procedures for the Extraction of RNA. Jan Pedersen USDA, APHIS, VS, National Veterinary Services Laboratories, Ames, IA 50010

14/12/2012. HLA typing - problem #1. Applications for NGS. HLA typing - problem #1 HLA typing - problem #2

Data Analysis for Ion Torrent Sequencing

Reimbursement for Molecular Diagnostics

Agencourt RNAdvance Blood Kit for Free Circulating DNA and mirna/rna Isolation from μL of Plasma and Serum

User s Manual. Bacteria Genomic DNA Kit. ExiPrepTM Bacteria Genomic DNA Kit K Version No.: 3.0 ( )

Transcription:

Automation and standardisation of NIPD Tobias J. Legler Dept. of Transfusion Medicine, University Medical Center Göttingen Certified according to DIN ISO 9001:2000 SAFE FINAL GENERAL ASSEMBLYin TARRAGONA 29 th /30 th May 2008

SAFE: RHD NIPD Standardisation Questions 1. Which reference material of a higher order can we use to determine the analytical sensitivity of RHD NIPD? 2. Is there a reference measurement procedure? 3. Which is the diagnostic sensitivity and specificity of the most promising (automated) technology platforms compared with the current gold standard serology? 4. How can we test repeatability, consistency and uniformity in an external Quality Assurance scheme? 5. Which internal control can we use for RHD NIPD screening?

RhD/SRY reference material of higher order Evelyn Tait Standards, Standardisation and Current Limitations of NIPD

Reference measurement procedure Workshop QIAampresults DSP Virus published Kit (Qiagen, Hilden,Germany), Legler Cat. TJ No. and 60704 SAFE partners: Prenat Diagn 2007;27:824-9 Mean pg/ml 4000 Details of protocols published Legler TJ and 3000SAFE partners: Methods Mol Biol. 2008;444:209-18 Protocols available 2000 online http://www.safenoe.org/protocols 1000 0 3 DSP MINI MINI MINI MINI MB HP MINI MINI MINI CST MIDI HP: High Pure PCR Template Preparation Kit, MINI: QIAamp DNA Blood Mini Kit, CST: CST genomic DNA purification Kit, MB: in-house magnetic bead separation method, MIDI: QIAamp DNA Blood Midi Kit Pool Nucleic acid extraction with specific magnetic Bead-Based 2 capture: critical parameters Legler TJ et al.: Manuscript submitted MD thesis completed and submitted Zhong Liu 2008 1

RHD NIPD Technology platforms assessed (larger scale) QIAamp Blood Kit (Qiagen, Hilden, Germany) n=851 Rouillac-Le Sciellour C et al. Mol Diagn 2004:8:23-31 MagnaPure (Roche Diagnostics, Basel, Switzerland) n=1257 Van der Schoot CE et al. Transfus Clin Biol 2006;13:53-7 Ampliprep (Roche Diagnostics) n=545 Minon JM et al. Transfusion 2008;48:373-381 MDx BioRobot (Qiagen) n=1869 Bristol, UK: Finning K et. al. BMJ 2008;336:816-8. QIAamp DSP Virus Kit (Qiagen) n=1022 Chemagen Separation Module 1 (Chemagen, Baesweiler, Germany) Göttingen, Germany: Müller SP et al. Transfusion (in press)

Fetal DNA Yield (n=620, RHD exon 7) Müller SP et al.: Transfusion (in press) DSP Virus Kit: 6 6973pg/ml, median 101pg/ml Chemagen Magn. Sep. Mod.1: 43 34.418pg/ml, median 703pg/ml

Diagnostic Sensitivity/Specificity NIPD Sensitivity [%] Specificity [%] Serology (Müller) 99.5 >99.7 Chemagen (Müller) 99.8 98.1 MDx (Finning) 99.7 94.0 MagnaPure (van der Schoot) 99.5 98.9 Ampliprep (Minon) >99.7 99.5

Quality Assurance scheme The International Blood Group Reference Laboratory (IBGRL, SAFE partner no. 26)* in Bristol, UK, (http://ibgrl.blood.co.uk/) organizes RHD NIPD Workshops on behalf of the International Society for Blood Transfusion (ISPD) and the International Council for Standardization in Haematology (ICSH) every two years since 2004 (2006, 2008). Voluntary testing for other bloodgroups (RhC/c, Kell) is possible.

SAFE: RHD NIPD Standardisation workflow 1. A reference measurement procedure was determined 2. The reference protocol was adapted in collaborative multicenter experiments and discussion workshops 3. A reference material of a higher order for the determination of the analytical sensitivity was agreed in a workshop 4. Diagnostic sensitivity and specificity were determined for the most promising technology platforms in large-scale singlecentre studies 5. A Quality Assurance scheme for gauging levels of repeatability, consistency and uniformity was established 6. Agreement was obtained in a discussion workshop that the internal control is not mandatory for RHD NIPD screening.

Anti-CD19 (20x) (negative=green) Anti-CD3 (20x) (positive=red)

Cost-effectiveness (WP6) data kindly provided by A. Haverkamp Costs for RHD NIPD in small scale 40.01 Costs for RHD NIPD in large scale 24.11 Break-even Price NIPD vs. General antenatal anti-d 24.49 RhD related costs now in Germany per pregancy 119.72 RhD related costs with NIPD 120.71

Conclusions The consensus process was facilitated by travel grants, wet workshop grants, confidential agreements, and biobanking grants from the European Commission. SAFE stimulated a lot of collaborative actions, research and spreading of excellence Ongoing of funding is appreciated

Sina Müller, Sibylle Damme Britta Severitt, Michael Köhler Iris Bartels, Günther Emons Werner Stein, Kai Gutensohn Stan Urbaniak, Evelyn Tait Sylvia Armstrong Fisher Paul Metcalfe IBGRL/ISBT EQA scheme: Kirstin Finning, Geoff Daniels SAFE Partners: Ellen van der Schoot, Aicha Ait Soussan, Sinuhe Hahn Peter Sedelmayr, Neil Avent Acknowledgment Funding from the European Commission for the Special Non-invasive Advances in Fetal and Neonatal Evaluation (SAFE) Network of Excellence (LSHB-CT-2004-503243), for which this study was partially funded, is gratefully acknowledged.