EURO-BASIN Cruise Data transfer to PANGAEA. Janine Felden & Stéphane Pesant

Transcription

1 EURO-BASIN Cruise Data transfer to PANGAEA Janine Felden & Stéphane Pesant

2 1. EURO-BASIN cruise data 2. Data submission to PANGAEA 3. Editorial work at PANGAEA

3 Workflow for Cruise Data to PANGAEA What? Meta-Data (Latitude; Longitude; Gear etc.) DATA (experiments, measurements) When? Immediately after the expedition needed to georeference/ harmonize data After final evaluation BUT best before paper submission!!! Who? Chief Scientist Responsible Scientist (PI) How? PANGAEA Ticket System OR me

4 EURO-BASIN Cruises metadata (2012/2013) Cruise / Responsible Scientist 2013 FS Maria Merian 'Trans-Atlantic / Linda Holste RV Celtic Explorer 'Trans-Atlantic Acoustic Survey / Georg Rose RV James Cook 'Porcupine Abyssal Plain 2013 / Richard Lampitt G.O. Sars Trans-Atlantic / Geir Huse, W. Melle CCGS Hudson (Labrador Monitoring Transect) / Eric Head RV B. Saemundsson / A. Gislason Meta-Data in PANGAEA yes no no no/yes no no 2012 FS METEOR 'Deep Convection' / Linda Holste RV Celtic Explorer, Trans-Atlantic Acoustic Survey / George Rose RV B. Saemundsson / A. Gislason G.O. Sars 'Svinoy Section / Geier Huse yes no no no

5 Which Event-metadata are requested? Cruise (ship, start, end, chief scientist) Latitude (start/end) Longitude (start/end) Date, Time (start/end) Gear & additional metadata Nets (type, mesh size, minimum/maximum water depths, volume filtered...) CTD & water samples (filtered volume...) Ship station list and cruise report usually contains most of the relevant metadata

6 Data submission via Online ticket system (JIRA Client):

7 Online ticket system (JIRA Client): Data submission via

8 Online ticket system (JIRA Client): Data submission via

9 Ticket system workflow Author submit data (open issue) Data librarian assigns curator are informed Curator preparation of data set communication via ticket system (mail) Author Data are uploaded Data are published Data set is citable via DOI ( 4/PANGAEA.xxx) & can be linked to publisher (e.g. Elsevier) webpage

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11 Data Publication

12 Editorial work of WP1: Harmonization of cruise data harmonization of metadata and data (geographical positions, gear details etc., labeling) data set structuring to enhance future comparability CTD with water sampler CDT - data water sample nutrient plankton abundance experiments All have the same meta data and linked via the same Eventlabel

13 Editorial work of WP1: Data set review Metaheader of dataset (open access): Citation: Title & Authors Reference: Link to publication Abstract: Short description of sampling/experimental set up/method related to the data set (often not identical to paper abstract!) Events: Metadata of sampling event Parameter table: Overview of parameter measured, method used, PIs, other parameter specific details Data matrix can be password protected on request!!!

14 Editorial work of WP1: Data set review

15 Data set in PANGAEA Almeda, R; Alcaraz, M; Calbet, A et al. (2011): Metabolic rates and carbon budget of early developmental stages of the marine cyclopoid copepod Oithona davisae. Limnology and Oceanography Auel, H; Werner, I (2003): Feeding, respiration and life history of the hyperiid amphipod Themisto libellula in the Arctic marginal ice zone of the Greenland Sea. Journal of Experimental Marine Biology and Ecology Belail, R; Leaute, J-P; Mahe, J-C et al. (2013): Survey bottom trawl data of Micromesistius poutassou (blue whiting) in Bay of Biscay and Celtic Sea from the EVHOE time series ( ) Bode, A (2013): Biomasses and stable isotopes (carbon, nitrogen) in various plankton size fractions from the upper 200 m of the water column along a zonal transect at approximatly 24 N Bode, A; Alvarez-Ossorio, MT; Miranda, A et al. (2013): Zooplankton abundance for two shelf stations off Galicia (NW Spain) from 1994 to 2006 Buskey, EJ; Coulter, CJ; Brown, SL (1994): Feeding, growth and bioluminescence of the heterotrophic dinoflagellate Protoperidinium huberi. Marine Biology Buskey, EJ; Hyatt, CJ (1995): Effects of the Texas (USA) 'brown tide' alga on planktonic grazer. Marine Ecology Progress Series De La Rocha, CL (2013): Mesocosm Experiment in the Bay of Hopavagen, Norway, August 2012 Doray, M; Massé, J; Bellois, P et al. (2013): Micromesistius poutassou (blue whiting) abundance and biomass data in Bay of Biscay estimated from acoustic surveys ( ) Hänselmann, K; Walter, B (2013): Microzooplankton grazing experiment during Maria S. Merian cruise MSM26 Harmer, RA; Lindeque, PK (2013): Effect of elevated temperature on egg production, grazing and mortatlity of Calanus finmarchicus in the North Atlantic Holste, L (2013): Zooplankton biomass data METEOR cruise M87/1 Huse, G (2013): Spatially explicit estimates of length and biomass of Clupea harengus (Norwegian spring spawning herring) from acoustic and trawl surveys in the North-East Atlantic in May 2012 Jónasdóttir, SH; Nielsen, TG (2013): Egg production, hatching, faecal pellet production of Calanus finmarchicus in the North Atlantic Möller, KO; Reichelt, T; Holste, L (2013): Physical oceanography during Maria S. Merian cruise MSM26 Möller, KO; Reichelt, T; Holste, L (2013): Physical oceanography during METEOR cruise M87/1 (Deep Convection Cruise)

16 Data set in PANGAEA Nielsen, KE (2013): In situ egg and fecal pellet volume measurements Nielsen, KE (2013): In situ experiment Calanus finmarchicus egg production and grazing rates using fecal pellet production as proxy Nielsen, KE (2013): In situ experiment on Calanus finmarchicus egg production and grazing rates using fecal pellet production as proxy. North Atlantic spring 2013 Pinnegar, JKP; Trenkel, V; Melle, W et al. (2013): Stomach content records for pelagic fish (herring, mackerel, blue whiting, albacore and bluefin tuna) in the northeast Atlantic Sailley, S; Buitenhuis, ET (2013): Data compilation of dinoflagellate grazing and gross gowth efficiency rates from field and labratory experiments Swalethorp, R; Kjellerup, S; Nielsen, TG (2013): Mesozooplankton biomass data from the Kapisigdlit an inner fjord branch of the Godthaabsfjord system, West Greenland, 2010 Swalethorp, R; Kjellerup, S; Nielsen, TG (2013): Mesozooplankton size data from the fjord branch Kapisigdlit located in the Godthaabsfjord system, West Greenland, 2010 Swalethorp, R; Kjellerup, S; Nielsen, TG (2013): Mesozooplankton abundance data from the fjord branch Kapisigdlit located in the Godthaabsfjord system, West Greenland, 2010 Swalethorp, R; Kjellerup, S; Nielsen, TG (2013): Mesozooplankton abundance data from Disko Bay, West Greenland, 2008 Swalethorp, R; Kjellerup, S; Nielsen, TG (2013): Mesozooplankton biomass data from Disko Bay, West Greenland, 2008 Swalethorp, R; Kjellerup, S; Nielsen, TG (2013): Mesozooplankton size data from Disko Bay, West Greenland, 2008 Torres-Valdes, S; Painter, S; Martin, A et al. (2013): Compilation of downward flux observations from sediment trap deployments in the Atlantic Ocean - Contribution to EURO-BASIN's Data integration

17 Sum up Cruise metadata should be immediately submitted to PANGAEA All EURO-BASIN validated data should be submitted to PANGAEA! PANGAEA data quantity & quality depends on the data that are provided by the scientist! Thus: support the work of EUROBASIN WP1! for any data work including worries and ideas contact us (Stéphane Pesant or me