20.1 rganic hemistry An Introduction to nomenclatures, structures and reactions Dr. Fred mega Garces hemistry 201 Miramar ollege 1 rganic hemistry
utline rganic hem and the arbon atom Atoms in rganic ompounds; Number of bonds Representing rganic ompounds Family Tree and Formula Prefixes and suffixes Degrees of arbon Isomers Alkyl Group IUPA nomenclature Substituents Alkenes and Alkynes... geometric isomers Aromatic compounds and nomenclature Functional Group 3 rganic hemistry
What is rganic hemistry? rganic hemistry: Study of carbon containing compounds. Everything else is considered inorganic. ver 30 million chemicals from 120 known elements. 800 thousands are inorganic the rest are organic chemicals. Why are there so many organic compounds? 4 rganic hemistry
The magic arbon atom Difference between organic and inorganic is -atom ability to form very long chain Inorganic compound will become unstable after with 12 or more atoms. -atoms ability to form very strong covalent bond means molecules can possess 100 or more atoms 5 rganic hemistry
Evolution of rganic hemistry an man artificially create a living animal from chemicals? - magnitude of question concerning organic compound Prior to 1828, organic compounds can only be obtained from living organism Fredrick Wohler prepared urea, a chemical in urine (an organic compound) N 4 l + AgN g N 2 --N 2 + Agl 2 N N 2 Now a days the bulk of organic compounds is manufactured in the lab. 6 rganic hemistry
Source of rganic ompound rganic chemicals isolate from nature. Nature has her huge laboratory and is constantly synthesizing chemicals through biosynthesis. Today we can manufacture these same chemicals in the lab Ethanol Mescaline affeine Tetrahydrocannabinol T 7 rganic hemistry
Lewis Dot Structure: Number of bonds for nonmetal atom Lewis Dot Structure and VSEPR: revisited N X Val. e - 1 4 5 6 7 # Bonds 1 4 3 2 1-4 N 3 2 -l 8 rganic hemistry
Forms of arbons arbons with single bond : Methane, 4 Tetrahedral 109.5 sp 3 arbons with double bonds ethene, 2 6 Trig. planar 120 sp 2 arbons with triple bonds Ethyne 2 2 Linear 180 sp 9 rganic hemistry
Structure - Ways of presenting organic ompounds onsider: Ethanol and dimethylether 2 6 Molecular formula - indicate type and number of atoms 2 6 2 6 Structure formula - shows connectivity of atoms in a compound Ethanol Dimethylether ondense formula - shows connecting group of atoms in a compound Ethanol, 3 2 Dimethylether, 3 3 Shorthand notation - shows hydrocarbon as "R" and functional group as is. Ethanol R- Dimethylether R--R Stick (Skeleton) form - shows hydrocarbons as lines with functional group Ethanol Dimethylether Isomers - ompounds that have the same formula but different structures Ethanol and dimethylether have the same formula but are different compounds and therefore possesses different properties Ethanol is the drinkable alcohol, while dimethyl ether was used as an anesthetic. 10 rganic hemistry
Functional Group Name -Suffix group Example 1 Aliphatics -ane, -ene, -yen 2 Alcohol -ol 3 Ether - ether 4 Aldehydes -al 5 Ketones -one 6 arboxylic acid -oic acid 7 Ester -ate 8 amine -amine 9 amide -amide,,,, propane, propene, proyne = propanol R R', ethylpropylether R R R R R R N R' R' R' N R' R' R', propanal, propanone, propanoic acid, methyl propanoate N, triethyl amine N, N-methylpropamide 11 rganic hemistry
rganic ompounds; the Family Tree. rganic ompounds ydrocarbons eteroatoms Aliphatics Alkane Alkene Alkyne cyclo Aliphatics Aromatic 3 3 N 12 rganic hemistry
The Alkanes Alkanes n 2n+2 ydrocarbons with only single bonds Methane 4 Ethane 2 6 Propane 3 8 Butane 4 10 Pentane 5 12 13 rganic hemistry
Degree of arbon 3 2 3 3 3 3 14 rganic hemistry
Degree of arbon 3 a) primary carbons, 1 - carbons bonded to only one other carbon 2 b) secondary carbons, 2 - carbons bonded to two other carbons c) tertiary carbons, 3 - carbons bonded to three other carbons d) quaternary carbons, 4-3 3 3 3 carbons bonded to four other carbons 15 rganic hemistry
Prefix and the Number of arbons # of Molecular Formula Prefix Alkane name Structure and isomers group name 1 4 meth- methane 4 methyl 2 2 6 eth- ethane ethyl 3 3 8 prop- propane propyl, i-propyl 4 4 10 but- butane butyl, iso-butyl, sec-butyl, tert-butyl 5 5 12 pent- pentane pentyl,, 6 6 14 hex- hexane etc... - 7 7 16 hept- heptane - 8 8 18 oct- octane - 9 9 20 non- nonane - 10 10 22 dec- decane - 16 rganic hemistry
Isomers Isomers are molecules with the same chemical formula but different structural formula. Pentane ( 5 12 ) n-pentane, iso-pentane, neo-pentane exane ( 6 14 ) n-hexane 2-methylpentane 3-methylpentane 2,3-dimethylbutane 2,2-dimethylbutane 17 rganic hemistry
Alkyl group (in naming scheme) Alkyl group - An important idea in the naming scheme is the group of atoms attached to a carbon chain. These have yl - suffix. methane g methyl First 5 alkyl groups and their isomers:. ethane g ethyl. 1. Methyl 2. Ethyl 3. Propyl: n-propyl, isopropyl 2 3 2 3 2 3 3 4.Butyl: n-butyl, sec-butyl, iso-butyl, tert-butyl 2 2 2 3 3 2 3 3 2 3 3 3 3 5. Pentyl: n-pentyl, sec-pentyl, iso-pentyl, neo-butyl (Assignment, write the stick figures of these alkyl groups 18 rganic hemistry
Rules of the game: Alkane ( n 2n+2 ) IUPA Nomenclature 1. Find the longest continuous chain of carbon atoms. Assign this chain as the parent name. 2. Determine the substituents (groups) attached to the parent chain 3. Assign attachment position of group to main chain by starting at end closest to substituent group (or lowest number position).* 4. Identical groups attached to the main chain are designated with prefixes. 2-di, 3-tri, 4-tetra, 5-penta 5. Different groups attached to main chain are written in alphabetical order. 6. Alkyl halides: alogen atoms (group) are designated as halogen prefix. F - Fluoro, l-hloro, Br- Bromo, I- Iodo 7. Alkyl groups (see previous page) The numbering scheme should be chosen such that the sum of the position in which group are attached add up to the lowest sum. http://www2.chemistry.msu.edu/faculty/reusch/virttxtjml/nomen1.htm 19 rganic hemistry
IUPA nomenclature, an example onsider the following hexane compound: eptane ( 7 16 ) 1. Pentane 2. Methyl 3 2 3. arbon # 2 & # 3 4. 2,3 = position methyl = group pentane = parent name 5. Two methyl, g dimethyl 6. Name: 2,3-dimethylpentane 20 rganic hemistry
ommon substituents Alkyl Methyl Ethyl Propyl: normal(n)-propyl, iso(i)-propyl Butyl: normal(n)-butyl, iso(i)-butyl, sec(s)-butyl, tert(t)-butyl alogens Fluoro (F), hloro (l), Bromo (Br), Iodo(I) thers Nitro (N 2 ), ydroxyl (), cyano (N), 21 rganic hemistry
Alkenes and Alkynes Alkenes n 2n Alkynes n 2n-2 ydrocarbons with multiple bonds - Ethene, 2 4 - Ethyne, 2 2 - Propene, 3 6 - Propyne, 3 4 Note: If there is more than one multiple bond g poly unsaturated i.e., 22 rganic hemistry
More on Alkenes Geometric Isomers is 2-butene Trans 2-butene an t rotate the double bond which makes these molecules unique compounds or specifically, Geometric isomers. Life example: 11-cis-retinal g all trans retinal hν R Visual pigment (rhodopsin) dark with enzyme R Signals optic nerve cell 23 rganic hemistry
Nomenclature: Alkenes and Alkyne more rules of the game: Alkene ( n 2n ) -ene (suffix) 1. - ene suffix for alkenes 2. Main chain must include the double bond, the number one carbon is the carbon closest to the double bond. 3. position of double bond indicated by prefix numbering location. 4. For multiple double bonds : di = 2 double bonds tri = 3 double bonds 2-propyl-1-pentene 2-methyl-hepta -1,3,5-triene Alkyne ( n 2n-2 ) -yne (suffix) 1. - yne suffix for alkynes 2. Nomenclature rules are similar to that of alkenes 3-ethyl-4-methyl-1-hexyne 24 rganic hemistry
1. Monosubstituted Aromatics: nomenclature a. group benzene N 2 Br l 2 3 nitrobenzene chlorobenzene bromobenzene ethylbenzene b. special names: phenol toluene aniline benzaldehyde 2. Two substituted groups - use prefix for position 3 N 2 X X o (ortho) 5 1 3. Three substituted groups m(meta) p(para) 4 3 2 - requires # scheme (lowest position scheme) 4. Benzene as a group - phenyl 5 X 1 4 3 2 25 rganic hemistry
Functional Group Name -Suffix group Example 1 Aliphatics -ane, -ene, -yen 2 Alcohol -ol 3 Ether - ether 4 Aldehydes -al 5 Ketones -one 6 arboxylic acid -oic acid 7 Ester -ate 8 amine -amine 9 amide -amide,,,, propane, propene, proyne = propanol R R', ethylpropylether R R R R R R N R' R' R' N R' R' R', propanal, propanone, propanoic acid, methyl propanoate N, triethyl amine N, N-methylpropamide 26 rganic hemistry
rganic: Examples What is the IUPA names of the following alkanes: Draw the condensed structural formulas and the stick form for the following i) 2,4-dimethyl-nonane ii) 3-methyl-4,4-diethyl-trans-2-heptene iii) 1-ethyl-4-methyl-cyclohexane: Identify the functional group for each compound: N 2 3 N 3 3 N N 2 3 27 rganic hemistry