Use this document throughout your project particularly when you are:

Managing your Dissertation Use this document throughout your project particularly when you are: Conducting a literature search. Managing references using EndNote. Writing up your dissertation in Word. Completing the final formatting. Getting help Go to online resources and previous IT and Library Skills course materials: IT skills online at fms-itskills.ncl.ac.uk Use this reference booklet and supporting documents. Use the help options in the software. Come to the clinics in March. Email ITSkills.Support@ncl.ac.uk or MedLiaison@ncl.ac.uk with questions. Tips for your dissertation Find references using a bibliographic database rather than Google or Wikipedia. Use EndNote. Use styles, captions and cross-references throughout. Leave section breaks and columns until the VERY END! Seek help if images or tables duplicate themselves throughout your document. Save your document regularly: use Ctrl S. Remember that you can always Undo! 2014 Faculty of Medical Sciences, Newcastle University 1

In this handout Getting help... 1 Tips for your dissertation... 1 Tasks... 4 Getting started... 4 Task 1 Perform a Scopus search... 4 Task 2 Import Scopus references into EndNote... 4 Task 3 Perform a Medline search... 5 Task 4 Import Medline references into EndNote... 5 Task 5 Manage duplicate references... 6 Task 6 Evaluate web resources... 6 Task 7 Format the Word document... 6 A Use your style set... 7 B Apply styles... 7 C Images and tables... 7 D Captions and cross-references... 8 E Insert the in-text references... 8 F Format the bibliography... 8 G Section breaks... 10 H Columns... 10 I Other document tools... 11 J Review your document... 11 K Upload your file for feedback... 11 Tips for bibliographic database searching... 13 Which database?... 13 Searching using Ovid Medline/Embase... 13 Exporting to EndNote... 13 Tips for using EndNote... 14 Show the EndNote tab in Word... 14 Using EndNote on RAS... 14 Inserting authors when manually adding references... 14 Inserting web references... 14 Tips for using Word... 15 Manage your document properly... 15 Citation styles and inserting in-text references... 15 Section breaks and columns... 15 Columns and your dissertation... 15 2 2014 Faculty of Medical Sciences, Newcastle University

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Tasks Getting started In Word, ensure that you have the EndNote tab on the Word ribbon. (If the tab is not shown, see page 14.) Open EndNote and create a new library called dm03.enl. Leave EndNote open, as you will be returning to it later. Task 1 Perform a Scopus search Use Scopus to search for papers on the following subject: What evidence has been published in English in the last 10 years on the epidemiology of cerebral palsy in low birth weight infants? From the University Library homepage (www.ncl.ac.uk/library), click on Databases from the links at the bottom of the page. Select Scopus from the list of databases. Consider your terms, search appropriately, combine results as needed, and limit the results to material in English language published in the last 10 years. Task 2 Import Scopus references into EndNote Import references found into your EndNote library. From the options above the results, click the Select Page Results tickbox. Select Export. Select RIS Format & Citations and abstract information. Click Export, then open the file created. (If prompted, choose the dm03 EndNote library just created.) 4 2014 Faculty of Medical Sciences, Newcastle University

Task 3 Perform a Medline search Use Medline to search for papers on the same subject: What evidence has been published in English in the last 10 years on the epidemiology of cerebral palsy in low birth weight infants? See online video. From the University Library homepage (www.ncl.ac.uk/library), click on Databases from the links at the bottom of the page. Select Ovid from the list of databases and then select the on campus link. In the database list box, choose Ovid MEDLINE(R) without Revisions1996 to [most recent week]. Consider your terms, search appropriately, combine results as needed, and limit the results to material in English language published in the last 10 years. Remember: When using subject searching consider whether you want to Explode either, or both, of the search terms (remember: explode means include narrower terms ). Epidemiology is found in the list of subheadings. A stepwise walkthrough of the literature search is available online. Task 4 Import Medline references into EndNote Import the Medline references into EndNote. Tick the box at the top of the references, to select all References. 2014 Faculty of Medical Sciences, Newcastle University 5

Select Export > Export to EndNote > Citation and Abstract > Export Citation(s). Task 5 Manage duplicate references In EndNote, delete any duplicate references, using References > Find duplicates. The 'Find Duplicates' function only identifies exact matches. In your own database, delete all duplicates. Task 6 Evaluate web resources Use the Intute Training Suite to learn how to assess online resources for academic integrity. Go to the training suite website at www.vtstutorials.co.uk. Search and select the Microbiology tutorial, then choose the 'Judge' link from the black menu bar across the page. Read through the tutorial and stop when you reach the Success section. Now look at the following web pages and decide which is of the highest quality: www.herbschina.com www.bobath.org.uk Add your chosen web resource to your EndNote library. See page 14 for guidelines on web references in EndNote. Task 7 Format the Word document In a web browser go to http://fms-itskills.ncl.ac.uk. Under Biomedical Sciences > Information Skills Assimilation, save the files dm03.docx, dm03.jpg, and dm03.xlsx to your H: drive. 6 2014 Faculty of Medical Sciences, Newcastle University

To save a file from the internet, right click over the hyperlink and choose Save target as Use the accompanying handout to format the document dm03.docx so that it looks similar to but not exactly like the handout. You should follow the order below when completing this exercise AND when you are formatting your own dissertation. A Use your style set Apply the style set that you created in Advanced Images and Document Management to the document. Select your style set from the Design tab > Document Formatting group and select your style from the Custom list. If you do not have your own style set, use the Built-in (Basic (Simple)) style set instead. B Apply styles Following the notes in the annotated example handout, apply all the styles to the document, including Headings and lists. Use styles from the Home tab > Styles group. C Images and tables Insert the figure dm03.jpg and table dm03.xlsx as shown in the annotated example handout. Insert images from the Insert > Picture menu. Copy and paste tables from Excel into Word. Put images In Line with Text ; tables with Text Wrapping set to None. Information about managing images is available online at fms-itskills.ncl.ac.uk/images. 2014 Faculty of Medical Sciences, Newcastle University 7

Use the table styles from the Table Tools tab > Design tab to format the table. D Captions and cross-references Insert captions for your tables and figures. Use the References tab > Captions group > Insert Caption, and choose the appropriate label (Figure/Table). Type in cross-references throughout the document as indicated. E Insert the in-text references Following the example document, insert from EndNote any four journal article references plus the web page reference into the main body of the document, as indicated. When citing references in your own documents, ensure you insert citations at appropriate points in the text. Avoid inserting EndNote references into textboxes. To insert references from EndNote: Place your cursor in the main body of the Word document where the reference is to be inserted, as shown. Go to EndNote and select the citation(s) to insert. Return to your Word document, select the EndNote tab > Insert Citation group, and select the Insert Citation button. Choose Insert Selected Citation(s). F Format the bibliography Use EndNote to format the bibliography into FASEB J with elec source. From the EndNote tab in Word, select FASEB J with elec source from the drop-down Style menu. 8 2014 Faculty of Medical Sciences, Newcastle University

Information Skills Assimilation Managing your dissertation Not all styles will display a URL in the bibliography. FASEB J is one such style, so choose FASEB J with elec source instead. 2014 Faculty of Medical Sciences, Newcastle University 9

G Section breaks Leave tasks G and H to the very end! Show the formatting (paragraph marks, spaces, tabs, breaks etc) by clicking on the icon from the Home tab. Insert section breaks as directed throughout the document. You should use continuous section breaks (CSB) in your document to separate columned areas from full-width sections. Insert a section break by putting the cursor at the beginning of the paragraph where the break is to go. Go to Page Layout tab > Page Setup group > Breaks and choose Continuous. You should place a section break before and after a figure or a table that needs to span two columns. Also, before Abstract (lab)/introduction (lib), and References. Problems? Seek help! H Columns Once you have inserted all continuous section breaks, format the text into columns. Place your cursor in the section of text that should be in columns. You do not need to select the text. Go to the Page Layout tab > Page Setup group > Columns option and choose Two columns. Thoroughly check your layout once you have inserted the columns as your images and tables may look odd! Text in columns will bounce off full-width images/tables: Flow of text Full-width image or table 10 2014 Faculty of Medical Sciences, Newcastle University

I Other document tools Information Skills Assimilation Managing your dissertation Format the header and footer text and insert a page number. Insert an equation into the footnote on page 2. To insert an equation, go to the Insert tab. Insert a symbol and superscript the text as directed. Create an auto-correct entry for one scientific term you will be using in your project and try the abbreviation out. To insert an auto-correct entry, go to the File tab > Options > Proofing > Autocorrect Options Spell and grammar check this document and make any corrections if necessary. J Review your document Check all aspects of your document and get your colleague to comment on it for you, using the checklist provided in the online tutorial: http://fms-itskills.ncl.ac.uk/bms/checklist.html. You should check all technical aspects of your document in this session, such as your use of styles, captions, image and table layout, in-text citations, bibliographic style etc. You should also thoroughly proof-read your own dissertation and check for spelling and grammar errors, inaccuracies, inconsistencies and missing information. Check your word count from the bottom left corner of the Word window and keep within the set limits. K Get instant feedback from Albert Expert If you are working on a cluster PC, follow the link at http://fms-itskills.ncl.ac.uk/bms/feedback.html for instructions on how to get instant feedback on your work. You can use this for feedback during your project too. 2014 Faculty of Medical Sciences, Newcastle University 11

Give us some feedback at http://fms-itskills.ncl.ac.uk/evaluation. 12 2014 Faculty of Medical Sciences, Newcastle University

Tips for bibliographic database searching Which database? Ovid Medline/PubMed indexes material from medical, dental and biomedical journals, published internationally but particularly those from USA. The difference between PubMed and Ovid Medline is primarily interface: Ovid Medline provides Find It functionality for checking online journal subscriptions; PubMed does not (you need to check Library Search). Embase is available via Ovid and works very like Medline. There is some overlap and it covers fewer USA and more European and pharmacology/toxicology-oriented journals. Scopus is wider in coverage, indexing 15,000 journals (plus conference proceedings, trade publications and patents) published internationally in a range of primarily scientific subjects. However, it does not use subject headings. Searching using Ovid Medline/Embase Use subject heading searches to get better results in Medline/Embase. Type your word in and choose the appropriate mapped term from the list presented. Explode determines the subject coverage of the references found and will include all narrower terms in the search. Focus will only find references where the subject(s) searched is considered to be a major element. Exporting to EndNote To export from PubMed to EndNote, choose Send To > Citation Manager > Create File. To export to EndNote from Scopus see page 4, or from Ovid Medline or Embase see page 5. 2014 Faculty of Medical Sciences, Newcastle University 13

Tips for using EndNote Show the EndNote tab in Word In Word, select the File > Options > Add-Ins > Manage: Disabled Items > Go. If EndNote is listed, reactivate. If EndNote is not listed, return to the Add-Ins box > Manage: COM Add-Ins > Go > Add..., then browse to C:\Program Files (x86)\common Files\ResearchSoft\ Cwyw\17. Select the EndNote CWYW.dll file > OK > OK. Using EndNote on RAS When using EndNote via RAS, you must also use the bibliographic databases (Medline, Scopus etc) and Word via RAS in order to download and insert references via EndNote. You can access documents and printers from USB connections using RAS, but please ensure that the USB device is connected before logging in to RAS. Inserting authors when manually adding references Ensure you enter author names appropriately so that EndNote will process them correctly. For personal names, type Surname, Initial.Initial. e.g. Bloggs, J.T. (although other formats are accepted). List multiple authors on separate lines and do not include additional commas or and between authors. For organisation names, include a comma at the end of the name, e.g. Department of Health,. Inserting web references Select the reference type Web page. You should include Author, Year, Title, Access Date, and URL fields (plus Publisher and Last Update Date if appropriate/available). Author might be an organisation (see above). Enter the Access Date consistently and include the year. 14 2014 Faculty of Medical Sciences, Newcastle University

Tips for using Word Manage your document properly Information Skills Assimilation Managing your dissertation Use as few styles as possible from your style set. Edit large images in a photo editor (e.g. IrfanView) before inserting them into your Word document to keep file size down (see page 7 for a link to more information). Use captions throughout. Update captions quickly: select the whole document, right click and select Update Field. Remember to update the cross-references too. Citation styles and inserting in-text references See page 8 for instructions on inserting references and formatting the bibliography in FASEB J with elec source style. Section breaks and columns Use Continuous Section Breaks from the Page Layout tab > Page Setup group > Break option. Insert breaks at the end of a paragraph and delete the blank line. Format columns after proof-reading your text. Remove columns if you find it confusing to edit text or move images around, and reinstate them later. Surround images and tables with section breaks if they are wider than one column, so that they span two columns. More information online at fms-itskills.ncl.ac.uk/howto. Columns and your dissertation You should put your first continuous section break in between your name and your abstract. Your abstract should be part of the column. 2014 Faculty of Medical Sciences, Newcastle University 15