in protein synthesis proceeds by an analogous mechanism, in which puromycin is
|
|
- Joseph Lucas
- 8 years ago
- Views:
Transcription
1 ROLE OF GUANOSINE 5'-TRIPHOSPHATE IN THE INITIATION OF PEPTIDE SYNTHESIS, I. SYNTHESIS OF FORAI YLAIETHIONYL-PUROAI YCIN* BY J. W. B. HERSHEY AND R. E. THACH JOHN COLLINS WARREN LABORATORIES OF HUNTINGTON MEMORIAL HOSPITAL OF HARVARD UNIVERSITY AT MASSACHUSETTS GENERAL HOSPITAL, BOSTON, AND DEPARTMENT OF CHEMISTRY, HARVARD UNIVERSITY Communicated by Paul Doty, January 27, 1967 The reaction of puromycin with formylmethionyl-srna (F-met-sRNA) in the presence of ribosomes and ApUpG messenger to give formylmethionyl-puromycin (F-met-puro) has been described recently by -Marcker and Bretscherl and by Zamir et al.2 The results of their experiments suggest that in the course of this reaction F-met-sRNA binds first to the site on the ribosome normally occupied by peptidylsrna (the P site) and then reacts with puromycin, which is bound to the site normally occupied by aminoacyl-srna (the A site). This process is reported to require neither GTP nor supernatant enzymes.2 On the basis of these and other experiments3 4 it has been postulated that the formation of the initial peptide bond in protein synthesis proceeds by an analogous mechanism, in which puromycin is replaced by an aminoacyl-srna molecule. According to this model, the first peptide bond forms spontaneously (or is catalyzed by a ribosomal enzyme3) once the two species of aminoacyl-srna are bound, without the involvement of GTP. In order to test this model we have studied the conditions for dipeptide synthesis with the messenger ApUpGpUpUpU. In sharp contrast to the predictions of the theory, we have observed an absolute requirement for GTP in the formation of the dipeptide formylmethionyl-phenylalanine.5 Moreover, 5'-guanylyl-methylenediphosphonate (GMP-PCP), an analogue of GTP which is a strong competitive inhibitor of protein synthesis,' inhibits this reaction in the presence of GTP. This surprising result led to a reinvestigation of the reaction of puromycin with F-metsRNA described above. In particular, it was important to determine whether this reaction required the presence of GTP, under conditions optimal for dipeptide synthesis. Contrary to the results of others,2 our experiments show clearly that GTP strongly stimulates the formation of F-nmet-puro, and that GM\P-PCP inhibits this reaction. Moreover, it has been demonstrated that GTP acts in a step prior to the actual formation of F-met-puro, but subsequent to the binding of F-met-sRNA to the ribosome. Materials and Methods.-Ribonomes and S-30: S-30 was prepared from E. coli strain A19 or 1113 (a strain obtained from Dr. W. Gilbert, which lacks RNase I and polynucleotide phosphorylase and which has a temperature-sensitive RNase II) essentially according to the procedure of Capecchi and Gussin,7 except that the crude cell extract was made 1 mm in dithioerythritol before centrifuging at 30,000 X g. Ribosomes were prepared by the method of Ganoza.8 S-30 was centrifuged at 105,000 X g for 3 hr. The upper two thirds of the supernatant was removed, dialyzed against 0.01 M Tris-HCl, ph 7.5, and M glutathione, and stored in liquid nitrogen as the S-100 preparation. The ribosomal pellet was suspended gently in 0.01 M Tris-HCl, ph 7.6, M Mg(OAc)2, and 0.50 M NH4OAc and centrifuged 4 hr at 105,000 X g. The supernatant was saved as the source of initiation factors. The ribosomes were centrifuged twice more in a buffer containing 0.01 M Tris-HCl, ph 7.6, 0.01 M Mg(OAc)2, and 0.50 M NH4OAc. The final pellet was suspended in 759
2 760 BIOCHEMISTRY: HERSHEY AND THACH PROC. N. A. S M Tris-HCi, ph 7.7, and 0.01 M Mg(OAc)2 and clarified by 15 min centrifugation at 30,000 X g. The ribosomes were stored at a concentration of 20 mg/ml in ice and could be kept this way for 3-4 weeks with little loss of activity. At no time during the preparation were they frozen. Initiation factors: The supernatant from the first ribosomal wash was brought to 80% saturation with solid (NH4)2SO4, during which the ph1 was constantly adjusted to 7.8. The precipitate was dissolved in 0.01 M Tris-HCl, ph 7.8, 0.01 M Mg(OAc)2, and 0.06 M KCl and dialyzed overnight against the same buffer. The solution was passed through a 1 X 20 cm column of G-25 Sephadex equilibrated with 0.02 M sodium phosphate, ph 6.0. After 3 hr dialysis against the Tris-Mg-KCl buffer above, the factor preparation was divided into small aliquots and frozen. Formylated C'4-met-sRNA: E. coli B srna (Schwarz BioResearch, Inc.) was further purified according to Holley et al.9 by elution from a DEAE-cellulose column with 1 M NaCl in 0.01 M The srna was recovered by ethanol precipitation, dissolved in a small volume Tris-HCl, ph 7.5. of M KOAc, ph 5, and M glutathione, and dialyzed against water overnight. Two mg of srna were charged with C'4-methionine in a total volume of ml containing: 200 mm 1 Tris-HCl, ph 7.1, 20 mm, Mg(OAc), 10 mm glutathione, 7.5 mm ATP, 0.2 mm CTP, 20 mm creatine phosphate, 70 Mg/ml creatine phosphokinase (Sigma Chemical Co.), 0.6mM folinic acid (General Biochemicals), 0.03 mm each 19 cold amino acids (less Met), 6 Mucuries C14-methionine (New England Nuclear Corp., specific activity 187 mc/mmole), and 0.20ml/ml of S-100. After 20 min incubation at 370 the solution was cooled in ice, 20,moles EDTA was added, and the protein was extracted thoroughly with 1 ml phenol. The srna was then precipitated with ethanol, dissolved in 1 ml water, and passed through a 1 X 20 cm G-25 Sephadex column. The first peak, as determined by absorption at 260 mpa, was pooled and lyophylized. The charged srna was dissolved in water and M fl-mercaptoethanol, the ph was adjusted to 6, and the solution was stored frozen. The extent of charging varied from 3 to 4% on a molar basis, with roughly 70% of the methionine formylated. Puromycin reaction and assay: The concentration of ingredients in the complete reaction mixture was: 0.05 M Tris-HCl, ph 7.1, 0.10 M NH4OAc, 10 mm Mg(OAc)2 or as stated, 1 mm GTP or as stated, 0.25 mm ApUpG, 1 mm puromycin, 0.2 mm GMP-PCP (when added), 2 mg/ml ribosomes, 0.10 ml/ml initiation factors, and 0.285,M formylated C14-met-sRNA (53 m,4c/ml). The concentrations of ApUpG, ribosomes, and factors indicated were those which gave optimal rates of reaction. Incubations were at 200. The amount of F-met-puro formed per 20 Ml aliquot was measured by the method of Leder and Bursztyn.'0 We have confirmed by paper chromatography and electrophoresis that more than 95% of the radioactivity extracted into the ethylacetate phase migrates as F-met-puro. By inspection of the apparent first-order reaction kinetics, the maximum extent of reaction could be estimated and log plots of the data constructed. These plots gave straight lines with good fit, and the slopes of these lines were used as a measure of the relative rates of reaction. Essentially the same relative rates could be estimated from the observed initial rates of reaction, but the calculations using log plots, which involved all the time points, seemed more reliable. Binding assay: Reaction mixtures contained 0.05 M Tris-HCl, ph 7.1, 0.10 M NH4OAc, 0.01 M Mg(OAc)2, 0.25mM ApUpG, 2 mg/ml ribosomes, 0.1 ml/ml initiation factors, 1 mmi GTP when added, and MAM formylated C'4-met-sRNA (53 muc/ml). Incubation was at 20 ; aliquots (10 Ml) were assayed according to Nirenberg and Leder."1 The synthesis of ApUpG has been described by Sundararajan and Thach." The GTP inhibitor, GMP-PCP, was prepared as described by Hershey and Monro.6 Results.-Requirement for GTP in the formation of F-met-puro: To determine the effect of GTP on the rate of F-met-puro formation, reaction mixtures were prepared with and without added GTP, and with added GMP-PCP. The reaction protocol and assay were as described in Materials and Methods. The time course of F-met-puro formation is shown in Figure 1. It is clear that GTP strongly stimulates the rate of this reaction. i/ioreover, GMIP-PCP reduces the rate below that obtained in the absence of GTP, suggesting that the reaction mixtures may contain a trace of contaminating GTP (or a contaminating enzyme system which generates GTP). The dependence of the GTP-stimulated reaction upon MJg++ concentration
3 VOL. 57, 1967 BIOCHEMISTRY: HERSHEY AND THACH 761 is shown in Figure 2. It is apparent that the optimum Mlg++ concentration is around 10 mm, similar to that observed in the binding of F-met-sRNA to ribosomes12 and in the incorporation of F-met into polypeptide.13 This result suggests that the GTP-dependent synthesis of F-met-puro is physiologically significant, and not an artifact induced by abnormal conditions. Effect of freezing ribosomes on the GTP-stimulated reaction: Initial investigations of the GTP dependence of F-met-puro synthesis did not give the results shown in Figure 2. Instead, GTP dependence was observed only at very low Mg++ concentrations (around 4-5 mm). At 10 mm1\ig++, there was no stimulation by GTP, and no inhibition by G1\IP-PCP. Only when unfrozen ribosomes8 were used did the strong stimulation by GTP (see Fig. 2) become apparent. The rate obtained with these ribosomes in the absence of GTP was similar to that observed with previous preparations of ribosomes which had been frozen, suggesting that freezing per se may have inactivated the GTP-dependent reaction. It was then of interest to test directly the effect of freezing on the GTP-dependent reaction. Aliquots of previously unfrozen ribosomes were frozen in liquid nitrogen and quickly thawed at 200, four times and eight times. It is evident (Fig. 3) that freezing and thawing markedly. reduces the rate of the GTP-dependent reaction, whereas the rate of reaction in the absence of GTP is unaffected. This result suggests that the GTPdependent reaction is extremely labile, and may be inactivated by relatively mild manipulations. This may explain at least in part why other workers2 have not observed GTP dependence. Formation of F-met-puro in S-30 extracts: While freezing and thawing, and 10 cr 6_-o 0 F,-COMPLETE~~~~~~~~~~~~~~~~~~OPLT -Grp~ ~ ~ ~~~~ 0 -T TIME,MIN FIG. 1.-Rate of formation of F-met-puro. Mg++ conc., mm. Reaction conditions are described in Materials and Methods. Calculations of,opmoles FIG. 2.-Variation of relative rates with from cpm were based on the assumption that Mg++ concentration. Reaction conditions only 50% of the F-met-puro is extracted from and calculation of relative rates of formation the aqueous solution.'0 Symbols represent: of F-met-puro are described in Materials and complete system (s); without GTP (h); Methods. Symbols represent: complete sy~swithout GTP but with GMP-PCP (s); tern (s); without GTP (A); without GTP without ApUpG (XM). (-). but with GMP-PCP
4 762 BIOCHEMISTRKY: HERSHEY AND THACH Paoc. N. A. S. perhaps other purification procedures, seemed to depress the GTP-dependent reaction, it was important to determine whether GTP dependence itself might also be an artifact induced by purification. To test this possibility, the synthesis of F-met-puro was studied using a fresh undialyzed S-30 preparation (see Materials and Methods) as a source of ribosomes and initiation factors. The effects of GTP and GMP-PCP on this reaction are shown in Figure 4. It is clear that GTP strongly stimulates the formation of F-met-puro at early times; the subsequent decrease in the amount of F-met-puro seems most probably due to deformylation by an enzyme which is known to be present in crude extracts.14 GMP-PCP depresses the rate somewhat below that obtained in the absence of GTP, again suggesting a low level of GTP contamination. These results indicate that the GTP dependence of this reaction is not an artifact caused by purification of ribosomes or factors. Effect of GTP on the binding of F-inet-sRNA (unfractionated) to ribosoines: It was now of interest to determine more precisely the mechanism by which GTP enhances the rate of F-met-puro synthesis. Since the first step in this reaction is thought to be the binding of F-met-sRNA to the ribosome, the effect of GTP on the rate of this reaction was studied. A typical result is shown in Figure 5, from which it is evident that GTP has only a small effect on the rate of binding. Although this result was obtained using unfractionated srna, it seems unlikely that a large proportion of the radioactivity bound is due to met-srnam;15 over 55 per cent of the total radioactivity added was bound, indicating that at the very z 10 8 UNFROZEN 10 I 0 ~~~~~~~4 xfrozen 8-0 < ~~~~~~~~~~~~~~~~~~~~I-- Cr< 7E 8xFRWEN X 6- w 4 0 J4- GTp TIME, MIN TIME, MIN. FIG. 3.-Effect of freezing ribosoines on the GTP-stimulated reaction. Small portions of the same preparation of ribosomes were frozen and thawed as indicated and then used in the puromycin reaction as in Fig. 1. The open symbols show the amount of F-met-puro formed in the presence of 1 mm GTP after the ribosomes were: unfrozen (0); 4 times frozen (A); 8 times frozen ( Ei). Closed symbols represent the corresponding reactions without GTP. FIG. 4.-Formation of F-metpuro in S-30 extracts. Reaction conditions were identical to those in Fig. 1, except that the ribosomes and initiation factors were replaced by 0.2 ml/ml S-30. Symbols represent: complete system (0); without GTP (A); without GTP but with GMP-PCP (o); without ApUpG (X).
5 VOL. 57, 1967 BIOCHEMISTRY: HERSHEY AND THACH 763 most, less than half of this could be due to metsrnam. Moreover, it is probable that the pro- COMLETE portion of met-srnam bound is much lower z 12,c than this upper limit, since the binding of this /v w species is very poor at 0.01 M g++."5 Recently, this experiment has been repeated,f using purified F-met-sRNAF, with a similar re- '4 sult. Moreover, it has been shown that the F-met-sRNAF prebound to ribosomes in the ab- sence of GTP (in which state it is unreactive 0 10 L TIME, MIN. with puromyciin; see below) can subsequently be activated by the addition of GTP, with the FIG. 5.-Rate of binding of F-mets1RNA to ribosomes. Reactioin coinresult that it now reacts rapidly with puro- ditionis are described inl Materials and mycin. These experiments with purified F-met- Methods. Symbols represent: complete system (0); without GTP srnaf will be reported elsewhere. (a); Thus it may without ApUpG (o). be tentatively concluded that GTP affects slightly, if at all, the rate of binding of F-met-sRNAF to ribosomes. This implies that the GTP-dependent reaction occurs subsequent to the binding step. A further investigation of this point is in progress. Preincubation with GTP in the absence of puromycin: Having obtained evidence that GTP is probably involved in a step subsequent to the binding step, we next sought to determine whether the presence of puromycin was required for the action of GTP. To test this possibility, experiments were conducted in which the ribosomes, charged srna, and factor were preincubated in the presence or absence of GTP prior to the addition of puromycin. The results of these experiments are shown in Figure 6. First, it is evident that preincubation without GTP, for a time sufficient to allow near-maximal binding of srna to ribosomes (8 min), had little or no effect on the subsequent rate of F-met-puro synthesis (puromycin and GTP were added simultaneously after preincubation). In contrast, inclusion of GTP in the preincubation mixture resulted in a very fast spurt of F-met-puro synthesis when puromycin was added, the extent of this rapid incorporation being greater the longer the preincubation. This result indicates that the GTP reaction proceeds in the absence of puromycin, and gives rise to an activated complex which then reacts extremely fast with added puromycin. The time course of this GTP reaction in the absence of puromycin can be obtained by plotting the magnitude of the initial spurt as a function of preincubation time. Although not shown here, this time course is superimposable on that obtained without preincubation (lower curve, Fig. 6), indicating that the GTP reaction is rate-determining in the absence of preincubation and that this rate is unaffected by the presence of puromycin. A further indication that the step involving GTP occurs prior to and independent of the actual reaction of puromycin with F-met-sRNA (that is, the formation of the amide bond) is obtained from experiments in which GMP-PCP was added after preincubation with GTP but before the addition of puromycin. If the GTP reaction were essentially completed during the preincubation period, then the subsequent addition of GMAIP-PCP should not affect the magnitude of the spurt of F-met-puro formed upon the addition of puromycin. That this is the case is
6 764 BIOCHEMISTRY: HERSHEY AND THACH PROC. N. A. S. evident from Figure 7A. The addition of GMP-PCP after preincubation with GTP does not alter the height of the spurt (obtained by extrapolation to zero time), whereas inclusion of GMP-PCP during preincubation reduces it considerably. A control reaction (Fig. 7B) shows the inhibitory effect of GMIP-PCP in the absence of preincubation. Discussion.-The results presented above demonstrate that GTP is required for the formation of F-met-puro, that this reaction shows the same optimum Mg++ concentration as the initiation reaction in protein synthesis,", 13, 16 and that it is not an artifact caused by purification. Moreover, evidence has been obtained which suggests that the reaction involving GTP occurs subsequent to the binding of F-met-sRNA to ribosomes but prior to the actual formation of the amide bond between formylmethionine and puromycin. There are several model reaction mechanisms which can account for the above 0 TIME, MIN. FIG. 6.-Preincubations in the absence of puromycin. The solid lines show the extent of formation of F-met-puro under a variety of conditions of preincubationl. The final concentrations of components in the reaction mixtures are the same as those described in Materials and Methods. The open symbols represent preincubations in the presence of GTP for the -following times: 8 mmn (0); 4 mi (A); 2 min (n); 1lmin (V), The closed symbols represent the corresponding reactions in which GTP was omitted during preincubation, but added later at zero time with the puromycin. The symbol (X) represents no preincubation at all. The dashed lines are extrapolations to zero time and can be used to estimate the extent of the fast spurt of F- met-puro formation. TIME, MIN. FIG. 7.-Lack of inhibition by (GMP-PCP of spurt of F-met-puro formation. Reaction conditions are similar to those in Fig. 6, except the GTP concentration was 0.3 mm in all the incubations, and the GMP-PCP concentration was 2 mm whenever added. Preincubations were 20 mi and purom cin was added at zero time. The figure shows the extent of formation of F-met-puro with time. (A) Symbols represent: preincubation without GMP-PCP, then only puromycin added at zero time (a); preincubation without GMP- -PCP, but (MP-PCP and puromycin added at zero time (n); preincubation with GMP- PCP, then puromycin added at zero time (A). (B) Controls. The rate of formation of F-met-puro without any preincubation is shown in the presence (o) and in the absence (0) of GMP-PCP.
7 VOL. 57, 1967 BIOCHEMISTRY: HERSHEY AND THACH 765 facts. Of these we favor the following, which may be termed the "single entry site model." The salient feature of this scheme is the postulate that with natural, undamaged ribosomes, the F-met-sRNA first binds to the A site, and not to the P site, as previously supposed.1' 2 This binding probably does not involve the supernatant factors4 or GTP, but may well require one or both initiation factors."7 18 Indeed, preliminary results obtained in our laboratory19 show a strong stimulation of F-met-sRNA binding, as well as F-met-puro formation, by the addition of partially purified initiation factors. This result confirms the findings of Salas et al.18 After this initial binding at the A site, we propose that GTP is involved in a transfer step which moves the F-met-sRNA from the A to the P site. This step is completely analogous to the transfer step postulated by Traut and M\onro20 in the case of bound polyphenylalanyl-srna. It probably requires one or more of the supernatant factors,4 particularly the one associated with GTPase activity. Once the F-met-sRNA has moved to the P site, the A site is available for the binding of puromycin or aminoacyl-srna, which then reacts with the adjacent F-met- srna to give either F-met-puro or formylmethionyl-aminoacyl-srna, respectively. It should be noted that this model is similar to that proposed by Heinz and Schweet2' for initiation in the rabbit reticulocyte system. While this mechanism is in accord with the results presented above, it does not account for the low level of F-met-puro formation observed in the absence of GTP nor for the result obtained with frozen (damaged) ribosomes, where there is no detectable effect either of GTP or of GMP-PCP on the rate of reaction at 10 mm MIg++. These observations suggest the possibility that under certain conditions F-met-sRNA can bind directly to the P site without the involvement of GTP, albeit at a very low rate. Further work is required to verify this point. However, whatever may be the explanation for these discrepancies, it seems clear that the physiologically significant mechanism in F-met-puro synthesis requires GTP. One of the major conceptual difficulties raised by this model is that it does not explain how a single codon, AUG, can code for two different amino acids (methionine and formylmethionine) without confusion. As we have previously shown,22 in the initiation of polypeptide synthesis AUG is read exclusively as a formylmethionine codon; no free methionine is incorporated. At presentwecan onlyspeculate as to how this distinction might be accomplished. One possibility is that the initiation factors alter the specificity of the A site such that only F-met-sRNA can be bound. Alternatively, the specificity of the A site may depend on whether the adjacent P site is occupied by a peptidyl-srna. If the P site is occupied, then the A site might accept only aminoacyl-srna's; if it is vacant, then the A site might be altered such that it would accept only F-met-sRNA. We are currently investigating several of these possibilities. A second general model which would account for the GTP dependence of F-metpuro synthesis involves the postulate that GTP activates bound F-met-sRNA by some means other than the site transfer mechanism. This activation would probably involve the hydrolysis of GTP, rather than an allosteric interaction, since G'i\IP-PCP (which presumably cannot be hydrolyzed6) is a strong competitive inhibitor of the reaction. This "chemical activation" model would allow the direct binding of F-met-sRNA to the P site. This is one of the most important features of previous models1' 12 as it affords a good explanation of how AUG can code
8 ,-66 BIOCHEMISTRY: HERSHEY AND THACH PROC. N. A. S. unambiguously for formylmethionine in initiation (the basic proposal is that F- met-srna can bind only to the P site, whereas met-srna can bind initially only to the A site). The major difficulty with the chemical activation model is that it requires the existence of two very different types of reactions involving GTP: (a) the activation of F-met-sRNA in initiation and (b) the normal site transfer reaction in the process of chain elongation.20 However, more complicated variations of this model can be devised to eliminate this problem. Finally, attention should be drawn to the proposal of Seeds and Conway23 that a GTP-dependent reaction expels uncharged srna from one or more sites on the ribosome. It seems possible that the ribosomes as prepared above contain ull- (harged srina which blocks either or both binding sites. Hence, GTP may be required to clear these sites before the reaction between F-met-sRNA and puromyciin can take place. Summary.-The reaction between F-met-sRNA and puromycin in the presence of ribosomes, initiation factors, and ApUpG to form F-met-puro requires GTP, and is inhibited by GMPIP-PCP. We are indebted to Miss Nadia Mykolajewycz and Mrs. K. F. Dewey for expert technical assistance. We also wish to thank Drs. Paul Doty and P. C. Zamecnik for advice and encouragement during the course of these experiments and in the preparation of the manuscript. * Supported by research grants from the American Cancer Society, Inc. (E-170A and E-51) and from the National Institutes of Health (HD-01229). This is publication No of the Cancer Commission of Harvard University. 1 Bretscher, M. S., and K. A. Marcker, Nature, 211, 380 (1966). 2 Zamir, A., P. Leder, and D. Elson, these PROCEEDINGS, 56, 1794 (1966). 3 Maden, B. E. H., R. R. Traut, and R. E. Monro, in Abstracts, Federation of European Biochemical Societies, Third Meeting, Warsaw (1966), p Nishizuka, Y., and F. Lipmann, Arch. Biochem. Biophys., 116, 344 (1966). 5 Thach, R. E., and K. F. Dewey, manuscript in preparation. 6 Hershey, J. W. B., and R. E. Monro, J. Mol. Biol., 18, 68 (1966). 7 Capecchi, M. R., and G. Gussin, Science, 149, 417 (1965). 8 Ganoza, M. C., private communication. 9 Holley, R. W., J. Apgar, B. P. Doctor, J. Farrow, M. Marini, and S. Merrill, J. Biol. Chem., 236, 200 (1961). 10 Leder, P., and H. Bursztyn, Bwchem. Biophys. Res. Commun., 25, 233 (1966). 11 Nirenberg, M. W., and P. Leder, Science, 145, 1399 (1964). 12 Sundararajan, T. A., and R. E. Thach, J. Mol. Biol., 19, 74 (1966). 13 Brown, J. C., and It. E. Thach, unpublished experiments. 14 Capecchi, M. R., these PROCEEDINGS, 55, 1517 (1966). 15 Clark, B. F. C., and K. A. Marcker, J. Mol. Biol., 17, 394 (1966). 16 Kolakofsky, 1)., and T. Nakamoto, these PROCEEDINGS, 56, 1786 (1966). 17 Stanley, W. M., Jr., AI. Salas, A. J. Wahba, and S. Ochoa, these PIROCEEDINNGs, 56, 290 (1966). 18 Salas, M\., MI. B. Hille, J. A. Last, A. J. Wahba, and S. Ochoa, these PROCEEDINGS, 57, 387 (1967). 19 Sarkar, S., and R. E. Thach, unpublished results. 20 Traut, R. R., and R. E. Monro, J. Mol. Biol., 10, 63 (1964). 21 Heinz, R., and R. Schweet, in Cold Spring Harbor Symposium on Quantitative Biology, vol. 31, in press. 22 Thach, R. E., K. F. Dewey, J. C. Brown, and P. Doty, Science, 153, 416 (1966). 23Seeds, N. W.. and T. W. Conway, Biochem. Biophys. Res. Commun., 23, 111 (1966).
to 370C in a matter of seconds. Materials and Methods.-Yeast spheroplasts were prepared, resuspended to a concentration
A MUTANT OF YEAST APPARENTLY DEFECTIVE IN THE INITIATION OF PROTEIN SYNTHESIS* BT LELAND H. HARTWELLt AND CALVIN S. MCLAUGHLIN DEPARTMENT OF MOLECULAR AND CELL BIOLOGY, UNIVERSITY OF CALIFORNIA (IRVINE)
More informationBCH401G Lecture 39 Andres
BCH401G Lecture 39 Andres Lecture Summary: Ribosome: Understand its role in translation and differences between translation in prokaryotes and eukaryotes. Translation: Understand the chemistry of this
More informationNimbleGen DNA Methylation Microarrays and Services
NimbleGen DNA Methylation Microarrays and Services Sample Preparation Instructions Outline This protocol describes the process for preparing samples for NimbleGen DNA Methylation microarrays using the
More informationLecture 11 Enzymes: Kinetics
Lecture 11 Enzymes: Kinetics Reading: Berg, Tymoczko & Stryer, 6th ed., Chapter 8, pp. 216-225 Key Concepts Kinetics is the study of reaction rates (velocities). Study of enzyme kinetics is useful for
More information6 Characterization of Casein and Bovine Serum Albumin
6 Characterization of Casein and Bovine Serum Albumin (BSA) Objectives: A) To separate a mixture of casein and bovine serum albumin B) to characterize these proteins based on their solubilities as a function
More informationPlant Genomic DNA Extraction using CTAB
Plant Genomic DNA Extraction using CTAB Introduction The search for a more efficient means of extracting DNA of both higher quality and yield has lead to the development of a variety of protocols, however
More informationEnzymes: Amylase Activity in Starch-degrading Soil Isolates
Enzymes: Amylase Activity in Starch-degrading Soil Isolates Introduction This week you will continue our theme of industrial microbiologist by characterizing the enzyme activity we selected for (starch
More informationHiPer Ion Exchange Chromatography Teaching Kit
HiPer Ion Exchange Chromatography Teaching Kit Product Code: HTC001 Number of experiments that can be performed: 5 Duration of Experiment: Protocol: 5-6 hours Storage Instructions: The kit is stable for
More informationGlutathione Resin. User Manual. User Manual. Cat. Nos. 635607, 635608, 635619 PT3306-1 (071414)
User Manual Glutathione Resin User Manual United States/Canada 800.662.2566 Asia Pacific +1.650.919.7300 Europe +33.(0)1.3904.6880 Japan +81.(0)77.543.6116 Cat. Nos. 635607, 635608, 635619 PT3306-1 (071414)
More informationTECHNICAL BULLETIN. HIS-Select Nickel Affinity Gel. Catalog Number P6611 Storage Temperature 2 8 C
HIS-Select Nickel Affinity Gel Catalog Number P6611 Storage Temperature 2 8 C TECHNICAL BULLETIN Product Description HIS-Select Nickel Affinity Gel is an immobilized metalion affinity chromatography (IMAC)
More informationAurintricarboxylic Acid, a Preferential Inhibitor of Initiation of Protein Synthesis
JOURNAL OF BACTERIOLOGY, Mar. 1971, p. 902-907 Copyright 1971 American Society for Microbiology Vol. 105, No. 3 Printed in U.S.A. Aurintricarboxylic Acid, a Preferential Inhibitor of Initiation of Protein
More informationGenomic DNA Extraction Kit INSTRUCTION MANUAL
Genomic DNA Extraction Kit INSTRUCTION MANUAL Table of Contents Introduction 3 Kit Components 3 Storage Conditions 4 Recommended Equipment and Reagents 4 Introduction to the Protocol 4 General Overview
More informationClassic Immunoprecipitation
292PR 01 G-Biosciences 1-800-628-7730 1-314-991-6034 technical@gbiosciences.com A Geno Technology, Inc. (USA) brand name Classic Immunoprecipitation Utilizes Protein A/G Agarose for Antibody Binding (Cat.
More informationChromatin Immunoprecipitation (ChIP)
Chromatin Immunoprecipitation (ChIP) Day 1 A) DNA shearing 1. Samples Dissect tissue (One Mouse OBs) of interest and transfer to an eppendorf containing 0.5 ml of dissecting media (on ice) or PBS but without
More informationTECHNICAL BULLETIN. FluoroTag FITC Conjugation Kit. Product Number FITC1 Storage Temperature 2 8 C
FluoroTag FITC Conjugation Kit Product Number FITC1 Storage Temperature 2 8 C TECHNICAL BULLETIN Product Description The FluoroTag FITC Conjugation Kit is suitable for the conjugation of polyclonal and
More informationMagExtractor -Genome-
Instruction manual MagExtractor-Genome-0810 F0981K MagExtractor -Genome- NPK-101 100 preparations Store at 4 C Contents [1] Introduction [2] Components [3] Materials required [4] Protocol 1. Purification
More informationAn In-Gel Digestion Protocol
An In-Gel Digestion Protocol This protocol describes the digestion of a protein present in an SDS-PAGE gel band with trypsin. The band can be taken from either a 1D or 2D electrophoresis gel. Reagents
More informationPeptide Antibody Production
Peptide Antibody Production A) Peptide BioSynthesis (http://www.biosyn.com, 800-227-0627) B) Conjugation of peptide to KLH (Imject Maleimide Activated KLH, PIERCE=Thermo #77605, 10 mg) C) Peptide affinity
More informationExperiment 10 Enzymes
Experiment 10 Enzymes Enzymes are proteins that act as catalysts for biological reactions. Enzymes, like all catalysts, speed up reactions without being used up themselves. They do this by lowering the
More informationTOTAL PROTEIN FIBRINOGEN
UNIT: Proteins 16tproteins.wpd Task Determination of Total Protein, Albumin and Globulins Objectives Upon completion of this exercise, the student will be able to: 1. Explain the ratio of albumin and globulin
More informationExperiment 7 (Lab Period 8) Quantitative Determination of Phosphatase Activity
Experiment 7 (Lab Period 8) Quantitative Determination of Phosphatase Activity Phosphatases are enzymes that catalyze the hydrolysis of organic-phosphate compounds, releasing inorganic phosphate from the
More informationLecture 4. Polypeptide Synthesis Overview
Initiation of Protein Synthesis (4.1) Lecture 4 Polypeptide Synthesis Overview Polypeptide synthesis proceeds sequentially from N Terminus to C terminus. Amino acids are not pre-positioned on a template.
More informationChapter 8: An Introduction to Metabolism
Chapter 8: An Introduction to Metabolism Name Period Concept 8.1 An organism s metabolism transforms matter and energy, subject to the laws of thermodynamics 1. Define metabolism. The totality of an organism
More informationChromatin Immunoprecipitation
Chromatin Immunoprecipitation A) Prepare a yeast culture (see the Galactose Induction Protocol for details). 1) Start a small culture (e.g. 2 ml) in YEPD or selective media from a single colony. 2) Spin
More informationGeneral Properties Protein Nature of Enzymes Folded Shape of Enzymes H-bonds complementary
Proteins that function as biological catalysts are called enzymes. Enzymes speed up specific metabolic reactions. Low contamination, low temperature and fast metabolism are only possible with enzymes.
More informationThis laboratory explores the affects ph has on a reaction rate. The reaction
Joy Paul Enzyme Catalyst lab Abstract: This laboratory explores the affects ph has on a reaction rate. The reaction studied was the breakdown of hydrogen peroxide catalyzed by the enzyme peroxidase. Three
More informationDNA SPOOLING 1 ISOLATION OF DNA FROM ONION
DNA SPOOLING 1 ISOLATION OF DNA FROM ONION INTRODUCTION This laboratory protocol will demonstrate several basic steps required for isolation of chromosomal DNA from cells. To extract the chromosomal DNA,
More informationChapter 8: Energy and Metabolism
Chapter 8: Energy and Metabolism 1. Discuss energy conversions and the 1 st and 2 nd law of thermodynamics. Be sure to use the terms work, potential energy, kinetic energy, and entropy. 2. What are Joules
More information50 g 650 L. *Average yields will vary depending upon a number of factors including type of phage, growth conditions used and developmental stage.
3430 Schmon Parkway Thorold, ON, Canada L2V 4Y6 Phone: 866-667-4362 (905) 227-8848 Fax: (905) 227-1061 Email: techsupport@norgenbiotek.com Phage DNA Isolation Kit Product # 46800, 46850 Product Insert
More informationTransformAid Bacterial Transformation Kit
Home Contacts Order Catalog Support Search Alphabetical Index Numerical Index Restriction Endonucleases Modifying Enzymes PCR Kits Markers Nucleic Acids Nucleotides & Oligonucleotides Media Transfection
More informationSOLIDscript Solid Phase cdna Synthesis Kit Instruction Manual
Toll Free: 866-252-7771 752A Lincoln Blvd. Phone: 732-469-7771 Fax: 732-469-7782 Middlesex, NJ 08846 Web: www.purebiotechllc.com SOLIDscript Solid Phase cdna Synthesis Kit Instruction Manual Product: SOLIDscript
More information1. A covalent bond between two atoms represents what kind of energy? a. Kinetic energy b. Potential energy c. Mechanical energy d.
1. A covalent bond between two atoms represents what kind of energy? a. Kinetic energy b. Potential energy c. Mechanical energy d. Solar energy A. Answer a is incorrect. Kinetic energy is the energy of
More informationHuman serum albumin (HSA) nanoparticles stabilized with. intermolecular disulfide bonds. Supporting Information
Human serum albumin (HSA) nanoparticles stabilized with intermolecular disulfide bonds Wentan Wang, Yanbin Huang*, Shufang Zhao, Ting Shao and Yi Cheng* Department of Chemical Engineering, Tsinghua University,
More informationFirst Strand cdna Synthesis
380PR 01 G-Biosciences 1-800-628-7730 1-314-991-6034 technical@gbiosciences.com A Geno Technology, Inc. (USA) brand name First Strand cdna Synthesis (Cat. # 786 812) think proteins! think G-Biosciences
More informationLecture 3: Enzyme kinetics
Computational Systems Biology Lecture 3: Enzyme kinetics Fri 19 Jan 2009 1 Images from: D. L. Nelson, Lehninger Principles of Biochemistry, IV Edition, W. H. Freeman ed. A. Cornish-Bowden Fundamentals
More informationExperimental procedures. Solid phase peptide synthesis (SPPS)
Electronic Supplementary Material (ESI) for Organic & Biomolecular Chemistry This journal is The Royal Society of Chemistry 214 Experimental procedures Solid phase peptide synthesis (SPPS) Solid phase
More informationKevin Bogart and Justen Andrews. Extraction of Total RNA from Drosophila. CGB Technical Report 2006-10 doi:10.2506/cgbtr-200610
Kevin Bogart and Justen Andrews Extraction of Total RNA from Drosophila CGB Technical Report 2006-10 doi:10.2506/cgbtr-200610 Bogart K and Andrews J. 2006. Extraction of Total RNA from Drosophila. CGB
More informationRT-PCR: Two-Step Protocol
RT-PCR: Two-Step Protocol We will provide both one-step and two-step protocols for RT-PCR. We recommend the twostep protocol for this class. In the one-step protocol, the components of RT and PCR are mixed
More informationELUTION OF DNA FROM AGAROSE GELS
ELUTION OF DNA FROM AGAROSE GELS OBTECTIVE: To isolate specific bands or regions of agarose-separated DNA for use in subsequent experiments and/or procedures. INTRODUCTION: It is sometimes necessary to
More informationFactors Affecting Enzyme Activity
INTRODUCTION Factors Affecting Enzyme Activity The chemical reactions occurring in living things are controlled by enzymes. An enzyme is a protein in the cell which lowers the activation energy of a catalyzed
More informationGRS Plasmid Purification Kit Transfection Grade GK73.0002 (2 MaxiPreps)
1 GRS Plasmid Purification Kit Transfection Grade GK73.0002 (2 MaxiPreps) (FOR RESEARCH ONLY) Sample : Expected Yield : Endotoxin: Format : Operation Time : Elution Volume : 50-400 ml of cultured bacterial
More informationCopyright The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Two Forms of Energy
Module 2D - Energy and Metabolism Objective # 19 All living organisms require energy for survival. In this module we will examine some general principles about chemical reactions and energy usage within
More informationACID-BASE TITRATIONS: DETERMINATION OF CARBONATE BY TITRATION WITH HYDROCHLORIC ACID BACKGROUND
#3. Acid - Base Titrations 27 EXPERIMENT 3. ACID-BASE TITRATIONS: DETERMINATION OF CARBONATE BY TITRATION WITH HYDROCHLORIC ACID BACKGROUND Carbonate Equilibria In this experiment a solution of hydrochloric
More informationPrepTip. Reverse Phase PrepTip User Guide
PrepTip Reverse Phase PrepTip User Guide All text, photographs and illustrations are copyrighted by Harvard Apparatus, Inc. 2004. PrepTip is a trademark of Harvard Apparatus, Inc. Harvard Apparatus 84
More informationRT31-020 20 rxns. RT31-100 100 rxns TRANSCRIPTME Enzyme Mix (1) 40 µl 2 x 50 µl 5 x 40 µl
Components RT31-020 20 rxns RT31-050 50 rxns RT31-100 100 rxns TRANSCRIPTME Enzyme Mix (1) 40 µl 2 x 50 µl 5 x 40 µl 2x RT Master Mix (2) 200 µl 2 x 250 µl 5 x 200 µl RNase H (E. coli) 20 µl 2 x 25 µl
More informationEffect of temperature and ph on the enzymatic activity of salivary amylase
Effect of temperature and ph on the enzymatic activity of salivary amylase Gae Khalil Rodillas, Nonia Carla Ysabel Samson, Raphael Jaime Santos* and Brylle Tabora Department of Biological Sciences, College
More informationRNA/ml.'4. equal to that of the monomer. A symmetrical, double-cloverleaf 30%.
DIMERS OF ALANINE TRANSFER RNA WITH ACCEPTOR ACTIVITY* BY JOANN S. LOEHR AND ELIZABETH B. KELLER ITHACA, NEW YORK Communicated by Robert W. Holley, August 30, 1968 With the elucidation of the nucleotide
More informationRapid GST Inclusion Body Solubilization and Renaturation Kit
Product Manual Rapid GST Inclusion Body Solubilization and Renaturation Kit Catalog Number AKR-110 FOR RESEARCH USE ONLY Not for use in diagnostic procedures Introduction Bacteria are widely used for His
More informationProtein Precipitation Protocols
Protein Precipitation Protocols Notes: All reagents need to high purity/hplc quality. All tubes used should be new or hand cleaned thoroughly with Micro90 detergent. High quality water needs to be used
More informationCovalent Conjugation to Cytodiagnostics Carboxylated Gold Nanoparticles Tech Note #105
Covalent Conjugation to Cytodiagnostics Carboxylated Gold Nanoparticles Tech Note #105 Background Gold nanoparticle conjugates have been widely used in biological research and biosensing applications.
More informationPCR and Sequencing Reaction Clean-Up Kit (Magnetic Bead System) 50 preps Product #60200
3430 Schmon Parkway Thorold, ON, Canada L2V 4Y6 Phone: 866-667-4362 (905) 227-8848 Fax: (905) 227-1061 Email: techsupport@norgenbiotek.com PCR and Sequencing Reaction Clean-Up Kit (Magnetic Bead System)
More informationQuality. Now Certified to ISO 9001:2008
Quality Now Certified to ISO 90012008 Quality Policy It is Peptides International's goal is to achieve complete customer satisfaction by addressing customer needs and delivering what we promise. The company
More informationAnnouncements. Chapter 15. Proteins: Function. Proteins: Function. Proteins: Structure. Peptide Bonds. Lab Next Week. Help Session: Monday 6pm LSS 277
Lab Next Week Announcements Help Session: Monday 6pm LSS 277 Office Hours Chapter 15 and Translation Proteins: Function Proteins: Function Enzymes Transport Structural Components Regulation Communication
More informationCatalysis by Enzymes. Enzyme A protein that acts as a catalyst for a biochemical reaction.
Catalysis by Enzymes Enzyme A protein that acts as a catalyst for a biochemical reaction. Enzymatic Reaction Specificity Enzyme Cofactors Many enzymes are conjugated proteins that require nonprotein portions
More informationEnzyme Action: Testing Catalase Activity
Enzyme Action: Testing Catalase Activity Experiment 6A Many organisms can decompose hydrogen peroxide (H 2 O 2 ) enzymatically. Enzymes are globular proteins, responsible for most of the chemical activities
More informationMULTIPLE CHOICE QUESTIONS
MULTIPLE CHOICE QUESTIONS 1. Most components of energy conversion systems evolved very early; thus, the most fundamental aspects of energy metabolism tend to be: A. quite different among a diverse group
More informationMarmara Üniversitesi Fen-Edebiyat Fakültesi Kimya Bölümü / Biyokimya Anabilim Dalı PURIFICATION AND CHARACTERIZATION OF PROTEINS
EXPERIMENT VI PURIFICATION AND CHARACTERIZATION OF PROTEINS I- Protein isolation and dialysis In order to investigate its structure and properties a protein must be obtained in pure form. Since proteins
More informationWizard DNA Clean-Up System INSTRUCTIONS FOR USE OF PRODUCT A7280.
Technical Bulletin Wizard DNA Clean-Up System INSTRUCTIONS FOR USE OF PRODUCT A7280. PRINTED IN USA. Revised 4/06 AF9TB141 0406TB141 Wizard DNA Clean-Up System All technical literature is available on
More informationIntroduction to Proteins and Enzymes
Introduction to Proteins and Enzymes Basics of protein structure and composition The life of a protein Enzymes Theory of enzyme function Not all enzymes are proteins / not all proteins are enzymes Enzyme
More informationHow To Make A Tri Reagent
TRI Reagent For processing tissues, cells cultured in monolayer or cell pellets Catalog Number T9424 Store at room temperature. TECHNICAL BULLETIN Product Description TRI Reagent is a quick and convenient
More informationAnn.wellhouse@TouchStoneScience.net 1. Enzyme Function
Ann.wellhouse@TouchStoneScience.net 1 Enzyme Function National Science Standards Science as Inquiry: Content Standard A: As a result of activities in grades 9-12, all students should develop: Abilities
More informationReview of Chemical Equilibrium 7.51 September 1999. free [A] (µm)
Review of Chemical Equilibrium 7.51 September 1999 Equilibrium experiments study how the concentration of reaction products change as a function of reactant concentrations and/or reaction conditions. For
More informationIn vitro analysis of pri-mirna processing. by Drosha-DGCR8 complex. (Narry Kim s lab)
In vitro analysis of pri-mirna processing by Drosha-DGCR8 complex (Narry Kim s lab) 1-1. Preparation of radiolabeled pri-mirna transcript The RNA substrate for a cropping reaction can be prepared by in
More informationDNA ligase. ATP (or NAD+)
DNA Ligase enzyme catalysing formation of phosphodiesteric bound between group 3 -OH of one end of DNA molecule and group 5 -phosphate of the second end of DNA DNA ligase ATP (or NAD+) Ligase cofactors
More informationA Sensitive Assay Method of Creatine Kinase-MB Isoenzyme in Human Serum Using Anti-CK-M Antiserum and Firefly Luciferase*
Vol. 27. No. 3. 1983 (151) A Sensitive Assay Method of Creatine Kinase-MB Isoenzyme in Human Serum Using Anti-CK-M Antiserum and Firefly Luciferase* Toshio Imai**, Mitsutaka Yoshida**, Kohichi Suzuki***
More informationProcedure for RNA isolation from human muscle or fat
Procedure for RNA isolation from human muscle or fat Reagents, all Rnase free: 20% SDS DEPC-H2O Rnase ZAP 75% EtOH Trizol Chloroform Isopropanol 0.8M NaCitrate/1.2M NaCl TE buffer, ph 7.0 1. Homogenizer-probe
More informationHighPure Maxi Plasmid Kit
HighPure Maxi Plasmid Kit For purification of high pure plasmid DNA with high yields www.tiangen.com PP120109 HighPure Maxi Plasmid Kit Kit Contents Storage Cat.no. DP116 Contents RNaseA (100 mg/ml) Buffer
More informationDP419 RNAsimple Total RNA Kit. RNAprep pure Series. DP501 mircute mirna Isolation Kit. DP438 MagGene Viral DNA / RNA Kit. DP405 TRNzol Reagent
Overview of TIANGEN Products DP419 RNAsimple Total RNA Kit DP430 RNAprep pure Kit(For Cell/Bacteria) DP315/DP315-R TIANamp Virus DNA/RNA Kit DP431 RNAprep pure Kit (For Tissue) Silica-membrane Technology
More informationLecture 5. 1. Transfer of proper aminoacyl-trna from cytoplasm to A-site of ribosome.
Elongation & Termination of Protein Synthesis (5.1) Lecture 5 1. INITIATION Assembly of active ribosome by placing the first mrna codon (AUG or START codon) near the P site and pairing it with initiation
More informationBiology 29 Cell Structure and Function Spring, 2009 Springer LABORATORY 2:CHLOROPLASTS AND PHOTOREDUCTION
Biology 29 Cell Structure and Function Spring, 2009 Springer LABORATORY 2:CHLOROPLASTS AND PHOTOREDUCTION In this laboratory we will purify chloroplasts from spinach by differential centrifugation, then
More informationNucleic Acid Purity Assessment using A 260 /A 280 Ratios
Nucleic Acid Purity Assessment using A 260 /A 280 Ratios A common practice in molecular biology is to perform a quick assessment of the purity of nucleic acid samples by determining the ratio of spectrophotometric
More informationThe fastest spin-column based procedure for purifying up to 10 mg of ultra-pure endotoxin-free transfection-grade plasmid DNA.
INSTRUCTION MANUAL ZymoPURE Plasmid Gigaprep Kit Catalog Nos. D4204 (Patent Pending) Highlights The fastest spin-column based procedure for purifying up to 10 mg of ultra-pure endotoxin-free transfection-grade
More informationLab 10: Bacterial Transformation, part 2, DNA plasmid preps, Determining DNA Concentration and Purity
Lab 10: Bacterial Transformation, part 2, DNA plasmid preps, Determining DNA Concentration and Purity Today you analyze the results of your bacterial transformation from last week and determine the efficiency
More informationEnzymes. Enzyme Structure. Enzyme Classification. CHEM464/Medh, J.D. Reaction Rate and Enzyme Activity
Enzymes Enzymes are biological catalysts They are not consumed or altered during the reaction They do not change the equilibrium, just reduce the time required to reach equilibrium. They increase the rate
More informationRIBOPROTECT. RNase Inhibitor RT33-020, RT33-100
RIBOPROTECT RT33-020, RT33-100 RT33-020, RT33-100 RIBOPROTECT The RIBOPROTECT is a recombinant protein isolated and purified from Escherichia coli. It inhibits ribonuclease (RNase) activity of enzymes
More informationTranslation. Translation: Assembly of polypeptides on a ribosome
Translation Translation: Assembly of polypeptides on a ribosome Living cells devote more energy to the synthesis of proteins than to any other aspect of metabolism. About a third of the dry mass of a cell
More informationChem 405 Biochemistry Lab I Experiment 2 Quantitation of an unknown protein solution.
Chem 405 Biochemistry Lab I Experiment 2 Quantitation of an unknown protein solution. Introduction: The determination of protein concentration is frequently required in biochemical work. Several methods
More informationRubisco; easy Purification and Immunochemical Determination
Rubisco; easy Purification and Immunochemical Determination Ulrich Groß Justus-Liebig-Universität Gießen, Institute of Plant Nutrition, Department of Tissue Culture, Südanlage 6, D-35390 Giessen e-mail:
More informationAurora Forensic Sample Clean-up Protocol
Aurora Forensic Sample Clean-up Protocol 106-0008-BA-D 2015 Boreal Genomics, Inc. All rights reserved. All trademarks are property of their owners. http://www.borealgenomics.com support@borealgenomics.com
More informationEnergy & Enzymes. Life requires energy for maintenance of order, growth, and reproduction. The energy living things use is chemical energy.
Energy & Enzymes Life requires energy for maintenance of order, growth, and reproduction. The energy living things use is chemical energy. 1 Energy exists in two forms - potential and kinetic. Potential
More informationOptimal Conditions for F(ab ) 2 Antibody Fragment Production from Mouse IgG2a
Optimal Conditions for F(ab ) 2 Antibody Fragment Production from Mouse IgG2a Ryan S. Stowers, 1 Jacqueline A. Callihan, 2 James D. Bryers 2 1 Department of Bioengineering, Clemson University, Clemson,
More informationMeasuring Protein Concentration through Absorption Spectrophotometry
Measuring Protein Concentration through Absorption Spectrophotometry In this lab exercise you will learn how to homogenize a tissue to extract the protein, and then how to use a protein assay reagent to
More informationDNA Assembly and Enzymatic Cutting in Solutions: A Gold Nanoparticle Based SERS Detection Strategy
Supporting Information DNA Assembly and Enzymatic Cutting in Solutions: A Gold Nanoparticle Based SERS Detection Strategy Elizabeth Crew 1, Hong Yan 1, Liqin Lin 1, Jun Yin 1, Zakiya Skeete 1, Timur Kotlyar
More informationEffects of Antibiotics on Bacterial Growth and Protein Synthesis: Student Laboratory Manual
Effects of Antibiotics on Bacterial Growth and Protein Synthesis: Student Laboratory Manual I. Purpose...1 II. Introduction...1 III. Inhibition of Bacterial Growth Protocol...2 IV. Inhibition of in vitro
More informationsynthesis, Sm stimulates the incorporation of isoleucine, leucine, and small (SmR) bacteria are relatively resistant to these Sm-induced
THE CONTRIBUTION OF DNA TO TRANSLATION ERRORS INDUCED BY STREPTOMYCIN IN VITRO BY T. E. LIKOVER AND C. G. KURLAND ZOOLOGY DEPARTMENT, UNIVERSITY OF WISCONSIN, MADISON Communicated by Robert H. Burris,
More informationMs. Campbell Protein Synthesis Practice Questions Regents L.E.
Name Student # Ms. Campbell Protein Synthesis Practice Questions Regents L.E. 1. A sequence of three nitrogenous bases in a messenger-rna molecule is known as a 1) codon 2) gene 3) polypeptide 4) nucleotide
More informationAffi-Prep Protein A Matrix Instruction Manual
Affi-Prep Protein A Matrix Instruction Manual Catalog Numbers 156-0005 156-0006 Bio-Rad Laboratories, 2000 Alfred Nobel Dr., Hercules, CA 94547 LIT-230 Rev B Table of Contents Section 1 Introduction...1
More informationChemical Basis of Life Module A Anchor 2
Chemical Basis of Life Module A Anchor 2 Key Concepts: - Water is a polar molecule. Therefore, it is able to form multiple hydrogen bonds, which account for many of its special properties. - Water s polarity
More information= 1.038 atm. 760 mm Hg. = 0.989 atm. d. 767 torr = 767 mm Hg. = 1.01 atm
Chapter 13 Gases 1. Solids and liquids have essentially fixed volumes and are not able to be compressed easily. Gases have volumes that depend on their conditions, and can be compressed or expanded by
More informationGuide to Reverse Phase SpinColumns Chromatography for Sample Prep
Guide to Reverse Phase SpinColumns Chromatography for Sample Prep www.harvardapparatus.com Contents Introduction...2-3 Modes of Separation...4-6 Spin Column Efficiency...7-8 Fast Protein Analysis...9 Specifications...10
More informationThe Theory of HPLC. Gradient HPLC
The Theory of HPLC Gradient HPLC i Wherever you see this symbol, it is important to access the on-line course as there is interactive material that cannot be fully shown in this reference manual. Aims
More informationSeparation of Amino Acids by Paper Chromatography
Separation of Amino Acids by Paper Chromatography Chromatography is a common technique for separating chemical substances. The prefix chroma, which suggests color, comes from the fact that some of the
More informationUltraClean Soil DNA Isolation Kit
PAGE 1 UltraClean Soil DNA Isolation Kit Catalog # 12800-50 50 preps New improved PCR inhibitor removal solution (IRS) included Instruction Manual (New Alternative Protocol maximizes yields) Introduction
More informationStudies with the analogous system in Escherichia coli have shown that mutants
THE ENZYMATIC ACTIVITY ASSOCIATED WITH THE PROTEIN IMMUNOLOGICALLY RELATED TO TRYPTOPHAN SYNTHETASE* BY CHARLES YANOFSKYt AND JOAN STADLERt DEPARTMENT OF MICROBIOLOGY, SCHOOL OF MEDICINE, WESTERN RESERVE
More informationQUANTITATIVE RT-PCR. A = B (1+e) n. A=amplified products, B=input templates, n=cycle number, and e=amplification efficiency.
QUANTITATIVE RT-PCR Application: Quantitative RT-PCR is used to quantify mrna in both relative and absolute terms. It can be applied for the quantification of mrna expressed from endogenous genes, and
More information(From the Department of Biochemistry, University of Nebraska College of Medicine, Omaha)
THE INHIBITION OF THE ADENOSINE TRIPHOSPHATASE ACTIVITY OF ACTOMYOSIN BY MAGNESIUM IONS BY IRVIN BRAVERMAN A.~ SERGIUS MORGULIS (From the Department of Biochemistry, University of Nebraska College of Medicine,
More informationENZYME KINETICS ENZYME-SUBSTRATE PRODUCTS
ENZYME KINETICS INTRODUCTION The study of reaction rates catalyzed by enzymes and the factors affecting them is generally referred to as enzyme kinetics. The basic components of an enzyme catalyzed reaction
More informationProtein extraction from Tissues and Cultured Cells using Bioruptor Standard & Plus
Protein extraction from Tissues and Cultured Cells using Bioruptor Standard & Plus Introduction Protein extraction from tissues and cultured cells is the first step for many biochemical and analytical
More informationTIANquick Mini Purification Kit
TIANquick Mini Purification Kit For purification of PCR products, 100 bp to 20 kb www.tiangen.com TIANquick Mini Purification Kit (Spin column) Cat no. DP203 Kit Contents Contents Buffer BL Buffer PB Buffer
More informationPeptide synthesis, radiolabelling and radiochemical analysis
SUPPLEMENTAL DATA MATERIALS AND METHODS Peptide synthesis, radiolabelling and radiochemical analysis Solid phase synthesis of peptides was carried out on using ABI 433A peptide synthesizer, on a preloaded
More information