StAR PROPOSAL Transition to Nano



Similar documents
A. Proposal Title: Energy Management System. B. Point Person and Contact Information:

B. Coauthors David C. Yen, SEB; Izabella Lokshina, MMI; Hua Zhong, MMI; and Jing Yang, MMI

Molecular Biology Techniques: A Classroom Laboratory Manual THIRD EDITION

The Techniques of Molecular Biology: Forensic DNA Fingerprinting

Montgomery County Community College BIT 123 Techniques and Instrumentation for Biotechnology 4-3-3

BB 493/593 Biochemistry Laboratory Molecular Techniques 1 Fall 2015 (3 credits)

Crime Scenes and Genes

VLLM0421c Medical Microbiology I, practical sessions. Protocol to topic J10

Application Guide... 2

Objectives: Vocabulary:

BioS 323: Molecular Biology Laboratory. Fall Semester CRN3636 Tuesday & Thursday 2PM to 5PM 3068 SEL

COMMUNITY UNIT SCHOOL DISTRICT 200. Course Description

DNA Sequencing Troubleshooting Guide.

Building Bridges: The Link Between Strategic Planning and Budgeting

DNA Fingerprinting. Unless they are identical twins, individuals have unique DNA

Thermo Scientific DyNAmo cdna Synthesis Kit for qrt-pcr Technical Manual

Procedures For DNA Sequencing

FORENSIC SCIENCE COURSE DESCRIPTION

Introduction To Real Time Quantitative PCR (qpcr)

Rapid Acquisition of Unknown DNA Sequence Adjacent to a Known Segment by Multiplex Restriction Site PCR

FIVS 316 BIOTECHNOLOGY & FORENSICS Syllabus - Lecture followed by Laboratory

Introduction. Preparation of Template DNA

Title: Protein Isolation and Identification in Genetically Modified Food

FORMAL PROPOSAL FOR A NEW DEGREE PROGRAM and DISTANCE LEARNING DELIVERY (Program is New and Institution Currently Offers Distance Learning Programs)

ID kit. imegen Anchovies II. and E. japonicus) DNA detection by. User manual. Anchovies species (E. encrasicolus. sequencing.

Description: Molecular Biology Services and DNA Sequencing

The College of Liberal Arts and Sciences

Part III. Self-Study Report Template

Curriculum Development & Procedures

Career Development Resource [CDR] Educational Leadership in a Department of Surgery: Vice Chairs for Education

2.1.2 Characterization of antiviral effect of cytokine expression on HBV replication in transduced mouse hepatocytes line

9. The ad hoc joint committee drafts a formal program implementation proposal. (See Attachment B for a description of the contents of this document.

Life Sciences Institute BCCC

Essentials of Real Time PCR. About Sequence Detection Chemistries

A STUDY ON THE EFFECTIVENESS OF PEER TUTORING AS A TEACHING METHOD IN HIGH SCHOOL BIOTECHNOLOGY LABS. June Camerlengo. Santa Fe High School

Introduction to Proteomics 1.0

Beginner s Guide to Real-Time PCR

IIID 14. Biotechnology in Fish Disease Diagnostics: Application of the Polymerase Chain Reaction (PCR)

Seattle Campus. Office of Planning & Budgeting FY2016 Budget Development Campuses, Colleges and Schools

CCR Biology - Chapter 9 Practice Test - Summer 2012

Appendix 2 Molecular Biology Core Curriculum. Websites and Other Resources

Troubleshooting Sequencing Data

Budget Analysis Instructions

Guide to using the Bio Rad CFX96 Real Time PCR Machine

TEACHING POSITIONS AVAILABLE IN BIOLOGY UNIVERSITY OF SAN FRANCISCO SPRING 2014

Biotechnology Careers

NimbleGen DNA Methylation Microarrays and Services

Mir-X mirna First-Strand Synthesis Kit User Manual

Cary 100 Bio UV-Vis Operating Instructions 09/25/2012 S.V.

FORMAL PROPOSAL FOR A NEW DEGREE PROGRAM and DISTANCE LEARNING DELIVERY (Program is New and Institution Currently Offers Distance Learning Programs)

PROVISIONAL SHEET FOR GRADUATE STUDENT. *Or 9 credit hours of courses in discipline approved by Advisory Committee

Genomic DNA Extraction Kit INSTRUCTION MANUAL

it s all about Choices S H R P School of Health Related Professions Physician Assistant Program

Introductory Biotechnology for High School Teachers - UNC-Wilmington

DEPARTMENT OF PHYSICAL SCIENCES

ASSESSMENT PLAN: Criminal Justice Program

RevertAid Premium First Strand cdna Synthesis Kit

Real-Time PCR Vs. Traditional PCR

HBV Quantitative Real Time PCR Kit

Humber College Institute of Technology & Advanced Learning. Program Advisory Committee. Procedure Manual

Course Curriculum for Master Degree in Medical Laboratory Sciences/Clinical Biochemistry

Data Analysis for Ion Torrent Sequencing

ONLINE BACHERLOR OF SCIENCE MEDICAL DIAGNOSTIC IMAGING

Faculty of Technology B. Tech. Bio Technology. SEMESTER II(R 2013) BT6211 Biochemistry Laboratory Requirements for a batch of 30 students

Validating Microarray Data Using RT 2 Real-Time PCR Products

Using Digital Photography to Supplement Learning of Biotechnology. Methods

Application Details Manage Application: Textbook Transformation Grant

OCCUPATIONAL ASSOCIATE DEGREE (OAD) TEMPLATE

The RNAi Consortium (TRC) Broad Institute

Lecture 13: DNA Technology. DNA Sequencing. DNA Sequencing Genetic Markers - RFLPs polymerase chain reaction (PCR) products of biotechnology

General information. Methods 2.1 Sample and DNA handling Please find attached an excel table where details

RT-PCR: Two-Step Protocol

FIVE- YEAR MASTER OF BUSINESS ADMINISTRATION

D. Student and Academic. Academic Scheduling and Timetabling

Biology 3A Laboratory: Enzyme Function

Texas Higher Education Coordinating Board New Doctoral Degree Proposal

Dual Degree Program Course Requirements

Forensic DNA Testing Terminology

Transcription:

StAR PROPOSAL Transition to Nano Title Page General Proposal Information A. Proposal Title: Transition to Nano: Acquisition of a UV/Vis Spectrophotometer B. Point Person and Contact Information: Nancy Bachman, 322 Science 1, x3061 bachman@oneonta.edu C. Department(s)/Unit(s): Biology Department D. Amount Requested: $9,900 Proposal Summary We propose to obtain a replacement UV/visible spectrophotometer with dual capabilities for measuring samples in standard and nanoscale format. This equipment will be used by our Biology major core course in Genetics (BIOL 212), in student research projects (BIOL 299 and 399), in faculty research, and in general lab preparation and support. We currently have a standard UV/Vis spectrophotometer (Milton Roy Model 601), obtained in the 1990s, which is out of order, and may not be repairable. Acquisition of this instrument will enable us to mostly dedicate an instrument to applications in the BIOL 212 Genetics laboratory.

Proposal Section I Narrative A. Proposal significance and objectives. The goal of this proposal is to acquire a replacement for an ailing spectrophotometer currently used for faculty and student research, and for general lab preparation in Biology. Rather than replace the unit with a standard spectrophotometer, we propose to obtain a dual system that adds capability for measuring small volumes (1-5 microliters). Possible purchase options include a ThermoFisher Nanodrop (ND-2000c) at $11,300 or an IMPLEN Nanophotometer P-Class at $9,900. This spectrophotometer would assist in accomplishing course objectives in BIOL 212, particularly in training students in new genetic technologies. Currently 3-4 sections of BIOL 212 (a core lecture/laboratory course in Biology) are being offered annually, for a total of 72-96 students. This instrument will be used in BIOL 212 for a 5-week project lab on DNA technologies to quantitate DNA samples for polymerase chain reaction. As students finish their DNA isolation procedure in week 2, they will each utilize this instrument to determine the concentration of their DNA solution, so they can plan subsequent experiments for weeks 3 and 4. Students will gain experimental skills in this lab with isolating DNA, quantitating DNA, preparing dilutions, setting up in vitro DNA reactions (PCR and restriction digests), and with agarose gel electrophoresis for DNA fragment size analysis. B. Contribution to the SP2010: This proposal will focus on item (1) teaching, learning, and scholarship of the 2010 Strategic Plan. We propose to add an essential equipment item needed for quantitating samples, preparing and adjusting stock solutions, and for small scale (1-10 tube) assays. Currently faculty comprise the main users of this equipment; this proposal will facilitate more student use of the equipment in the context of a core Biology course. C. Linkage to any of the following priorities: This proposal addresses the priorities of improving experiential learning opportunities for students and supporting efforts to maintain academic quality and rigor. Currently it is logistically difficult to quantify DNA concentration in the BIOL 212 teaching laboratory; students have typically needed to use an instrument in the research lab or the instructor has had to carry out the procedure on behalf of the students. D. Impact on operational efficiency and effectiveness. This proposal would positively impact efficiency and effectiveness. Currently we are accommodating a large number of students in genetics laboratory sections. Acquiring a spectrophotometer that could be mainly installed in the teaching laboratory (room 302) will enable the instructor to better prepare and organize laboratory components and give students students a better training experience. It will also reduce the need for weekly equipment movement and associated wear and tear. E. Opportunity for collaboration. The instrument is reasonably small in profile and can potentially be used for projects pertaining to teaching or research in Biology or in collaboration with faculty in Chemistry.

F. If applicable, description of how your unit's assessment process contributed to the decision to submit this request. Does not apply. G. How the activity will be assessed, using measurable, documented outcomes. BIOL 212 students will be given a worksheet introducing them to DNA quantitation methods and use of the spectrophotometer. Students will then use the instrument for the measurements and for preparing dilutions to use in the next procedure. The following week in lab, a survey will be administered to assess student s familiarity with the instrumentation and with calculations relevant to the instrument readings. H. Implementation strategy and timeline. In phase 1, our goal is to acquire the spectrophotometer and install the operating software on an available PC. This would occur in the summer 2013. In phase 2, we will gain experience with the unit for different applications in the research laboratory (room 3) over the summer months. In phase 3, we will relocate this instrument to room 302 for use during the academic year 2013-2014 in the BIOL 212 lab and provide abbreviated instruction sheets, so the instrument can be used by students. Laboratory curricula and assessment documents for the DNA quantification procedure will be revised to be better suited to students engaged in using the instrumentation. I. Additional information, if necessary. Not applicable. Section II Funding Request B. See attached StAR Budget Template; IMPLEN Nanophotometer P-Class at $9,900 Section III Consultation

StAR Appendix A The Chief Information Officer has reviewed this proposal and verified potential costs as it relates to technology: The Associate Vice President for Facilities has reviewed this proposal and verified potential costs as it relates to facilities: The Budget Director has reviewed this proposal and verified potential costs: The Senior Executive Employee Services Officer has reviewed this proposal and verified potential costs as it relates to human resources: [ ] No t Applicable Other consultation (be specific):

FY12/13 StAR Proposal Budget Template Proposal Title: Transition to Nano: Acquisition of a UV/Vis Spectrophotometer Point Person and contact information Name: Nancy Bachman Campus Phone: 436 3061 Campus e mail: bachman@oneonta.edu Department/Unit: Biology Budget Detail please enter whole dollars; enter fractions of positions in decimals (e.g. 1/2 time = 0.50) Number of Recurring 1 time Costs by year Total 1 time Use of Funds Description Positions (ongoing) FY2013 14 FY2014 15 FY2015 16 Costs Personnel Costs: Ongoing Salaries (PSR) $0 Temporary Salaries (Temp Service) $0 Student Employment (Student Temp Service) $0 Other Than Personnel Costs (OTPS) and Campus Recharges: Materials & Supplies $0 Travel (not related to Professional Development) $0 Contractual Services $0 Professional Development $0 General Equipment IMPLEN Nanophotometer P Class at $9,900 $9,900 $9,900 Contracts related to Equipment Maintenance $0 Campus Storehouse $0 Campus Telephone $0 Campus Mail $0 Campus Print Shop $0 Capital Costs renovation $0 Capital Costs new construction $0 Total Costs: 0.00 $0 $9,900 $0 $0 $9,900 Other Funding Sources: New Funds (i.e. projected revenue generation) Savings Reallocation of funds from existing resources (include account number, funding source) Projected Amount Available: Total Projected Other Funding Sources: $0