Training course of microbial resources information management and utilization for developing countries

Transcription

1 The Report of Training Course Training course of microbial resources information management and utilization for developing countries At Institute of Microbiology, China Academy of Science (MCAS), Beijing, China. September, 2 nd -15 th 2014 By Dr. Bundit Fungsin Thailand Institute of Science and Technological Research (TISTR) 1

2 Training course of microbial resources information management and utilization for developing countries in China. Personal introduction I have a good opportunity to participate in the training course of Training course of microbial resources information management and utilization for developing countries at MCAS, Beijing, during September 2-16, I am Dr. Bundit Fungsin, senior research officer of Bioscience Department, Thailand Institute of Scientific and Technological, Thailand (TISTR). Bioscience Department, consisted of 2 sections, one is biotechnology laboratory and the another is culture collection which named as TISTR culture collection, or Bangkok. TISTR culture collection was established in 1976 as the name of Bangkok MIRCEN the first culture collection in Southeast Asian countries, which initiative budget funded by UNESCO, however, that supported fund was terminated and instead by Royal Thai government and our own income. It is very fruitful for me to participate in this course that I can gain more field of knowledge in information management of cultures that can be applied in our work at TISTR culture collection. Thanks to MCAS for give me of a good chance to join in this course. 2

3 Name of my culture collection TISTR Culture Collection Bangkok MIRCEN ABSTRACT WFCC-MIRCEN World Data Center for Microorganisms (WDCM) has arranged the training course on Training Course of Microbial Resources Information Management and Utilization for Developing Countries during September 2-15, 2014 in Beijing for aiming to promote of sharing and utilization of microbial information connecting around the world among the developed and developing countries. The training course program that contain of informative lectures in many fields of basic and advance in microbiology which also. The main training program are focusing in data management of microorganisms in lecture and practice sessions. Those of all training program are superbly useful to our work for handling of culture collection management. The participants of the training course from culture collection organization around the world consisted of 23 persons from 16 countries namely, Argentina, Brazil, Ecuador, India, Iran, Kazakhstan, DRP Korea, Malaysia, Morocco, Philippines, Sri Lanka, Hungary, Senegal, South Africa, Thailand, and China. I come from TISTR culture collection or Bangkok MIRCEN, which is a section in Bioscience Department, Thailand Institute of Scientific and Technological Research (TISTR). I have a good chance to join with the training course that I can gain more knowledge in many field of microbiology, particularly in 3

4 microbial resource information management and utilization for applying at my culture collection in Thailand. Key words: Training course, Information Microbial Resource Information Management, Culture collection management, TISTR culture collection Training Course of Microbial Resources Information Management and Utilization for Developing Countries. Training course in details: Training course title :Training Course of Microbial Resources Information Management and Utilization for Developing Countries. Hosted by WFCC-MIRCEN World Data Center for Microorganisms (WDCM) CODATA Task Group on Advancing Informatics for Microbiology (TG-AIM) Organized by World Federation for Culture Collections (WFCC) United Nations Educational, Scientific and Cultural Organization(UNESCO) The purpose of the training course. The purpose of the training course to help the staff of the participant countries culture collections thoroughly acquire knowledge on microbial culture collection 4

5 and taxonomic experiment skills, learn about the development trend and technical advancement in the field of microbiological informatics, learn to manipulate microbial resource databases and their management platforms, and master other informational technique as well. Place: Institute of Microbiology, China Academy of Science (MCAS), Beijing. Period: September 2 nd -16 th Participants of the training course 23 persons from 16 countries. Training Course of Microbial Resources Information Management and utilization for developing Countries No Name Organization Country Field of activity Facebook 1 Ahmed Idris Hassen Agricultural Research Council (ARS-PPRI) South Africa Applied Microbiologist HassenA@arc.agric. za Ahmed Idris rajeshfungi@gmail.c 2 Rajesh-Kumar Kunhiraman Chandandukkam Agharkar Researh Institue National fungal Culture Collection India (NFCCI) India Mycologist om rajeshkumar@aripu ne.org Rajesh Kumar (Rajforu) musliyana@upm.ed 3 Musliyana Mansor University of Putra Malayisa (UPM) Malaysia Microbiologist u.my musliyana@gmail.co m Musliyana Mansor Javier Carvajal Pontificia Universidad Catoloca del Equador Ecuador Biotechnologist ejcarvajal@puce.ed u.ec 5 Dhiraj Dhotre National Centre for Cell science India Bioinformatics dhiraj@nccs.res.in National Center for 6 Krommavut Nongnuch Genetic Engineering and Biotechnology Thailand Database management Krommavut.non@bi otec.or.th Kromma vutnong (BIOTEC) 5

6 7 Micaela Tosi Banco Nacional de microorganismos (BNM) Instituto de Investigaaciones en Argentina Biociencias Agricolas y Ambientales (INBA) CONICET-UBA 8 Jayant Khire National Chemical Laboratory India Microbiologist jm.khire@ncl.res.in 9 Farzaneh Azizmohseni 10 Kairty Almagambetov 11 Sarojini Fernando 12 Tarik Aanniz 13 Bundit Fungsin 14 Brigita Konya 15 Ursela Bigol 16 O Myong Gon 17 Kyong Min 18 Elizabeth Harmmyy Takagi mohseni@irost.ir Persian Type Culture Iran Microbiologist fazizmohseni@yaho Collection o.com RSE Republican collection of Microoranisms of Science Committee of Ministry of Education and Science Rubber research Institute of Sri Lanka Centre National pour la Recherche Scientitifique et Technique (CNRST) Thailand Institute of Scientific and Technological Research (TISTR) Budapest University of technology and Economics (BUTE) Environment and Biotechnology Division, Industrial Technology Development Institute Korean Culture Collection State Academy of Sciences Repubilc of Director of Kazakhstan Collection remkz@list.ru Seri Lanke Plant thpsfernando@yaho pathologist o.com Microbiologist/ Morocco molecular aanniz@cnrst.mo biology Thailand Yeast Curator bundit@tistr.or.th Hungary Chemical konyabrigitta@gmail Eng./Environme.com nt Eng. Philippines Biochemistry upgbigol@yahoo.co m DRP Korea Curator of arirangip@star-co.n Collection et.kp DRP Korea? arirangip@star-co.n et.kp harummyy@ial.sp.g Instituto Adolfo Lutz Brazil microbiologist ov.br Mangalore, Marine maiti.b@nitte.edu.i 19 Biswajit Maiti Nitte University India biotechnologist n Tarik aanniz Harummyy biswajitmaiti 6

7 20 Dioumacor Fall 21 Mamdadou Gueye 22 Chengyun Li Senegalease Institue for Agricultural Research (ISRA) University of Sine Saloum Kaolack (USSK) Shandong Academy of Science Senegal Senegal Soil Microbiology ahoo.fr ra.sn om China Microbiologist Source : Data from the compliment of Dr. Farzaneh Azizmohseni, Iran Schedule of the training program Date Time Contents Lecturer Opening ceremony Building TRUST Literature and practically & DrPhilippe Desmeth 3 Sept Necessary Legal Policy for culture collections WDCM introduction Dr. Juncai Ma Evolving Perspectives on Marine Genetic Dr. Lyle Glowka Resources Management of biological resource in Korea Dr. TaeEun Jin The Nagoya Protocol : Compliance Dr. Geoff Burton 4 Sept Characterization of bacterial strains for Taxonomic purpose Cha How to da classical taxonomic study of fungi Dr. Man Cai Dr. Youzhi Wang Visit CGMCC (China General Microbiological Culture Collection Center) Dr.Youzhi Wang Meeting of Revitalization of MIRCEN Annotation and Integrated retrieval of Microbial Prof. Hideaki Sugawara 5 Sept. Genome sequences Data practice Prof. Hideaki Sugawara 7

8 Microbial genome Analysis: SLIVA/ MLST Dr. Chen Chen Data practice Dr. Chen Chen 9 Sept WFCC Global Catalogue of Microorganisms (I) Dr. Wu Linhuan Presentations and Group Discussion Prof. Juncai Ma Biodiversity: Management and Risk Assessment Prof. Mamados Gueye 10 Sept WDCM databases: WFCC homepage, CCINFO and reference strain MS. Zhang Jianyuan Data practice Ms. Sun QingLan Data standards of microbial resources Dr. Wu Linhuan Data practice Dr. Wu Linhuan WFCC Global Catalogue of Microorganisms (II) Dr. Wu Linhuan 11 Sept Data practice Dr. Wu Linhuan WDCM Analysis of Bio-resources citations Dr. Wu Linhuan Data practice Ms. Sun QingLan BOLD mirror Dr. Liu Di 12 Sept Discussion and Database Practice Dr.Lui Di Microbial genome annotation pipeline Dr.Liu Li Data practice Dr. Lui Li Bioinformatics Resource in CBI- databases, data Dr. Kong Lei 15 Sept analysis and visualization platforms Data Practice Dr.Kong Lei Closing ceremony TISTR Culture Collection TISTR Culture collection was established in 1976, as the first culture collection in the Southeast Asian countries which was previously named as Bangkok MIRCEN. TISTR culture collection is one of 2 sections in 8

9 Bioscience Department which consisted of Applied microbiology laboratory and TISTR culture collection. In the initiative period the culture collection was supported for funding by UNESCO, however in the presence, the supporting by UNESCO was terminated, therefore the presence supporting funds are from the Royal Thai government and our own income. TISTR culture collection has hold of microbial strain number nearly 4,000 strains which including of bacteria (1190 strains), Yeast (566 strains), filamentous fungi (455 strains) and microalgae (1000 strains). The roles of TISTR culture collection are firstly as the national level are the main culture collection in Thailand, secondly to catalysis at national and regional collaborations and thirdly as the core center and focal point for Thailand network on culture collection (TNCC) or Thailand Biological Resource Center (TBRC) as the presence. The main tasks of TISTR culture collection as preservation and distribution of cultures, providing for training course in short term technical and on the job training program and microorganisms. 9

10 Pictures of training course activity Picture of TISTR Culture Collection China Academy of Science, Beijing, Place for Training Course 10

11 Meeting group of revitalization of MIRCEN Meeting group of revitalization of MIRCEN 11

12 Training group visit CGMCC Training group visit CGMCC 12

13 Training group visit CGMCC Presentation of TISTR Culture Collection 13

14 Participants attend the Training Lecturer My photograph in front MCAS building 14

15 Suggestion on WDCM work. The World Data Center for Microorganisms, WDCM have superbly carried on the management of microorganism information systemically. WDCM also is providing of proper programs for handling to collect of all microbial data. Those program are workable, function very well and easily to use for accessing to all microbial strains. I am so admire to WDCM for those kind of works that have done and progress very well. I have not yet found any difficulty to use the tools or programs to proceed to collect of all microbial data. I am so appreciated to the works that was delicate by WDCM. Comments or suggestion on the training courses. I think I have a good opportunity to join the training program Training Course of Microbial Resources Information Management and Utilization for Developing Countries in MCAS. The training course was excellently provide for everything such as the training program, keynote speakers, lecturers, the residence of very nice hotel and all expense during staying for the training course. I have gained a lot of new knowledge on the other fields that I have not so proficient namely, the data management of culture, the world wide information management and networking. Those of new knowledge and experience I do believe that those can be applied to improve or develop in our culture collection working process absolutely. In addition, I also have a good 15

16 chance to get to know the other friends who conduct in culture collection around the world. Suggestion on further cooperation between WDCM and your collections. The further cooperation between WDCM with TISTR culture collection, in my opinion I do believe in the further cooperation and intend to have the further cooperation with WDCM in many ways as follows. 1. The cooperation in microbial information management. 2. The cooperation in culture collection management. 3. The cooperation in doing some research projects in Biotechnology. 4. The cooperation in some short-term technical training or on the job training program. Acknowledgements I would like to express my sincerely thanks to WFCC-MIRCEN World Data Center for Microorganisms (WDCM), CODATA Task Group on Advancing Informatics for Microbiology (TG-AIM), World Federation for Culture Collections (WFCC), United Nations Educational, Scientific and Cultural Organization (UNESCO) for kindly organized and hosted of the training course of Training Course of Microbial resources Information Management and Utilization for Developing Countries. Also I would like to thank to Institute of Microbiology, China Academy of Science (MCAS) for hosting of the training course. Last but not least I would like express my sincerely thanks to Director 16

17 of WDCM, Prof. Dr. Jun Cai Ma to give me a good chance to participate the training course that is very fruitful for me to join the training course, also thanks to Dr. Wu Linhuan and Dr. Zhang Jianyuan for their kind help and providing in several concerned issues for me to overcome the training course. 17