A GENERAL APPROACH TO CALCULATING ISOTOPIC DISTRIBUTIONS FOR MASS SPECTROMETRY

Size: px
Start display at page:

Download "A GENERAL APPROACH TO CALCULATING ISOTOPIC DISTRIBUTIONS FOR MASS SPECTROMETRY"

Transcription

1 International Journal of Mass Spectrometry and Ion Physics, 52 (1983) Elsevier Science Publishers B.V., Amsterdam - Printed in The Netherlands 337 A GENERAL APPROACH TO CALCULATING ISOTOPIC DISTRIBUTIONS FOR MASS SPECTROMETRY JAMES A. YERGEY Middle Atlantic Mass Spectrometry Fucidity, Johns Hopkins School of Medicine, 725 North Worfe Street, Baltimore, MD (U.S.A.) (Received 28 March 1983) ABSTRACT Fundamental principles for obtaining mass spectral isotopic distributions are applied to a general computer program which can be used to calculate and present in tabular and graphic form the isotopic contributions for any molecular formula. A unique feature is the retention of the isotopic distribution, exact mass, and absolute abundance for all individual peaks at each mass. Special considerations have been made for the large number of isotopic combinations which occur for many higher mass compounds. The computer program accepts the input of a molecular formula followed by interactive input of a number of parameters which affect the final presentation of the theoretical distribution profile. INTRODUCTION Recent developments in desorption ionization techniques have stimulated growth in the mass spectrometric analysis of molecules with molecular weights between 1000 and daltons (middle molecules). Field desorption of polystyrene oligomers [l-3] as well as fast atom bombardment [4-61 and 252Cf plasma desorption [7] of bovine insulin are examples of recent progress in the field. In general, mass spectrometric techniques which are capable of analyzing middle molecules have focused upon obtaining molecular weight information for the molecules of interest. As molecular weight increases, molecular ion distributions of many compounds are no longer dominated by a single peak as observed at masses below 1000 daltons, but are complex distributions spread over many mass units 181. Abundances of monoisotopic mass ions become vanishingly low, and each peak at a given nominal mass contains numerous isotopic contributions whose separation requires a resolution better than 1 in lo6 [8]. The available algorithms describing the calculation of isotopic distributions for mass spectrometry which have been reported in the literature [ /83/$ Elsevier Science Publishers B.V.

2 338 as well as the discussions included in mass spectrometry textbooks [ have not addressed the representation of the complex distributions which occur in the middle molecule region. Earlier calculations were limited in their presentation of the data [9] or their ability to deal with the entire periodic table of elements [lo]. Most of the remaining algorithms El l- 161 allow for polyisotopic elements and present the calculated data as bar plots, but sum all of the contributing peaks at each nominal mass. Carrick and Glocking [ 171 describe a program especially designed for calculating distributions of organometallic compounds which retains the information about the individual peaks at each mass unit, but limits the molecules to five atoms each for three elements at most. The focus of this paper is the application of the fundamental principles for obtaining mass spectral isotopic distributions to a general computer program which can be used to calculate and present the isotopic contributions for any molecular formula, retaining the,isotopic distribution, exact mass, and absolute abundance of all individual peaks at each mass. Special considerations have been made for the large number of isotopic combinations which occur for many higher mass compounds. The computer program accepts the input of a molecular formula followed by interactive input of a number of parameters which affect the final presentation of the theoretical distribution profile. PRINCIPLES Mass spectral isotopic distributions can be calculated by expansion of a binomial expression for relatively small molecules or for molecules containing only elements with two isotopes. However, a rigorous treatment which can be applied to any molecular formula involves expansion of a polynomial expression. The isotopic distribution for a given molecule is described by the following product of polynomials 1151 ( a,+a,+a,+...)m(b.+bz+b3...) (cl+c,+c,+...)... (1) where a,, a,, a3, etc., b,, b,, b,, etc., and c,, c2, c3, etc., represent the individual isotopes of the elements in the molecule, and the exponents m, n, o, etc., are the number of atoms of each element present in the molecule. The terms which result from the expansion of each polynomial can be used to describe the isotopic contributions, exact masses, and absolute abundances for each element s contribution to the molecule. As an example, an expression describing all isotopic permutations of the pep tide molecule glucagon ( C, 53 H,,,N,,O,,S, m.w. = 3482) is given by (12, + 13q153(lH +2H)224(14N + 15~)42(16~ IS~)~O (32s + 33s + 34s 4 3%) (2)

3 339 If the polynomial for oxygen is expanded and the like terms collected, one resulting term would be ,,170, 801, where the coefficient is equal to the number of times the term appeared in the expansion. Like terms can be collected, in this application, since only the number distribution of the isotopes can be derived from a mass spectral peak, not the position of each isotope in the molecule. The contribution of each isotope is described by the subscripts of the expansion term. The exact mass ( ) and absolute abundance (1.518 X 10T3) for this permutation can be calculated from isotopic masses and relative abundances. It should be noted that preserving the isotopic contributions in the calculation permits the demonstration that another expansion term for the oxygen polynomial (1225 r60,, *0,) differs in mass by only 5 p.p.m. ( ) from the above example. The example also indicates that usually negligible isotopes such as I70 begin to have real contributions in the middle molecule mass range. Finally, this example illustrates the large number of permutations which occur when dealing with high mass compounds. If the product of polynomials in eqn. (2) are expanded with regard to the position of each atom there would be (2)153(2>224(2)42(3)50(4)1 = 3.9 X 10r5 individual terms generated, which when collected to yield the like terms would still result in 7.9 X IO9 unique permutations. The large number of permutations generated for high mass compounds, coupled with the desire to preserve isotopic information concerning each permutation while including all isotopes in the calculation, necessitates that the program directly calculate only the unique permutations for each element. This is in contrast to calculation methods that expand each polynomial, followed by collection of like terms [9-163, which requires an excessive amount of computer time when applied to large molecules. An additional means of reducing the number of permutations and thereby the calculation time, is to stop the calculation of permutations for each element when all permutations having an absolute abundance greater than a user-defined threshold have been determined. Different means of applying the threshold can be understood by examining Table 1, which contains the first ten unique permutations generated by the expan$ion of the carbon polynomial ( 2 C + l3 C) 153 from eqn. (2). A commonly employed method to determine a threshold is to stop the calculation after a given number of permutations have been calculated [ 14,151. This method is satisfactory for small,molecules containing elements whose most abundant isotope is also the lightest isotope, since the third or fourth peak in the distribution is almost always ( 1% of the first and most abundant peak. However, Table 1 illustrates that as the number of atoms of a given element becomes relatively large, the distribution shifts in a way that makes this method of determining a threshold invailid. A better method is to include only those permutations

4 34-o TABLE 1 Distributions, abundances, and masses for the first ten expansion terms of ( C+ 3C) 53 *C 13C Absolute Exact abundance mass whose abundance is greater than some absolute value. This method may also become invalid for higher molecular weight compounds, since there are so many permutations that the absolute abundance of even the most intense permutation can become very small (-c 0.01). Therefore, a threshold which can be applied to any molecular formula must be based on a percentage of the most abundant permutation s absolute abundance; this method is used in the program described. The absolute value of the threshold will be based on the current permutation with the greatest abundance, and since the most abundant peak will usually change during the course of the calculation, the absolute value of the threshold will also change. The absolute abundances for each permutation can be described by the following combinational equation where n is the number of atoms of the element, rl, r,, I-~, etc., are the abundances of each isotope and a, b, c, etc., are the number distribution of the atoms in a given permutation [21]. Returning again to the example given for eqn. (2) of the expansion of the oxygen polynomial (I60 + I O)5o of glucagon, it can now be shown that the absolute abundance of the 160,7 70, 80, term is derived from the following equation (50)! A = (47)!(2)!(l)! (r16)47tr17)2(r18)1 by substituting into eqn. (3) the number of atoms of oxygen (50) and the number distribution (47, 2, 1) of these atoms in this particular permutation. (3) (4)

5 341 Calculation of the ratio of factorials yields the coefficient of the expansion term, which is The large number of atoms encountered in middle molecules requires an alternative approach to the calculation of each abundance since the large number of multiplication operations required by eqn. (3) for each abundance calculation would introduce serious computational errors, and require excessive calculation time. If the absolute abundance of any two permutations are divided by each other and the terms collected, the following equation is generated A 2- _A (4(b,)!(c,)!.-* ( )tc12-p,)( p-y pyc,, (a,)!(b,)!(c,)!... r1 r2 r3.** (5) where subscripts denote the two different permutations. The program calculates the abundance of the first permutation using eqn. (3) and then proceeds by basing each subsequent abundance on that of the previous permutation, according to eqn. (5). The example in eqn. (4) would then be described by A _-A (47)!(3)!(o)! ( )(47--47)~ 2- (47)!(2)!(l)! 16 r17 > - ( 118 )(1--o) (6) or A2 = 3A1(57rh3) which bases the abundance of the permutation ( A2) on that of the previous term 160d717 O, O, (A,). The total number of multiplication and division operations is greatly reduced using this formula, thereby reducing computational errors and saving substantial calculation time. ALGORITHMS The program which calculates and displays the molecular ion distributions consists of a main module (EXMASS) and four subroutines, which are outlined in the following paragraphs. PARAMETER statements at the beginning of each section of the program allow the operator to modify the common block array sizes easily, in order to accommodate vastly different types of molecules, e.g., polystyrene, II = 1000 (CS004H80,0), a large biomolecule such as insulin (C,,, H,,,N6507,S,), or an organometallic (Sn,C,,H,,), while still keeping the overall core requirement below 32K words. A molecular formula is input within subroutine DATAIN as elemental symbols which follow periodic table abbreviations, accompanied by the number of atoms of each element present in the molecule. The formula is decoded, and the exact mass and relative abundances of each isotope for elements in the formula are read from a disk file. The disk file presently 0)

6 342 contains all naturally occurring isotopes of all stable elements, but can easily be modified to include isotopically-enriched species. An auxiliary program (UPDATE) is used to update information on the disk file which contains isotopic masses and abundances for each element. This routine can be used to input new elements, and to list, modify, or delete existing isotopic information, but must be run independently of program EXMASS. All unique permutations of each element are generated within subroutine PERMUT by a set of nine nested DO loops. The first permutation contains all atoms in the first isotope. The number of atoms in the first isotope are decremented and the remainder placed in the second isotope, forming a new permutation. The number in the second isotope is then decremented, placing the remainder in isotope three, etc. The loops are executed only to the level corresponding to one less than the number of isotopes for the element, therefore accommodating any element with ten or fewer isotopes. As each permutation is generated its absolute abundance is calculated and compared to the maximum abundance for that element. If the abundance is greater than the selected threshold, the isotopic distribution, absolute abundance, and exact mass of that permutation are saved. When appropriate, the maximum abundance for the element is also updated_ If too many permutations are generated for a particular element, as defined by PARAMETER MXPERM, subroutine RESET is used to reset the threshold, reduce the number of permutations, and inform the operator of the change in threshold. If no permutations are saved for a given number of atoms in the first isotope, any further decrementing of this number can only lead to permutations that will not be saved, and the calculation is therefore terminated. In subroutine FORMULA the permutations for each element are combined with the permutations for all other elements, generating complete molecular formulae. The permutations for the first element are saved as the initial combinations, and as the permutations for each successive element are completed they are combined with the existing combinations. This procedure accomplishes the multiplication of each successive polynomial described in eqn. (1) to complete the calculation of the isotopic distributions. Each combination is stored as a pointer to the isotopic distribution, or permutation, for each element, along with the exact mass and absolute abundance of the combination. The same threshold used in generating permutations is again applied to the combinations, and is reset, if necessary, according to the value of PARAMETER MXPEAK. After all elements have been permutated and combined into their final formulae, the combinations are ordered by increasing mass. The output of the program consists of two tables and a plot, which are generated within the main program module. The first table contains the isotopic distributions of each element for all combinations above threshold,

7 343 along with the corresponding exact mass and absolute abundance. A second table summarizes the input data and calculated data, including nominal, monoisotopic, average, and most abundant masses. This table also includes a list of exact masses, relative abundances, p.p.m. spread, and multiplicity for integer mass groupings of the peaks in the first table. Finally, a plot is generated from a Gaussian distribution of the integer mass groupings. The resolution of the peaks in the plot is designated by the user, thereby allowing the user to compare more readily the distribution with experimental data. A bar plot is superimposed on the Gaussian distribution for clarity if the user-defined resolution is less than half the mass of the molecule. Program EXMASS and accompanying subroutines are written in FOR- TRAN IV, and consist of 1547 lines of code, including 805 comment statements. Most statements also contain an internal comment. Program UPDATE is also written in FORTRAN IV, and consist of 318 lines of code, of which 132 are comments. All disk I/O and dialog are accomplished by Data General RDOS FORTRAN cqmmands, which are readily converted to other operating systems. Dialog is designed for a Tektronix Model 4010 CRT, and output can be sent to either the CRT or to a hard copy device such as the Versatec Model 8OOA Printer/Plotter. Kratos DS-55 plot software is used in the present configuration but it can be readily exchanged for packages such as Tektronix Plot-10 software. The core size demanded varies with PARAMETER settings, but can operate in less than 32K words of core memory for most cases. RESULTS An example of the dialog for executing the program is shown in Fig. 1. Note that, if desired, the program gives a complete introduction for each step of the dialog using bovine insulin as an example, and that default responses allow the operator to move through the dialog quickly and skip the extended table if desired. Tables 2 and 3 and Fig. 2 illustrate the output of the program for the same example. Only the first 16 peaks of the 290 peaks that were calculated and are usually presented, are included in Table 2. Note that Fig. 2 shows two plots, in order to illustrate the capability of the program to generate distributions at any user-selected plot resolution. Execution time depends on the number of elements, the number of isotopes per element, and the threshold selected, but typical examples include bovine insulin (&, H377N65075S), 30 s, and polystyrene n = 1000 (C 8004 H,0,0)? 20 i. An additional lo-20 s is required to calculate the Gaussian distribution for plotting. Documented listings of the program are available from the author. Individuals are also invited to correspond concerning one-time use of the program.

8 344 WELCOME TO PROGRAM EXMASS THIS PROGRAM WAS DESIGNED TO ALLOW THE USER TO VISUALIZE THEO- RETICAL DISTRIBUTION PROFILES FOR ANY GIVEN MOLECULAR FORMULA. SPECIAL CONSIDERATIONS ARE MADE FOR THE LARGE NUMBER OF ISO- TOPIC CONTRIBUTIONS WHICH OCCUR FOR MANY COMPOUNDS AT HIGHER MASSES. THE PROGRAM ACCEPTS THE INPUT OF A MOLECULAR FORMULA, FOLLOWED BY INTERACTIVE INPUT OF A NUMBER OF PARAMETERS WHICH AFFECT THE FINAL PRESENTATION OF THE THEORETICAL DISTRIBUTION PROFILE. DO YOU DISIRE A MORE COMPLETE INTRODUCTION TO THE PROGRAM? YES THE PROGRAM WILL FIRST ASK YOU TO INPUT A MOLECULAR FORMULA. THE FORMULA MAY CONTAIN UP TO 9999 ATOMS OF ANY OF THE STABLE ELEMENTS OF THE PERIODIC TABLE. IT WILL CHECK TO ENSURE THAT THE FOLLOWING RULES ARE MET: 1) FIRST CHARACTER MUST BE A LETTER (ELEMENT NAME), 2) ELEMENT NAMES MUST BE TWO CHARACTERS OR SHORTER, FOLLOWING PERIODIC TABLE ABBREVIATIONS, 3) ANY NUMBER OF SINGLE SPACES MAY BE INCLUDED, BUT TWO IN ROW INDICATES THE END OF THE INPUT. TRY TO INPUT THE FORMULA FOR BOVINE INSULIN. TRY INCORRECTLY AT FIRST TO SEE THE RESPONSE OF THE PROGRAM. *INPUT COMPOUNDS MOLECULAR FORMULA: 3CH2COOH *INPUT ERRORS, *UNKNOWN ELEMENT. *MUST GIVE ELEMENT SYMBOL FIRST. *ELEMENT MUST HAVE LESS THAN 3 LETTERS. TRY AGAIN, THE FORMULA IS C254 H377 N S6. *INPUT COMPOUNDS MOLECULAR FORMULA: C254H377N65075S6 THE PROGRAM MUST LIMIT THE NUMBER OF POSSIBLE PERMUTATIONS FOR MANY COMPOUNDS, AND THEREFORE REQUESTS A THRESHOLD (5% OF THE BASE PEAK) TO BE USED AS A CUTOFF. THRESHOLD MUST BE > 0 and -z 100 OR IT WILL DEFAULT TO 1 E-10. TRY A THRESHOLD OF O.OL FOR THIS EXAMPLE. *INPUT THRESHOLD AS % OF BASE PEAK: 0.01 THE PROGRAM NOW COMPLETES IT CALCULATIONS OF THE THEORETICAL DISTRIBUTIONS, WHICH MAY REQUIRE A MEASURABLE AMOUNT OF TIME, AND MAY REQUIRE RESETTING THE THRESHOLD IF TOO MANY PERMUTA- TIONS ARE GENERATED, AS IN THIS EXAMPLE. NOTE THAT THE PROGRAM WILL INFORM YOU IF THIS IS NECESSARY; *TOO MANY PEAKS, THRESHOLD RESET TO E-3 AFTER COMPLETING THE CALCULATIONS, THE PROGRAM WILL ASK QUES- TIONS CONCERNING THE DESIRED OUTPUT FORMAT. THE FIRST QUESTION IS WHETHER YOU WANT TO SEE THE ISOTOPIC DISTRIBUTIONS FOR EACH

9 345 ABOVE THRESHOLD PERMUTATION, OR GO ON TO THE TABLE OF PEAKS AT EACH INTEGER MASS AND THE PLOT. FOR THIS EXAMPLE REPLY YES OR SIMPLY Y. *OUTPUT ISOTOPIC DISTRIBUTIONS FOR ALL PEAKS? YES NEXT THE PROGRAM REQUESTS THE REPORT DEVICE: $VDU FOR THE CRT, WHICH IS THE DEFAULT DEVICE, OR $PPL FOR THE VERSATEC PRINTER/ PLOTTER. FOR THIS EXAMPLE REPLY WITH $VDU OR A CARRIAGE RETURN. *REPORT $VDU DEVICE PLOT RESOLUTION IS SELECTED AT THIS POINT. THE DEFAULT VALUE IS UNIT RESOLUTION (10% VALLEY), BUT FOR THIS EXAMPLE TRY A RESOLU- TION OF *PLOT RESOLUTION: 2500 LASTLY, THE PROGRAM ASKS FOR A TITLE FOR THE TABLES AND PLOT. *TITLE: BOVINE INSULIN, C254 H377 N S6 THE PROGRAM NOW OUTPUTS A TABLE OF EACH ABOVE THRESHOLD PEAK. FOR EACH PEAK, EVERY ELEMENT IS PRESENTED ALONGSIDE ITS ISOTOPIC DISTRIBUTION IN THAT PEAK. THE MASS AND ABSOLUTE ABUNDANCE ARE ALSO GIVEN FOR EACH PEAK. (See Table 2) THE FOLLOWiNG TABLE CONTAINS BOTH THE INPUT DATA AND A SUMMARY OF THE CALCULATED DATA, INCLUDING INTEGER MASS GROUPINGS OF THE PEAKS PRESENTED IN THE PREVIOUS TABLE. (See Table 3) FINALLY, A PLOT WILL BE GENERATED USING A GAUSSIAN DISTRIBUTION OF THE INTEGER MASS GROUPINGS OF THE PEAKS. NOTE THAT THE PRO- GRAM REQUESTS PATIENCE WHILE CALCULATING THE GAUSSIAN DISTRIBU- TION. NOTE ALSO THAT A BAR PLOT IS GENERATED UNDER THE GAUSSIAN DISTRIBUTION. THE PROGRAM DOES THIS IN ALL CASES WHERE THE PLOT RESOLUTION IS LOW WHEN COMPARED TO THE MASS, MAKING IT DIFFICULT TO VISUALIZE THE INDIVIDUAL PEAKS. (See Figure 2) NOTE: I) User responses are underlined_ 2) Only the text indicated by an asterisk (*) is output if a complete introduction is not requested. Fig. 1. Example of dialog for program EXMASS with extended introduction_

10 346 TABLE 2 Isotopic distributions, exact masses and absolute abundances of first 16 peaks for theoretical bovine insulin molecular ion envelope BOVINE INSULIN, C254 H377 N S6. PEAK NO. I : EXACT MASS = C,,,1Hj,714N I40 32s, PEAK NO. 2: E&C; MASS = C2~41H377 4N65 607~32S~33S1 PEAK NO. 3: EXACT MASS = C,~~ H~,7 4N~4 5N, 60,532S6 PEAK NO. 4: EXACT MASS = C2541H377 4N I S PEAK NO. 5 : &AC? b&s C, H37714N65 607,3zS~ PEAK NO. 6: EXACT MASS = C,,4 H 37a2H,14N S6 PEAK NO. 7: EXACT MASS = C2541H377 4N S~34SI PEAK NO. 8: EXACT MASS = C,,, H 14Ns3 5N2160,532S6 377 PEAK NO. 9: EXACT MASS = C2,4~H377 4N~4 5N,160,532S533S, PEAK NO. IO: EXACT MASS = c253 13C, H~7714Ns4 5N, S6 PEAK NO. 11: EXACT MASS = C2541H377 4N65160,4 80,32S6 PEAK NO. 12: EXACT MASS = C2541H3,, 4N64 5N, 60,4170,32SG PEAK NO. 13: EXACT MASS = C254 H376~H1 4N6415N S6 PEAK NO. 14: EXACT MASS = c253 13C1 H377 4N S533S, PEAK NO. 15: EXACT MASS = 573 I.605 2C~j~13C, H37714N~5160,4170,32S~ PEAK NO. 16: EXACT MASS = C,,, 3C2 H37714N65 60,532S~ ABSOLUTE ABUNDANCE = 0_ E- 1 ABSOLUTE ABUNDANCE = E- 1 ABSOLUTE ABUNDANCE = E-2 ABSOLUTE ABUNDANCE = E-3 ABSOLUTE ABUNDANCE = E- 1 ABSOLUTE ABUNDANCE = O.l557495E-2 ABSOLUTE ABUNDANCE = E-2 ABSOLUTE ABUNDANCE = 0_789979OE-3 ABSOLUTE ABUNDANCE = E-3 ABSOLUTE ABUNDANCE = O.l87795OE- 1 ABSOLUTE ABUNDANCE = E-2 ABSOLUTE ABUNDANCE = O.l899039E-3 ABSOLUTE ABUNDANCE = E-3 ABSOLUTE ABUNDANCE = E-2 ABSOLUTE ABUNDANCE = E-2 ABSOLUTE ABUNDANCE =

11 347 TABLE 3 Summary of input and calculated data for bovine insulin BOVINE INSULIN, Czs4 H 377N65075 s, INPUT DATA: ELEMENT #ATOMS #ISOTOPES ISOTOPIC MASS ISOTOPIC ABUNDANCE C OOoO loo H N S CALCULATED DATA: NOMINAL MASS = 5727 MONOISOTOPIC MASS = AVERAGE MASS = THRESHOLD = 0. ICKUKUIOE-2 TOTAL ABUNDANCE = MOST ABUNDANT PEAK = MASS (MEAN) FRAC ABUN PPM SPREAD MULT

12 348 Plot PCsolUtlOn i 2500 Plot re501ut1on = 5731 Nominal me.5 Manosotoplc nmss ai 50- c g 40- : 30- J.s 2o f% IO- / I I I, I. I I I, I, m/z 60 al ; al 30.s = d b $740 mfz Fig. 2. Example of Gaussian distribution plots generated by program EXMASS insulin. for bovine ACKNOWLEDGMENT This work was supported by grants from the National Science Foundation, CHE and PCM REFERENCES 1 T. Matsuo, H. Matsuda and 1. Katakuse, Anal. Chem., 5 1 (1979) R.P. Lattimer, D.J. Harmon and G.E. Hansen, Anal. Chem., 52 (1980) C. Fenselau, R. Cotter, G. Hansen, T. Chen and David Heller, J. Chromatogr., 218 (1981) A. Deli and H. Morris, Biochem. Biophys. Res. Cornmun., 106 (1982) M. Barber, R.S. Bordoli, G.J. Elliott, R.D. Sedgwick, A.N. Tyler and B.N. Green, J. Chem. Sot., Chem. Commun., (1982) A.M. Buko, L.R. Phillips and B.A. Fraser, Biomed. Mass Spectrom., in press. 7 R.D. MacFarlane, Act. Chem. Res., (1982) J. Yergey, D. Heller, G. Hansen, R;J. Cotter and C. Fenselau, Anal. Chem., 55 (1983) J.L. Margrave and R.B. Polansky, J. Chem. Educ., 39 (1962) B. Boone, R.K. Mitchum and SE. Scheppele, Int. J. Mass Spectrom. Ion Phys., 5 (1970) I E. Hugentobler and J. Loliger, J. Chem. Educ., 49 (1972) B. Mattson and E. Carberry, J. Chem. Educ., 50 (1973) L.R. Crawford, Int. J. Mas Spectrom. Ion Phys., 10 (1972/3) Y.N. Sukharev, V.R. Sizoie and Y.S. Nekrasov, Org. Mass Spectrom., 16 (1981) M. Brownawell and J.S. Fillippo, Jr., J. Chem. Educ., 59 (1982) 663.

13 16 J.E. Campana, T.H. Risby and PC. Jurs, Anal. Chim. Acta, 112 (1979) A. Carrick and F. Glocking, J. Chem. Sot. A:, (1967) J-H. Beynon, Mass Spectrometry and Its Applications to Organic Chemistry, Elsevier, Amsterdam, 1960, p K. Biemann, Mass Spectrometry Organic Chemical Applications, McGraw-Hill, New York, 1962, p F.W. McLafferty, Interpretation of Mass Spectra, 3rd edn., University Science, Mill Valley, California, 1980, p_ R.E. Kirk, Introductory Statistics, Wadsworth, Belmont, California, 1978, p

Chem 115 POGIL Worksheet - Week 4 Moles & Stoichiometry

Chem 115 POGIL Worksheet - Week 4 Moles & Stoichiometry Chem 115 POGIL Worksheet - Week 4 Moles & Stoichiometry Why? Chemists are concerned with mass relationships in chemical reactions, usually run on a macroscopic scale (grams, kilograms, etc.). To deal with

More information

The Mole Concept. The Mole. Masses of molecules

The Mole Concept. The Mole. Masses of molecules The Mole Concept Ron Robertson r2 c:\files\courses\1110-20\2010 final slides for web\mole concept.docx The Mole The mole is a unit of measurement equal to 6.022 x 10 23 things (to 4 sf) just like there

More information

Chem 115 POGIL Worksheet - Week 4 Moles & Stoichiometry Answers

Chem 115 POGIL Worksheet - Week 4 Moles & Stoichiometry Answers Key Questions & Exercises Chem 115 POGIL Worksheet - Week 4 Moles & Stoichiometry Answers 1. The atomic weight of carbon is 12.0107 u, so a mole of carbon has a mass of 12.0107 g. Why doesn t a mole of

More information

Pesticide Analysis by Mass Spectrometry

Pesticide Analysis by Mass Spectrometry Pesticide Analysis by Mass Spectrometry Purpose: The purpose of this assignment is to introduce concepts of mass spectrometry (MS) as they pertain to the qualitative and quantitative analysis of organochlorine

More information

Chemical Composition. Introductory Chemistry: A Foundation FOURTH EDITION. Atomic Masses. Atomic Masses. Atomic Masses. Chapter 8

Chemical Composition. Introductory Chemistry: A Foundation FOURTH EDITION. Atomic Masses. Atomic Masses. Atomic Masses. Chapter 8 Introductory Chemistry: A Foundation FOURTH EDITION by Steven S. Zumdahl University of Illinois Chemical Composition Chapter 8 1 2 Atomic Masses Balanced equation tells us the relative numbers of molecules

More information

Chapter 3. Mass Relationships in Chemical Reactions

Chapter 3. Mass Relationships in Chemical Reactions Chapter 3 Mass Relationships in Chemical Reactions This chapter uses the concepts of conservation of mass to assist the student in gaining an understanding of chemical changes. Upon completion of Chapter

More information

Simple vs. True. Simple vs. True. Calculating Empirical and Molecular Formulas

Simple vs. True. Simple vs. True. Calculating Empirical and Molecular Formulas Calculating Empirical and Molecular Formulas Formula writing is a key component for success in chemistry. How do scientists really know what the true formula for a compound might be? In this lesson we

More information

Atomic Masses. Chapter 3. Stoichiometry. Chemical Stoichiometry. Mass and Moles of a Substance. Average Atomic Mass

Atomic Masses. Chapter 3. Stoichiometry. Chemical Stoichiometry. Mass and Moles of a Substance. Average Atomic Mass Atomic Masses Chapter 3 Stoichiometry 1 atomic mass unit (amu) = 1/12 of the mass of a 12 C atom so one 12 C atom has a mass of 12 amu (exact number). From mass spectrometry: 13 C/ 12 C = 1.0836129 amu

More information

Chemistry B11 Chapter 4 Chemical reactions

Chemistry B11 Chapter 4 Chemical reactions Chemistry B11 Chapter 4 Chemical reactions Chemical reactions are classified into five groups: A + B AB Synthesis reactions (Combination) H + O H O AB A + B Decomposition reactions (Analysis) NaCl Na +Cl

More information

Nuclear Structure. particle relative charge relative mass proton +1 1 atomic mass unit neutron 0 1 atomic mass unit electron -1 negligible mass

Nuclear Structure. particle relative charge relative mass proton +1 1 atomic mass unit neutron 0 1 atomic mass unit electron -1 negligible mass Protons, neutrons and electrons Nuclear Structure particle relative charge relative mass proton 1 1 atomic mass unit neutron 0 1 atomic mass unit electron -1 negligible mass Protons and neutrons make up

More information

Chapter 3. Chemical Reactions and Reaction Stoichiometry. Lecture Presentation. James F. Kirby Quinnipiac University Hamden, CT

Chapter 3. Chemical Reactions and Reaction Stoichiometry. Lecture Presentation. James F. Kirby Quinnipiac University Hamden, CT Lecture Presentation Chapter 3 Chemical Reactions and Reaction James F. Kirby Quinnipiac University Hamden, CT The study of the mass relationships in chemistry Based on the Law of Conservation of Mass

More information

Element of same atomic number, but different atomic mass o Example: Hydrogen

Element of same atomic number, but different atomic mass o Example: Hydrogen Atomic mass: p + = protons; e - = electrons; n 0 = neutrons p + + n 0 = atomic mass o For carbon-12, 6p + + 6n 0 = atomic mass of 12.0 o For chlorine-35, 17p + + 18n 0 = atomic mass of 35.0 atomic mass

More information

CHEM 101/105 Numbers and mass / Counting and weighing Lect-03

CHEM 101/105 Numbers and mass / Counting and weighing Lect-03 CHEM 101/105 Numbers and mass / Counting and weighing Lect-03 Interpretation of Elemental Chemical Symbols, Chemical Formulas, and Chemical Equations Interpretation of an element's chemical symbol depends

More information

Isotope distributions

Isotope distributions Isotope distributions This exposition is based on: R. Martin Smith: Understanding Mass Spectra. A Basic Approach. Wiley, 2nd edition 2004. [S04] Exact masses and isotopic abundances can be found for example

More information

Mass Spectrometry. Overview

Mass Spectrometry. Overview Mass Spectrometry Overview Mass Spectrometry is an analytic technique that utilizes the degree of deflection of charged particles by a magnetic field to find the relative masses of molecular ions and fragments.2

More information

KEY for Unit 1 Your Chemical Toolbox: Scientific Concepts, Fundamentals of Typical Calculations, the Atom and Much More

KEY for Unit 1 Your Chemical Toolbox: Scientific Concepts, Fundamentals of Typical Calculations, the Atom and Much More KEY for Unit 1 Your Chemical Toolbox: Scientific Concepts, Fundamentals of Typical Calculations, the Atom and Much More The Modern Periodic Table The Periodic Law - when elements are arranged according

More information

NMR and IR spectra & vibrational analysis

NMR and IR spectra & vibrational analysis Lab 5: NMR and IR spectra & vibrational analysis A brief theoretical background 1 Some of the available chemical quantum methods for calculating NMR chemical shifts are based on the Hartree-Fock self-consistent

More information

F321 THE STRUCTURE OF ATOMS. ATOMS Atoms consist of a number of fundamental particles, the most important are... in the nucleus of an atom

F321 THE STRUCTURE OF ATOMS. ATOMS Atoms consist of a number of fundamental particles, the most important are... in the nucleus of an atom Atomic Structure F32 TE STRUCTURE OF ATOMS ATOMS Atoms consist of a number of fundamental particles, the most important are... Mass / kg Charge / C Relative mass Relative Charge PROTON NEUTRON ELECTRON

More information

For example: (Example is from page 50 of the Thinkbook)

For example: (Example is from page 50 of the Thinkbook) SOLVING COMBINED SPECTROSCOPY PROBLEMS: Lecture Supplement: page 50-53 in Thinkbook CFQ s and PP s: page 216 241 in Thinkbook Introduction: The structure of an unknown molecule can be determined using

More information

Chem 31 Fall 2002. Chapter 3. Stoichiometry: Calculations with Chemical Formulas and Equations. Writing and Balancing Chemical Equations

Chem 31 Fall 2002. Chapter 3. Stoichiometry: Calculations with Chemical Formulas and Equations. Writing and Balancing Chemical Equations Chem 31 Fall 2002 Chapter 3 Stoichiometry: Calculations with Chemical Formulas and Equations Writing and Balancing Chemical Equations 1. Write Equation in Words -you cannot write an equation unless you

More information

Chemical Calculations: The Mole Concept and Chemical Formulas. AW Atomic weight (mass of the atom of an element) was determined by relative weights.

Chemical Calculations: The Mole Concept and Chemical Formulas. AW Atomic weight (mass of the atom of an element) was determined by relative weights. 1 Introduction to Chemistry Atomic Weights (Definitions) Chemical Calculations: The Mole Concept and Chemical Formulas AW Atomic weight (mass of the atom of an element) was determined by relative weights.

More information

13C NMR Spectroscopy

13C NMR Spectroscopy 13 C NMR Spectroscopy Introduction Nuclear magnetic resonance spectroscopy (NMR) is the most powerful tool available for structural determination. A nucleus with an odd number of protons, an odd number

More information

Mass Frontier 7.0 Quick Start Guide

Mass Frontier 7.0 Quick Start Guide Mass Frontier 7.0 Quick Start Guide The topics in this guide briefly step you through key features of the Mass Frontier application. Editing a Structure Working with Spectral Trees Building a Library Predicting

More information

Chapter 1 The Atomic Nature of Matter

Chapter 1 The Atomic Nature of Matter Chapter 1 The Atomic Nature of Matter 6. Substances that cannot be decomposed into two or more simpler substances by chemical means are called a. pure substances. b. compounds. c. molecules. d. elements.

More information

CHEMICAL FORMULA COEFFICIENTS AND SUBSCRIPTS. Chapter 3: Molecular analysis 3O 2 2O 3

CHEMICAL FORMULA COEFFICIENTS AND SUBSCRIPTS. Chapter 3: Molecular analysis 3O 2 2O 3 Chapter 3: Molecular analysis Read: BLB 3.3 3.5 H W : BLB 3:21a, c, e, f, 25, 29, 37,49, 51, 53 Supplemental 3:1 8 CHEMICAL FORMULA Formula that gives the TOTAL number of elements in a molecule or formula

More information

Lecture Topics Atomic weight, Mole, Molecular Mass, Derivation of Formulas, Percent Composition

Lecture Topics Atomic weight, Mole, Molecular Mass, Derivation of Formulas, Percent Composition Mole Calculations Chemical Equations and Stoichiometry Lecture Topics Atomic weight, Mole, Molecular Mass, Derivation of Formulas, Percent Composition Chemical Equations and Problems Based on Miscellaneous

More information

PERIODIC TABLE OF GROUPS OF ELEMENTS Elements can be classified using two different schemes.

PERIODIC TABLE OF GROUPS OF ELEMENTS Elements can be classified using two different schemes. 1 PERIODIC TABLE OF GROUPS OF ELEMENTS Elements can be classified using two different schemes. Metal Nonmetal Scheme (based on physical properties) Metals - most elements are metals - elements on left

More information

Introduction to Chemistry

Introduction to Chemistry 1 Copyright ç 1996 Richard Hochstim. All rights reserved. Terms of use. Introduction to Chemistry In Chemistry the word weight is commonly used in place of the more proper term mass. 1.1 Atoms, Ions, and

More information

Word Equations and Balancing Equations. Video Notes

Word Equations and Balancing Equations. Video Notes Word Equations and Balancing Equations Video Notes In this lesson, you will: Use the law of conservation of mass and provide standard rules for writing and balancing equations. Write and balance equations

More information

Review of Fundamental Mathematics

Review of Fundamental Mathematics Review of Fundamental Mathematics As explained in the Preface and in Chapter 1 of your textbook, managerial economics applies microeconomic theory to business decision making. The decision-making tools

More information

Chapter 3: Stoichiometry

Chapter 3: Stoichiometry Chapter 3: Stoichiometry Key Skills: Balance chemical equations Predict the products of simple combination, decomposition, and combustion reactions. Calculate formula weights Convert grams to moles and

More information

1. How many hydrogen atoms are in 1.00 g of hydrogen?

1. How many hydrogen atoms are in 1.00 g of hydrogen? MOLES AND CALCULATIONS USING THE MOLE CONCEPT INTRODUCTORY TERMS A. What is an amu? 1.66 x 10-24 g B. We need a conversion to the macroscopic world. 1. How many hydrogen atoms are in 1.00 g of hydrogen?

More information

IB Chemistry 1 Mole. One atom of C-12 has a mass of 12 amu. One mole of C-12 has a mass of 12 g. Grams we can use more easily.

IB Chemistry 1 Mole. One atom of C-12 has a mass of 12 amu. One mole of C-12 has a mass of 12 g. Grams we can use more easily. The Mole Atomic mass units and atoms are not convenient units to work with. The concept of the mole was invented. This was the number of atoms of carbon-12 that were needed to make 12 g of carbon. 1 mole

More information

SYMBOLS, FORMULAS AND MOLAR MASSES

SYMBOLS, FORMULAS AND MOLAR MASSES SYMBOLS, FORMULAS AND MOLAR MASSES OBJECTIVES 1. To correctly write and interpret chemical formulas 2. To calculate molecular weights from chemical formulas 3. To calculate moles from grams using chemical

More information

0 10 20 30 40 50 60 70 m/z

0 10 20 30 40 50 60 70 m/z Mass spectrum for the ionization of acetone MS of Acetone + Relative Abundance CH 3 H 3 C O + M 15 (loss of methyl) + O H 3 C CH 3 43 58 0 10 20 30 40 50 60 70 m/z It is difficult to identify the ions

More information

Amount of Substance. http://www.avogadro.co.uk/definitions/elemcompmix.htm

Amount of Substance. http://www.avogadro.co.uk/definitions/elemcompmix.htm Page 1 of 14 Amount of Substance Key terms in this chapter are: Element Compound Mixture Atom Molecule Ion Relative Atomic Mass Avogadro constant Mole Isotope Relative Isotopic Mass Relative Molecular

More information

Proton Nuclear Magnetic Resonance ( 1 H-NMR) Spectroscopy

Proton Nuclear Magnetic Resonance ( 1 H-NMR) Spectroscopy Proton Nuclear Magnetic Resonance ( 1 H-NMR) Spectroscopy Theory behind NMR: In the late 1940 s, physical chemists originally developed NMR spectroscopy to study different properties of atomic nuclei,

More information

We know from the information given that we have an equal mass of each compound, but no real numbers to plug in and find moles. So what can we do?

We know from the information given that we have an equal mass of each compound, but no real numbers to plug in and find moles. So what can we do? How do we figure this out? We know that: 1) the number of oxygen atoms can be found by using Avogadro s number, if we know the moles of oxygen atoms; 2) the number of moles of oxygen atoms can be found

More information

L. Yu et al. Correspondence to: Q. Zhang (dkwzhang@ucdavis.edu)

L. Yu et al. Correspondence to: Q. Zhang (dkwzhang@ucdavis.edu) Supplement of Atmos. Chem. Phys. Discuss., 5, 967 974, 5 http://www.atmos-chem-phys-discuss.net/5/967/5/ doi:.594/acpd-5-967-5-supplement Author(s) 5. CC Attribution. License. Supplement of Molecular transformations

More information

Organic Chemistry Calculations

Organic Chemistry Calculations Organic Chemistry Calculations There are three basic units for measurement in the organic laboratory mass, volume, and number, measured in moles. Most of the other types of measurements are combinations

More information

Performing Calculatons

Performing Calculatons Performing Calculatons There are three basic units for measurement in the organic laboratory mass, volume, and number, measured in moles. Most of the other types of measurements are combinations of them,

More information

Calculations with Chemical Formulas and Equations

Calculations with Chemical Formulas and Equations Chapter 3 Calculations with Chemical Formulas and Equations Concept Check 3.1 You have 1.5 moles of tricycles. a. How many moles of seats do you have? b. How many moles of tires do you have? c. How could

More information

CHAPTER 3 Calculations with Chemical Formulas and Equations. atoms in a FORMULA UNIT

CHAPTER 3 Calculations with Chemical Formulas and Equations. atoms in a FORMULA UNIT CHAPTER 3 Calculations with Chemical Formulas and Equations MOLECULAR WEIGHT (M. W.) Sum of the Atomic Weights of all atoms in a MOLECULE of a substance. FORMULA WEIGHT (F. W.) Sum of the atomic Weights

More information

CHEMICAL FORMULAS AND FORMULA WEIGHT CALCULATIONS

CHEMICAL FORMULAS AND FORMULA WEIGHT CALCULATIONS CHEMICAL FORMULAS AND FORMULA WEIGHT CALCULATIONS 1. THE MEANING OF A CHEMICAL FORMULA A chemical formula is a shorthand method of representing the elements in a compound. The formula shows the formulas

More information

The isotopic distribution conundrum

The isotopic distribution conundrum The isotopic distribution conundrum Dirk Valkenborg 1, 2, 3, Inge Mertens 1, Filip Lemière 4, Erwin Witters 1, 4, Tomasz Burzykowski 2, 3 1 Flemish Institute for Technological Research, VITO, Mol, Belgium

More information

Return to Lab Menu. Stoichiometry Exploring the Reaction between Baking Soda and Vinegar

Return to Lab Menu. Stoichiometry Exploring the Reaction between Baking Soda and Vinegar Return to Lab Menu Stoichiometry Exploring the Reaction between Baking Soda and Vinegar Objectives -to observe and measure mass loss in a gas forming reaction -to calculate CO 2 loss and correlate to a

More information

Partial Fractions. Combining fractions over a common denominator is a familiar operation from algebra:

Partial Fractions. Combining fractions over a common denominator is a familiar operation from algebra: Partial Fractions Combining fractions over a common denominator is a familiar operation from algebra: From the standpoint of integration, the left side of Equation 1 would be much easier to work with than

More information

Solving Systems of Linear Equations Using Matrices

Solving Systems of Linear Equations Using Matrices Solving Systems of Linear Equations Using Matrices What is a Matrix? A matrix is a compact grid or array of numbers. It can be created from a system of equations and used to solve the system of equations.

More information

Thermo Scientific GC-MS Data Acquisition Instructions for Cerno Bioscience MassWorks Software

Thermo Scientific GC-MS Data Acquisition Instructions for Cerno Bioscience MassWorks Software Thermo Scientific GC-MS Data Acquisition Instructions for Cerno Bioscience MassWorks Software Mark Belmont and Alexander N. Semyonov, Thermo Fisher Scientific, Austin, TX, USA Ming Gu, Cerno Bioscience,

More information

Unit 2: Quantities in Chemistry

Unit 2: Quantities in Chemistry Mass, Moles, & Molar Mass Relative quantities of isotopes in a natural occurring element (%) E.g. Carbon has 2 isotopes C-12 and C-13. Of Carbon s two isotopes, there is 98.9% C-12 and 11.1% C-13. Find

More information

Chapter 6 Chemical Calculations

Chapter 6 Chemical Calculations Chapter 6 Chemical Calculations 1 Submicroscopic Macroscopic 2 Chapter Outline 1. Formula Masses (Ch 6.1) 2. Percent Composition (supplemental material) 3. The Mole & Avogadro s Number (Ch 6.2) 4. Molar

More information

Calculating Atoms, Ions, or Molecules Using Moles

Calculating Atoms, Ions, or Molecules Using Moles TEKS REVIEW 8B Calculating Atoms, Ions, or Molecules Using Moles TEKS 8B READINESS Use the mole concept to calculate the number of atoms, ions, or molecules in a sample TEKS_TXT of material. Vocabulary

More information

Calculation of Molar Masses. Molar Mass. Solutions. Solutions

Calculation of Molar Masses. Molar Mass. Solutions. Solutions Molar Mass Molar mass = Mass in grams of one mole of any element, numerically equal to its atomic weight Molar mass of molecules can be determined from the chemical formula and molar masses of elements

More information

Sample Exercise 8.1 Magnitudes of Lattice Energies

Sample Exercise 8.1 Magnitudes of Lattice Energies Sample Exercise 8.1 Magnitudes of Lattice Energies Without consulting Table 8.2, arrange the ionic compounds NaF, CsI, and CaO in order of increasing lattice energy. Analyze From the formulas for three

More information

Other Stoich Calculations A. mole mass (mass mole) calculations. GIVEN mol A x CE mol B. PT g A CE mol A MOLE MASS :

Other Stoich Calculations A. mole mass (mass mole) calculations. GIVEN mol A x CE mol B. PT g A CE mol A MOLE MASS : Chem. I Notes Ch. 12, part 2 Using Moles NOTE: Vocabulary terms are in boldface and underlined. Supporting details are in italics. 1 MOLE = 6.02 x 10 23 representative particles (representative particles

More information

Honors Chemistry: Unit 6 Test Stoichiometry PRACTICE TEST ANSWER KEY Page 1. A chemical equation. (C-4.4)

Honors Chemistry: Unit 6 Test Stoichiometry PRACTICE TEST ANSWER KEY Page 1. A chemical equation. (C-4.4) Honors Chemistry: Unit 6 Test Stoichiometry PRACTICE TEST ANSWER KEY Page 1 1. 2. 3. 4. 5. 6. Question What is a symbolic representation of a chemical reaction? What 3 things (values) is a mole of a chemical

More information

Spectrophotometry and the Beer-Lambert Law: An Important Analytical Technique in Chemistry

Spectrophotometry and the Beer-Lambert Law: An Important Analytical Technique in Chemistry Spectrophotometry and the Beer-Lambert Law: An Important Analytical Technique in Chemistry Jon H. Hardesty, PhD and Bassam Attili, PhD Collin College Department of Chemistry Introduction: In the last lab

More information

CH3 Stoichiometry. The violent chemical reaction of bromine and phosphorus. P.76

CH3 Stoichiometry. The violent chemical reaction of bromine and phosphorus. P.76 CH3 Stoichiometry The violent chemical reaction of bromine and phosphorus. P.76 Contents 3.1 Counting by Weighing 3.2 Atomic Masses 3.3 The Mole 3.4 Molar Mass 3.5 Percent Composition of Compounds 3.6

More information

Atomic Theory Part 1

Atomic Theory Part 1 Atomic Theory Part 1 Reading: Ch 2 sections 1 6, 8 Homework: Chapter 2: 39, 47, 43, 49, 51*, 53, 55, 57, 71, 73, 77, 99, 103 (optional) * = important homework question The Atomic Theory (John Dalton, 1803)

More information

CHE334 Identification of an Unknown Compound By NMR/IR/MS

CHE334 Identification of an Unknown Compound By NMR/IR/MS CHE334 Identification of an Unknown Compound By NMR/IR/MS Purpose The object of this experiment is to determine the structure of an unknown compound using IR, 1 H-NMR, 13 C-NMR and Mass spectroscopy. Infrared

More information

Chapter 3! Stoichiometry: Calculations with Chemical Formulas and Equations. Stoichiometry

Chapter 3! Stoichiometry: Calculations with Chemical Formulas and Equations. Stoichiometry Chapter 3! : Calculations with Chemical Formulas and Equations Anatomy of a Chemical Equation CH 4 (g) + 2O 2 (g) CO 2 (g) + 2 H 2 O (g) Anatomy of a Chemical Equation CH 4 (g) + 2 O 2 (g) CO 2 (g) + 2

More information

The Mole. 6.022 x 10 23

The Mole. 6.022 x 10 23 The Mole 6.022 x 10 23 Background: atomic masses Look at the atomic masses on the periodic table. What do these represent? E.g. the atomic mass of Carbon is 12.01 (atomic # is 6) We know there are 6 protons

More information

ph. Weak acids. A. Introduction

ph. Weak acids. A. Introduction ph. Weak acids. A. Introduction... 1 B. Weak acids: overview... 1 C. Weak acids: an example; finding K a... 2 D. Given K a, calculate ph... 3 E. A variety of weak acids... 5 F. So where do strong acids

More information

Unit 9 Compounds Molecules

Unit 9 Compounds Molecules Unit 9 Compounds Molecules INTRODUCTION Compounds are the results of combinations of elements. These new substances have unique properties compared to the elements that make them up. Compounds are by far

More information

Sample Problem: STOICHIOMETRY and percent yield calculations. How much H 2 O will be formed if 454 g of. decomposes? NH 4 NO 3 N 2 O + 2 H 2 O

Sample Problem: STOICHIOMETRY and percent yield calculations. How much H 2 O will be formed if 454 g of. decomposes? NH 4 NO 3 N 2 O + 2 H 2 O STOICHIOMETRY and percent yield calculations 1 Steps for solving Stoichiometric Problems 2 Step 1 Write the balanced equation for the reaction. Step 2 Identify your known and unknown quantities. Step 3

More information

Mass Frontier Version 7.0

Mass Frontier Version 7.0 Mass Frontier Version 7.0 User Guide XCALI-97349 Revision A February 2011 2011 Thermo Fisher Scientific Inc. All rights reserved. Mass Frontier, Mass Frontier Server Manager, Fragmentation Library, Spectral

More information

Sample Analysis Design Isotope Dilution

Sample Analysis Design Isotope Dilution Isotope Dilution Most accurate and precise calibration method available Requires analyte with two stable isotopes Monoisotopic elements cannot be determined via isotope dilution Spike natural sample with

More information

Chapter 4. Chemical Composition. Chapter 4 Topics H 2 S. 4.1 Mole Quantities. The Mole Scale. Molar Mass The Mass of 1 Mole

Chapter 4. Chemical Composition. Chapter 4 Topics H 2 S. 4.1 Mole Quantities. The Mole Scale. Molar Mass The Mass of 1 Mole Chapter 4 Chemical Composition Chapter 4 Topics 1. Mole Quantities 2. Moles, Masses, and Particles 3. Determining Empirical Formulas 4. Chemical Composition of Solutions Copyright The McGraw-Hill Companies,

More information

Signal to Noise Instrumental Excel Assignment

Signal to Noise Instrumental Excel Assignment Signal to Noise Instrumental Excel Assignment Instrumental methods, as all techniques involved in physical measurements, are limited by both the precision and accuracy. The precision and accuracy of a

More information

MOLAR MASS AND MOLECULAR WEIGHT Themolar mass of a molecule is the sum of the atomic weights of all atoms in the molecule. Molar Mass.

MOLAR MASS AND MOLECULAR WEIGHT Themolar mass of a molecule is the sum of the atomic weights of all atoms in the molecule. Molar Mass. Counting Atoms Mg burns in air (O 2 ) to produce white magnesium oxide, MgO. How can we figure out how much oxide is produced from a given mass of Mg? PROBLEM: If If 0.200 g of Mg is is burned, how much

More information

Name Date Class CHEMICAL QUANTITIES. SECTION 10.1 THE MOLE: A MEASUREMENT OF MATTER (pages 287 296)

Name Date Class CHEMICAL QUANTITIES. SECTION 10.1 THE MOLE: A MEASUREMENT OF MATTER (pages 287 296) Name Date Class 10 CHEMICAL QUANTITIES SECTION 10.1 THE MOLE: A MEASUREMENT OF MATTER (pages 287 296) This section defines the mole and explains how the mole is used to measure matter. It also teaches

More information

Description of the Mole Concept:

Description of the Mole Concept: Description of the Mole Concept: Suppose you were sent into the store to buy 36 eggs. When you picked them up you would get 3 boxes, each containing 12 eggs. You just used a mathematical device, called

More information

Chemical Calculations: Formula Masses, Moles, and Chemical Equations

Chemical Calculations: Formula Masses, Moles, and Chemical Equations Chemical Calculations: Formula Masses, Moles, and Chemical Equations Atomic Mass & Formula Mass Recall from Chapter Three that the average mass of an atom of a given element can be found on the periodic

More information

Solving Spectroscopy Problems

Solving Spectroscopy Problems Solving Spectroscopy Problems The following is a detailed summary on how to solve spectroscopy problems, key terms are highlighted in bold and the definitions are from the illustrated glossary on Dr. Hardinger

More information

Sample Exercise 8.1 Magnitudes of Lattice Energies

Sample Exercise 8.1 Magnitudes of Lattice Energies Sample Exercise 8.1 Magnitudes of Lattice Energies Without consulting Table 8.2, arrange the following ionic compounds in order of increasing lattice energy: NaF, CsI, and CaO. Analyze: From the formulas

More information

7-5.5. Translate chemical symbols and the chemical formulas of common substances to show the component parts of the substances including:

7-5.5. Translate chemical symbols and the chemical formulas of common substances to show the component parts of the substances including: 7-5.5 Translate chemical symbols and the chemical formulas of common substances to show the component parts of the substances including: NaCl [salt], H 2 O [water], C 6 H 12 O 6 [simple sugar], O 2 [oxygen

More information

How To Calculate Mass In Chemical Reactions

How To Calculate Mass In Chemical Reactions We have used the mole concept to calculate mass relationships in chemical formulas Molar mass of ethanol (C 2 H 5 OH)? Molar mass = 2 x 12.011 + 6 x 1.008 + 1 x15.999 = 46.069 g/mol Mass percentage of

More information

Getting the most from this book...4 About this book...5

Getting the most from this book...4 About this book...5 Contents Getting the most from this book...4 About this book....5 Content Guidance Topic 1 Atomic structure and the periodic table...8 Topic 2 Bonding and structure...14 Topic 2A Bonding....14 Topic 2B

More information

Mass Spectrometry Signal Calibration for Protein Quantitation

Mass Spectrometry Signal Calibration for Protein Quantitation Cambridge Isotope Laboratories, Inc. www.isotope.com Proteomics Mass Spectrometry Signal Calibration for Protein Quantitation Michael J. MacCoss, PhD Associate Professor of Genome Sciences University of

More information

MOLECULAR MASS AND FORMULA MASS

MOLECULAR MASS AND FORMULA MASS 1 MOLECULAR MASS AND FORMULA MASS Molecular mass = sum of the atomic weights of all atoms in the molecule. Formula mass = sum of the atomic weights of all atoms in the formula unit. 2 MOLECULAR MASS AND

More information

Integration. Topic: Trapezoidal Rule. Major: General Engineering. Author: Autar Kaw, Charlie Barker. http://numericalmethods.eng.usf.

Integration. Topic: Trapezoidal Rule. Major: General Engineering. Author: Autar Kaw, Charlie Barker. http://numericalmethods.eng.usf. Integration Topic: Trapezoidal Rule Major: General Engineering Author: Autar Kaw, Charlie Barker 1 What is Integration Integration: The process of measuring the area under a function plotted on a graph.

More information

Nuclear Magnetic Resonance notes

Nuclear Magnetic Resonance notes Reminder: These notes are meant to supplement, not replace, the laboratory manual. Nuclear Magnetic Resonance notes Nuclear Magnetic Resonance (NMR) is a spectrometric technique which provides information

More information

MarkerView Software 1.2.1 for Metabolomic and Biomarker Profiling Analysis

MarkerView Software 1.2.1 for Metabolomic and Biomarker Profiling Analysis MarkerView Software 1.2.1 for Metabolomic and Biomarker Profiling Analysis Overview MarkerView software is a novel program designed for metabolomics applications and biomarker profiling workflows 1. Using

More information

Solution of Linear Systems

Solution of Linear Systems Chapter 3 Solution of Linear Systems In this chapter we study algorithms for possibly the most commonly occurring problem in scientific computing, the solution of linear systems of equations. We start

More information

ForensicDB: A Web-accessible Spectral Database

ForensicDB: A Web-accessible Spectral Database ForensicDB: A Web-accessible Spectral Database Table of Contents 1. Introduction to ForensicDB... 1 2. Accessing ForensicDB... 1 3. Setting System Properties... 5 Spectrum Properties... 5 Frame Properties...

More information

KINETIC DETERMINATION OF SELENIUM BY VISIBLE SPECTROSCOPY (VERSION 1.8)

KINETIC DETERMINATION OF SELENIUM BY VISIBLE SPECTROSCOPY (VERSION 1.8) Selenium Determination, Page 1 KINETIC DETERMINATION OF SELENIUM BY VISIBLE SPECTROSCOPY I. BACKGROUND. (VERSION 1.8) The majority of reactions used in analytical chemistry possess the following characteristics:

More information

Electrons in Atoms & Periodic Table Chapter 13 & 14 Assignment & Problem Set

Electrons in Atoms & Periodic Table Chapter 13 & 14 Assignment & Problem Set Electrons in Atoms & Periodic Table Name Warm-Ups (Show your work for credit) Date 1. Date 2. Date 3. Date 4. Date 5. Date 6. Date 7. Date 8. Electrons in Atoms & Periodic Table 2 Study Guide: Things You

More information

Matter. Atomic weight, Molecular weight and Mole

Matter. Atomic weight, Molecular weight and Mole Matter Atomic weight, Molecular weight and Mole Atomic Mass Unit Chemists of the nineteenth century realized that, in order to measure the mass of an atomic particle, it was useless to use the standard

More information

= 16.00 amu. = 39.10 amu

= 16.00 amu. = 39.10 amu Using Chemical Formulas Objective 1: Calculate the formula mass or molar mass of any given compound. The Formula Mass of any molecule, formula unit, or ion is the sum of the average atomic masses of all

More information

Chem 1100 Chapter Three Study Guide Answers Outline I. Molar Mass and Moles A. Calculations of Molar Masses

Chem 1100 Chapter Three Study Guide Answers Outline I. Molar Mass and Moles A. Calculations of Molar Masses Chem 1100 Chapter Three Study Guide Answers Outline I. Molar Mass and Moles A. Calculations of Molar Masses B. Calculations of moles C. Calculations of number of atoms from moles/molar masses 1. Avagadro

More information

Algebra 1 Course Information

Algebra 1 Course Information Course Information Course Description: Students will study patterns, relations, and functions, and focus on the use of mathematical models to understand and analyze quantitative relationships. Through

More information

CHEM 110: CHAPTER 3: STOICHIOMETRY: CALCULATIONS WITH CHEMICAL FORMULAS AND EQUATIONS

CHEM 110: CHAPTER 3: STOICHIOMETRY: CALCULATIONS WITH CHEMICAL FORMULAS AND EQUATIONS 1 CHEM 110: CHAPTER 3: STOICHIOMETRY: CALCULATIONS WITH CHEMICAL FORMULAS AND EQUATIONS The Chemical Equation A chemical equation concisely shows the initial (reactants) and final (products) results of

More information

Unique Software Tools to Enable Quick Screening and Identification of Residues and Contaminants in Food Samples using Accurate Mass LC-MS/MS

Unique Software Tools to Enable Quick Screening and Identification of Residues and Contaminants in Food Samples using Accurate Mass LC-MS/MS Unique Software Tools to Enable Quick Screening and Identification of Residues and Contaminants in Food Samples using Accurate Mass LC-MS/MS Using PeakView Software with the XIC Manager to Get the Answers

More information

History of the Atom & Atomic Theory

History of the Atom & Atomic Theory Chapter 5 History of the Atom & Atomic Theory You re invited to a Thinking Inside the Box Conference Each group should nominate a: o Leader o Writer o Presenter You have 5 minutes to come up with observations

More information

NET IONIC EQUATIONS. A balanced chemical equation can describe all chemical reactions, an example of such an equation is:

NET IONIC EQUATIONS. A balanced chemical equation can describe all chemical reactions, an example of such an equation is: NET IONIC EQUATIONS A balanced chemical equation can describe all chemical reactions, an example of such an equation is: NaCl + AgNO 3 AgCl + NaNO 3 In this case, the simple formulas of the various reactants

More information

泛 用 蛋 白 質 體 學 之 質 譜 儀 資 料 分 析 平 台 的 建 立 與 應 用 Universal Mass Spectrometry Data Analysis Platform for Quantitative and Qualitative Proteomics

泛 用 蛋 白 質 體 學 之 質 譜 儀 資 料 分 析 平 台 的 建 立 與 應 用 Universal Mass Spectrometry Data Analysis Platform for Quantitative and Qualitative Proteomics 泛 用 蛋 白 質 體 學 之 質 譜 儀 資 料 分 析 平 台 的 建 立 與 應 用 Universal Mass Spectrometry Data Analysis Platform for Quantitative and Qualitative Proteomics 2014 Training Course Wei-Hung Chang ( 張 瑋 宏 ) ABRC, Academia

More information

Chapter 8 How to Do Chemical Calculations

Chapter 8 How to Do Chemical Calculations Chapter 8 How to Do Chemical Calculations Chemistry is both a qualitative and a quantitative science. In the laboratory, it is important to be able to measure quantities of chemical substances and, as

More information

Stoichiometry. What is the atomic mass for carbon? For zinc?

Stoichiometry. What is the atomic mass for carbon? For zinc? Stoichiometry Atomic Mass (atomic weight) Atoms are so small, it is difficult to discuss how much they weigh in grams We use atomic mass units an atomic mass unit (AMU) is one twelfth the mass of the catbon-12

More information

Solving Rational Equations

Solving Rational Equations Lesson M Lesson : Student Outcomes Students solve rational equations, monitoring for the creation of extraneous solutions. Lesson Notes In the preceding lessons, students learned to add, subtract, multiply,

More information

Elements in the periodic table are indicated by SYMBOLS. To the left of the symbol we find the atomic mass (A) at the upper corner, and the atomic num

Elements in the periodic table are indicated by SYMBOLS. To the left of the symbol we find the atomic mass (A) at the upper corner, and the atomic num . ATOMIC STRUCTURE FUNDAMENTALS LEARNING OBJECTIVES To review the basics concepts of atomic structure that have direct relevance to the fundamental concepts of organic chemistry. This material is essential

More information