SELÇUK KORKMAZ EDUCATION THESIS DEGREES WORK EXPERIENCE RESEARCH INTERESTS. LANGUAGE and COMPUTER SKILLS

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1 SELÇUK KORKMAZ Hacettepe University Faculty of Medicine Department of Biostatistics, 06100, Sıhhiye/ANKARA Phone: , Fax: EDUCATION Ph.D, Department of Biostatistics, Hacettepe Universiy M.Sc., Department of Biostatistics and Medical Informatics, Ege Universiy B.Sc., Department of Statistics, Ege Universiy THESIS Master: The Use Of Nonlinear Mixed Effects Models in Bioequivalence Studies DEGREES Research Assistant: Hacettepe University, Department of Biostatistics, Research Assistant: Trakya University, Department of Biostatistics, WORK EXPERIENCE , Statistician, Ege University Rectorate Simulation Methods Homology Modeling Computer Aided Drug Design Computational Biology Machine Learning RESEARCH INTERESTS LANGUAGE and COMPUTER SKILLS English: TOEFL 89/120 Windows Office-LaTeX-LyX: Excellent SPSS-Statistica-Minitab- NCSS-PASS-GPower-MedCalc: Excellent R-Orange-Weka-RapidMiner: Excellent Matlab-SAS: Intermediate C-C++, AutoDock, VMD-NAMD: Beginner 1

2 COURSES 1. Medicinal Chemistry from Faculty of Pharmacy, Department of Medicinal Chemistry 2. Drug Design from Faculty of Pharmacy, Department of Medicinal Chemistry 3. Drug Discovery, Development & Commercialization from WORKSHOPS 1. Applied Molecular Modelling in Drug Discovery and Simulation Methods Hacettepe University January Drug Design Symposium Bahcesehir University March 2013 AWARDS, GRANTS and HONORS 1. Best Oral Presentation Award. XXVII International Biometric Conference, Florence, Italy, ÖYP, Travel Grant from ÖYP (1500 TL): 25th National Biophisics Congress, September 2013, Trabzon, Turkey 3. ÖYP, Travel Grant from ÖYP (1000 TL): 15th National Biostatistics Congress, August 2013, Aydın, Turkey 4. ÖYP, Travel Grant from ÖYP (3870 TL): The R User Conference 2013, 9-12 July 2013, Albacete, Spain 5. ÖYP, Travel Grant from ÖYP (428 TL): 14th National Biostatistics Congress, 4-7 September 2012, Kayseri, Turkey 6. Hacettepe University Scientific Research and Development Office: (3000 TL): To attend, 26th International Biometric Conference, August 2012, Kobe/Japan 7. TUBITAK-BIDEB, Travel Grant from TUBITAK: (1100 TL): 6th EMR-IBS Conference, 8-12 May 2011, Crete, Greece 2

3 TALKS and SEMINARS 1. Makine Öğrenimi Yaklaşımı ile Proteinlerin Homoloji Modellemesi, Hacettepe University, Department of Biostatistics, 13 May 2014 (Seminar). 2. Đlaç Sınıflandırılması için Destek Vektör Makineleri ve Yapay Sinir Ağları Yöntemlerinin Karşılaştırılması Hcettepe University, Department of Biostatistics, 16 April 2013 (Seminar). ATTENDED CONGRESS International Congress 1. 2nd International BAU Drug Design Congress, April 2014, Istanbul Turkey 2. International Multidisciplinary Symposium on Drug Research and Development, November 2013, Antalya, Turkey 3. The R User Conference 2013, 9-12 July 2013, Albacete, Spain 4. 26th International Biometric Conference, August 2012, Kobe, Japan 5. 6th EMR-IBS Conference, 8-12 May 2011, Crete, Greece National Congress 1. 25th National Biophysics Congress, September 2013, Trabzon, Turkey National Biostatistics Congress, August 2013, Aydın, Turkey Ulusal Biostatistics Congress, 4-7 September 2012, Kayseri, Turkey PUBLICATIONS Papers in International Journals 1. Alkin Z, Perente I, Ozkaya A, Alp D, Agca A, Aygit ED, Korkmaz S, Yazici AT, Demirok A (2014) Comparison of Efficacy Between Low-fluence and Half-dose Verteporfin Photodynamic Therapy for Chronic Central Serous Chorioretinopathy Journal of Clinical Ophthalmology 2014:8, Korkmaz, S. and Orman, MN. (2012). The Use of Nonlinear Mixed Effects Models in 3

4 Bioequivalence Studies: A Real Data Application. 1:512. doi: /scientificreports.512 Presentations in International Conferences 1. Korkmaz, S., Zararsiz, G., Goksuluk, D.., Saracbasi O, Homology Modeling Using Machine Learning Approach, XXVII International Biometric Conference, Florence, Italy, Zararsiz, G., Goksuluk, D., Korkmaz S., Eldem, V., Unver, T., Classification of RNASeq Data via Bagging Support Vector Machines, XXVII International Biometric Conference, Florence, Italy, Goksuluk, D., Korkmaz, S., Zararsiz, G., Karaagaoglu, E., Ensemble Machine Learning Approach for Biomarker Discovery using Mass-Spectrometry based Proteomics Data, XXVII International Biometric Conference, Florence, Italy, Korkmaz, S., Zararsız, G. and Dalkara S. Drug/Non-Drug Classification Using Machine Learning International Multidisciplinary Symposium on Drug Research and Development, November 2013, Antalya, Turkey 5. Korkmaz, S., Göksülük, D. and Zararsız G. bbrvm: an R package for Ensemble Classification Approaches of Relevance Vector Machines The R User Conference 2013, 9-12 July 2013, Albacete/Spain 6. Arslankoz, S., Korkmaz, S., Netto, GJ. and Baydar DE. Immunoexpression of mtor Pathway Members in Non-Invasive Papillary Urothelial Neoplasms of Bladder Annual Meeting Abstracts, February 2013, USA 7. Korkmaz, S. and Orman, MN. The Use of Nonlinear Mixed Effects Models in Bioequivalence Studies: A Real Data Application 26th International Biometric Conference, August 2012, Kobe, Japan 8. Korkmaz, S. and Orman, MN. A Simulation Study Based on Nonlinear Mixed Effects Models 6th EMR-IBS Conference, 8-12 May 2011, Crete, Greece Presentations in National Conferences 1. Yamasan, BE., Gülyaşar, T., Sipahi, T., Korkmaz, S., ve Palabıyık O. Koroner Arter Hastalığında Anjiyotensinojen M235T ve T174M Gen Polimorfizimlerinin Araştırılması Ve Risk Faktörlerinin Belirlenmesi 25th National Biophisics Congress, September 2013, Trabzon, Türkiye 2. Korkmaz, S., Zararsız, G., Coşgun E., Dalkara S. ve Saraçbaşı, O. Drug/Non-Drug Classification Using Support Vector Machines with Various Feature Selection Strategies 15th National Biostatistics Congress, August 2013, Aydın, Turkey 3. Korkmaz, S. ve Süt, N. Dört Gözlü Kontenjans Tablolarında Yates Düzeltmeli Ki-Kare Testinin Đncelenmesi: Simülasyon Çalışması. 14th National Biostatistics Congress, 4-7 September 2012, Kayseri, Turkey 4

5 4. Korkmaz, S. ve Orman, M. N. Doğrusal Olmayan Karma Etki Modelleri Üzerine Bir Simülasyon Çalışması. 12th National Biostatistics Congress, 28 June - 1 July 2010, Van, Turkey R/Bioconductor Packages and Web Tools 1. Korkmaz S and Goksuluk D MVN: a web-tool for assessing multivariate normality. (web-tool) 2. Zararsiz G., Goksuluk D., Korkmaz S., Eldem, V., Parug-Duru, Đ., Unver, T. and Ozturk, A. MLSeq: Machine Learning Interface for RNA-Seq Data. URL: Vignette: (Bioconductor package) 3. Korkmaz S. MVN: Multivariate Normality Tests. URL: Vignette: (R package) 4. Korkmaz S. royston: Royston s H Test Multivariate Normality Test URL: (R package) ADMINISTERED WEBSITES 1. (since 2014) 2. (since 2013 ) 5