Introduction to ACENET Accelerating Discovery with Computational Research May, 2015
|
|
- Cassandra Moore
- 8 years ago
- Views:
Transcription
1 Introduction to ACENET Accelerating Discovery with Computational Research May, 2015
2 What is ACENET?
3 What is ACENET? Shared regional resource for... high-performance computing (HPC) remote collaboration visualization Hardware, software, and personnel
4 Mandate We facilitate research, education and innovation in Atlantic Canada by providing Advanced Research Computing resources and expertise. Accelerate discovery in Atlantic Canada
5 Consortium
6 History Began in CFI funding $25 million Similar organizations developed in other regions. The four regions have come together with a national umbrella organization called Compute Canada. Compute Canada operates as a federated model; ACENET is Compute Canada s regional partner in Atlantic Canada. Compute Canada helps to: better allocate scarce funding dollars; provide researchers with seamless access to infrastructure and resources nationally; and enable the advanced computing community to have a single, strong voice in the national forum.
7 Computing Resources Available A wide array of High Performance Computing and storage systems Big Data and Data Analytics tools and environments Leading edge GPU computing systems Highspeed, secure file transfer with the Globus Portal Extensive software library GenAP computing platform to access and use genomic datasets Compute Canada s Cloud computing and environment Data storage and back-up systems that provide stability and security options over your desktop Desktop and mobile videoconferencing Collaboration rooms at all ACENET partner institutions to deliver and view large videoconferences. Immersive 3D Visualization Data Cave at Saint Mary s University
8 ACENET Expertise Available Determining computing resources needed Designing, optimizing and troubleshooting computer code Customizing tools In-depth collaboration where needed Group and individual training from novice to advanced Accessible and responsive support staff Installing, managing and maintaining advanced research computing equipment Access to Digital Humanities expertise Access to 3D Visualization expertise
9 ? What is Advanced Research Computing
10 High Performance Computing (HPC) Supercomputing Computationally Intensive Data Mining BIG DATA Cloud Parallel Computing High Performance Data Analysis (HPDA) Data Intensive Simulation & Analysis Data Intensive
11 Answer: Any computing that is too big for a desktop.
12 What is High Performance Computing Many CPUs working on one problem Many serial jobs running at once; or Many CPUs working in close coordination. Communication between CPUs is key! Advantages Faster results Larger problems or more detailed simulations Principal tool: Computer cluster
13 ACENET Computers Four clusters 7000 CPU cores 20 TB RAM 500 TB disk storage Plus tape Plus software Remember: Shared resources! Hundreds of users aggregated numbers
14 What is a Cluster? Internet Dynamic Resource Manager scheduler "Grid Engine" "head node" cl001 cl002 cl003 cl cl999 storage storage storage
15 How Do I Get an Account? Go to No, you don t have to pay any money. Just tell us once a year about the great research you re doing so the taxpayers can be convinced to continue funding this resource.
16 How Do I Get Connected? Logging in: ssh Secure Shell Moving Data Around: sftp Secure File Transfer Protocol Scp Secure Copy Both provided with Mac OS X or Linux ssh -X username@mahone.ace-net.ca sftp username@placentia.ace-net.ca Windows? apple Try MobaXterm or PuTTY and WinSCP. Just google for them
17 Command-Line Interface
18 Applications Molecular Gaussian Gromacs Q-Chem VASP NAMD Math&CS Sage GAP DiVinE... Astro Engineering ANSYS Fluent CFX OpenFOAM Earth &Ocean CDO NCO GMT... Bio AbySS Bowtie rapsearch2 MrBayes Migrate-n WebMO VMD StarLab IRAF PhyML PLINK Software requests to:
19 Software Development Languages Compiler Parallel Libraries Tools C/C++ Fortran Suites GCC APIs Open MPI LAPACK FFTW TotalView dbx, gdb Perl Intel OpenMP GSL Valgrind Python PGI... ACML make R netcdf cvs, svn Java... HDF Boost git Software requests to: support@ace-net.ca
20 Data Analysis R Rmpi Octave Matlab* *Distributed Computing Server Python Numpy SciPy Sage pympi pylab matplotlib Software requests to: support@ace-net.ca
21 Available Compilers At ACENET C, C++, and Fortran Portland Group (PGI) version 8 pgcc, pgcc, pgf77, pgf90, pgf95 GNU suite versions 3 and 4 gcc, g++, gcc4, g++4, gfortran, g77 Intel Compiler Suite XE 2011 icc, icpc, ifort SunStudio version 12 cc, CC, f77, f90, f95 See
22 Environment Modules $ module list Currently Loaded Modulefiles: 1) pgi/ ) totalview/ ) openmpi/pgi/1.2.9 $ gcc -version gcc (GCC) $ module avail gcc gcc/4.4.3(default) gcc/4.6.4 gcc/4.8.0 $ module load gcc $ gcc --version gcc (GCC) changed! $ module unload gcc
23 MPI OpenMPI is default implementation Use modules to vary the underlying compiler, e.g. $ module unload openmpi $ module load gcc openmpi/gcc See
24 Parallel Job Processing $ cat jobscript #$ -cwd #$ -j yes #$ -l h_rt=48:00:00 #$ -l h_vmem=2g #$ -pe ompi* 32 module purge module load gcc openmpi/gcc mpirun./application Notice that process count and host list is passed automatically from Grid Engine to Open MPI.
25 Where To Go For Help Online: gcc help man gcc ACEnet wiki support: Please supply as much info as possible
26 What Cluster Should I Use? It doesn't matter, ONE ACCOUNT IS GOOD EVERYWHERE Multiple serial jobs? Shared memory parallel? MPI? Terabytes of storage? Some software has only local license Fit in anywhere Fundy best; Glooscap good Mahone, Placentia best; Fundy good Probably Glooscap e.g. Matlab DCS & Gaussian only at Placentia See for availability, or contact your Computational Research Consultant
Using WestGrid. Patrick Mann, Manager, Technical Operations Jan.15, 2014
Using WestGrid Patrick Mann, Manager, Technical Operations Jan.15, 2014 Winter 2014 Seminar Series Date Speaker Topic 5 February Gino DiLabio Molecular Modelling Using HPC and Gaussian 26 February Jonathan
More informationIntroduction to Linux and Cluster Basics for the CCR General Computing Cluster
Introduction to Linux and Cluster Basics for the CCR General Computing Cluster Cynthia Cornelius Center for Computational Research University at Buffalo, SUNY 701 Ellicott St Buffalo, NY 14203 Phone: 716-881-8959
More informationAn Introduction to High Performance Computing in the Department
An Introduction to High Performance Computing in the Department Ashley Ford & Chris Jewell Department of Statistics University of Warwick October 30, 2012 1 Some Background 2 How is Buster used? 3 Software
More informationGetting Started with HPC
Getting Started with HPC An Introduction to the Minerva High Performance Computing Resource 17 Sep 2013 Outline of Topics Introduction HPC Accounts Logging onto the HPC Clusters Common Linux Commands Storage
More informationThe Top Six Advantages of CUDA-Ready Clusters. Ian Lumb Bright Evangelist
The Top Six Advantages of CUDA-Ready Clusters Ian Lumb Bright Evangelist GTC Express Webinar January 21, 2015 We scientists are time-constrained, said Dr. Yamanaka. Our priority is our research, not managing
More informationicer Bioinformatics Support Fall 2011
icer Bioinformatics Support Fall 2011 John B. Johnston HPC Programmer Institute for Cyber Enabled Research 2011 Michigan State University Board of Trustees. Institute for Cyber Enabled Research (icer)
More informationHPC Wales Skills Academy Course Catalogue 2015
HPC Wales Skills Academy Course Catalogue 2015 Overview The HPC Wales Skills Academy provides a variety of courses and workshops aimed at building skills in High Performance Computing (HPC). Our courses
More informationCNAG User s Guide. Barcelona Supercomputing Center Copyright c 2015 BSC-CNS December 18, 2015. 1 Introduction 2
CNAG User s Guide Barcelona Supercomputing Center Copyright c 2015 BSC-CNS December 18, 2015 Contents 1 Introduction 2 2 System Overview 2 3 Connecting to CNAG cluster 2 3.1 Transferring files...................................
More informationOverview of HPC systems and software available within
Overview of HPC systems and software available within Overview Available HPC Systems Ba Cy-Tera Available Visualization Facilities Software Environments HPC System at Bibliotheca Alexandrina SUN cluster
More informationPLGrid Infrastructure Solutions For Computational Chemistry
PLGrid Infrastructure Solutions For Computational Chemistry Mariola Czuchry, Klemens Noga, Mariusz Sterzel ACC Cyfronet AGH 2 nd Polish- Taiwanese Conference From Molecular Modeling to Nano- and Biotechnology,
More informationCluster@WU User s Manual
Cluster@WU User s Manual Stefan Theußl Martin Pacala September 29, 2014 1 Introduction and scope At the WU Wirtschaftsuniversität Wien the Research Institute for Computational Methods (Forschungsinstitut
More informationHigh Performance Computing
High Performance Computing at Stellenbosch University Gerhard Venter Outline 1 Background 2 Clusters 3 SU History 4 SU Cluster 5 Using the Cluster 6 Examples What is High Performance Computing? Wikipedia
More informationNEC HPC-Linux-Cluster
NEC HPC-Linux-Cluster Hardware configuration: 4 Front-end servers: each with SandyBridge-EP processors: 16 cores per node 128 GB memory 134 compute nodes: 112 nodes with SandyBridge-EP processors (16 cores
More informationlocuz.com HPC App Portal V2.0 DATASHEET
locuz.com HPC App Portal V2.0 DATASHEET Ganana HPC App Portal makes it easier for users to run HPC applications without programming and for administrators to better manage their clusters. The web-based
More informationWorking with HPC and HTC Apps. Abhinav Thota Research Technologies Indiana University
Working with HPC and HTC Apps Abhinav Thota Research Technologies Indiana University Outline What are HPC apps? Working with typical HPC apps Compilers - Optimizations and libraries Installation Modules
More informationStreamline Computing Linux Cluster User Training. ( Nottingham University)
1 Streamline Computing Linux Cluster User Training ( Nottingham University) 3 User Training Agenda System Overview System Access Description of Cluster Environment Code Development Job Schedulers Running
More informationA Crash course to (The) Bighouse
A Crash course to (The) Bighouse Brock Palen brockp@umich.edu SVTI Users meeting Sep 20th Outline 1 Resources Configuration Hardware 2 Architecture ccnuma Altix 4700 Brick 3 Software Packaged Software
More informationHigh Performance Computing Facility Specifications, Policies and Usage. Supercomputer Project. Bibliotheca Alexandrina
High Performance Computing Facility Specifications, Policies and Usage Supercomputer Project Bibliotheca Alexandrina Bibliotheca Alexandrina 1/16 Topics Specifications Overview Site Policies Intel Compilers
More informationIntroduction to Running Computations on the High Performance Clusters at the Center for Computational Research
! Introduction to Running Computations on the High Performance Clusters at the Center for Computational Research! Cynthia Cornelius! Center for Computational Research University at Buffalo, SUNY! cdc at
More information1 Bull, 2011 Bull Extreme Computing
1 Bull, 2011 Bull Extreme Computing Table of Contents HPC Overview. Cluster Overview. FLOPS. 2 Bull, 2011 Bull Extreme Computing HPC Overview Ares, Gerardo, HPC Team HPC concepts HPC: High Performance
More informationAdvanced Techniques with Newton. Gerald Ragghianti Advanced Newton workshop Sept. 22, 2011
Advanced Techniques with Newton Gerald Ragghianti Advanced Newton workshop Sept. 22, 2011 Workshop Goals Gain independence Executing your work Finding Information Fixing Problems Optimizing Effectiveness
More informationHigh Performance Computing Cluster Quick Reference User Guide
High Performance Computing Cluster Quick Reference User Guide Base Operating System: Redhat(TM) / Scientific Linux 5.5 with Alces HPC Software Stack Copyright 2011 Alces Software Ltd All Rights Reserved
More informationPart I Courses Syllabus
Part I Courses Syllabus This document provides detailed information about the basic courses of the MHPC first part activities. The list of courses is the following 1.1 Scientific Programming Environment
More informationBerkeley Research Computing. Town Hall Meeting Savio Overview
Berkeley Research Computing Town Hall Meeting Savio Overview SAVIO - The Need Has Been Stated Inception and design was based on a specific need articulated by Eliot Quataert and nine other faculty: Dear
More informationAn introduction to Fyrkat
Cluster Computing May 25, 2011 How to get an account https://fyrkat.grid.aau.dk/useraccount How to get help https://fyrkat.grid.aau.dk/wiki What is a Cluster Anyway It is NOT something that does any of
More informationThe CNMS Computer Cluster
The CNMS Computer Cluster This page describes the CNMS Computational Cluster, how to access it, and how to use it. Introduction (2014) The latest block of the CNMS Cluster (2010) Previous blocks of the
More informationLANL Computing Environment for PSAAP Partners
LANL Computing Environment for PSAAP Partners Robert Cunningham rtc@lanl.gov HPC Systems Group (HPC-3) July 2011 LANL Resources Available To Alliance Users Mapache is new, has a Lobo-like allocation Linux
More informationIntroduction to HPC Workshop. Center for e-research (eresearch@nesi.org.nz)
Center for e-research (eresearch@nesi.org.nz) Outline 1 About Us About CER and NeSI The CS Team Our Facilities 2 Key Concepts What is a Cluster Parallel Programming Shared Memory Distributed Memory 3 Using
More informationwu.cloud: Insights Gained from Operating a Private Cloud System
wu.cloud: Insights Gained from Operating a Private Cloud System Stefan Theußl, Institute for Statistics and Mathematics WU Wirtschaftsuniversität Wien March 23, 2011 1 / 14 Introduction In statistics we
More informationSGI HPC Systems Help Fuel Manufacturing Rebirth
SGI HPC Systems Help Fuel Manufacturing Rebirth Created by T A B L E O F C O N T E N T S 1.0 Introduction 1 2.0 Ongoing Challenges 1 3.0 Meeting the Challenge 2 4.0 SGI Solution Environment and CAE Applications
More informationThe Asterope compute cluster
The Asterope compute cluster ÅA has a small cluster named asterope.abo.fi with 8 compute nodes Each node has 2 Intel Xeon X5650 processors (6-core) with a total of 24 GB RAM 2 NVIDIA Tesla M2050 GPGPU
More informationHigh Performance Computing in Aachen
High Performance Computing in Aachen Samuel Sarholz sarholz@rz.rwth aachen.de Center for Computing and Communication RWTH Aachen University HPC unter Linux Sep 15, RWTH Aachen Agenda o Hardware o Development
More informationSURFsara HPC Cloud Workshop
SURFsara HPC Cloud Workshop www.cloud.sara.nl Tutorial 2014-06-11 UvA HPC and Big Data Course June 2014 Anatoli Danezi, Markus van Dijk cloud-support@surfsara.nl Agenda Introduction and Overview (current
More informationUOW High Performance Computing Cluster User s Guide
UOW High Performance Computing Cluster User s Guide Information Management & Technology Services University of Wollongong ( Last updated on March 31, 2015) Contents 1. Overview 6 1.1. Specification................................
More informationProgramming models for heterogeneous computing. Manuel Ujaldón Nvidia CUDA Fellow and A/Prof. Computer Architecture Department University of Malaga
Programming models for heterogeneous computing Manuel Ujaldón Nvidia CUDA Fellow and A/Prof. Computer Architecture Department University of Malaga Talk outline [30 slides] 1. Introduction [5 slides] 2.
More informationIBM Platform Computing Cloud Service Ready to use Platform LSF & Symphony clusters in the SoftLayer cloud
IBM Platform Computing Cloud Service Ready to use Platform LSF & Symphony clusters in the SoftLayer cloud February 25, 2014 1 Agenda v Mapping clients needs to cloud technologies v Addressing your pain
More informationEsqu Science Experiments For Computer Network
Vangelis Floros, GRNET S.A. 3 rd Open Source Software Conference March 22, 2008 NTUA, Athens Greece Introduction What is a Grid? What is escience? Large Scientific Grids The example of EGEE Building Grid
More informationThe Fastest Way to Parallel Programming for Multicore, Clusters, Supercomputers and the Cloud.
White Paper 021313-3 Page 1 : A Software Framework for Parallel Programming* The Fastest Way to Parallel Programming for Multicore, Clusters, Supercomputers and the Cloud. ABSTRACT Programming for Multicore,
More informationSURFsara HPC Cloud Workshop
SURFsara HPC Cloud Workshop doc.hpccloud.surfsara.nl UvA workshop 2016-01-25 UvA HPC Course Jan 2016 Anatoli Danezi, Markus van Dijk cloud-support@surfsara.nl Agenda Introduction and Overview (current
More informationUsing NeSI HPC Resources. NeSI Computational Science Team (support@nesi.org.nz)
NeSI Computational Science Team (support@nesi.org.nz) Outline 1 About Us About NeSI Our Facilities 2 Using the Cluster Suitable Work What to expect Parallel speedup Data Getting to the Login Node 3 Submitting
More informationOverview of HPC Resources at Vanderbilt
Overview of HPC Resources at Vanderbilt Will French Senior Application Developer and Research Computing Liaison Advanced Computing Center for Research and Education June 10, 2015 2 Computing Resources
More informationIntroduction to grid technologies, parallel and cloud computing. Alaa Osama Allam Saida Saad Mohamed Mohamed Ibrahim Gaber
Introduction to grid technologies, parallel and cloud computing Alaa Osama Allam Saida Saad Mohamed Mohamed Ibrahim Gaber OUTLINES Grid Computing Parallel programming technologies (MPI- Open MP-Cuda )
More informationRemote & Collaborative Visualization. Texas Advanced Compu1ng Center
Remote & Collaborative Visualization Texas Advanced Compu1ng Center So6ware Requirements SSH client VNC client Recommended: TigerVNC http://sourceforge.net/projects/tigervnc/files/ Web browser with Java
More informationManual for using Super Computing Resources
Manual for using Super Computing Resources Super Computing Research and Education Centre at Research Centre for Modeling and Simulation National University of Science and Technology H-12 Campus, Islamabad
More informationUDR: UDT + RSYNC. Open Source Fast File Transfer. Allison Heath University of Chicago
UDR: UDT + RSYNC Open Source Fast File Transfer Allison Heath University of Chicago Motivation for High Performance Protocols High-speed networks (10Gb/s, 40Gb/s, 100Gb/s,...) Large, distributed datasets
More information1 DCSC/AU: HUGE. DeIC Sekretariat 2013-03-12/RB. Bilag 1. DeIC (DCSC) Scientific Computing Installations
Bilag 1 2013-03-12/RB DeIC (DCSC) Scientific Computing Installations DeIC, previously DCSC, currently has a number of scientific computing installations, distributed at five regional operating centres.
More informationAssignment # 1 (Cloud Computing Security)
Assignment # 1 (Cloud Computing Security) Group Members: Abdullah Abid Zeeshan Qaiser M. Umar Hayat Table of Contents Windows Azure Introduction... 4 Windows Azure Services... 4 1. Compute... 4 a) Virtual
More informationAgenda. HPC Software Stack. HPC Post-Processing Visualization. Case Study National Scientific Center. European HPC Benchmark Center Montpellier PSSC
HPC Architecture End to End Alexandre Chauvin Agenda HPC Software Stack Visualization National Scientific Center 2 Agenda HPC Software Stack Alexandre Chauvin Typical HPC Software Stack Externes LAN Typical
More informationPROGRAMMING FOR BIOLOGISTS. BIOL 6297 Monday, Wednesday 10 am -12 pm
PROGRAMMING FOR BIOLOGISTS BIOL 6297 Monday, Wednesday 10 am -12 pm Tomorrow is Ada Lovelace Day Ada Lovelace was the first person to write a computer program Today s Lecture Overview of the course Philosophy
More informationCluster, Grid, Cloud Concepts
Cluster, Grid, Cloud Concepts Kalaiselvan.K Contents Section 1: Cluster Section 2: Grid Section 3: Cloud Cluster An Overview Need for a Cluster Cluster categorizations A computer cluster is a group of
More informationXSEDE Service Provider Software and Services Baseline. September 24, 2015 Version 1.2
XSEDE Service Provider Software and Services Baseline September 24, 2015 Version 1.2 i TABLE OF CONTENTS XSEDE Production Baseline: Service Provider Software and Services... i A. Document History... A-
More informationService Partition Specialized Linux nodes. Compute PE Login PE Network PE System PE I/O PE
2 Service Partition Specialized Linux nodes Compute PE Login PE Network PE System PE I/O PE Microkernel on Compute PEs, full featured Linux on Service PEs. Service PEs specialize by function Software Architecture
More informationMPI / ClusterTools Update and Plans
HPC Technical Training Seminar July 7, 2008 October 26, 2007 2 nd HLRS Parallel Tools Workshop Sun HPC ClusterTools 7+: A Binary Distribution of Open MPI MPI / ClusterTools Update and Plans Len Wisniewski
More informationData Analytics at NERSC. Joaquin Correa JoaquinCorrea@lbl.gov NERSC Data and Analytics Services
Data Analytics at NERSC Joaquin Correa JoaquinCorrea@lbl.gov NERSC Data and Analytics Services NERSC User Meeting August, 2015 Data analytics at NERSC Science Applications Climate, Cosmology, Kbase, Materials,
More informationPRIMERGY server-based High Performance Computing solutions
PRIMERGY server-based High Performance Computing solutions PreSales - May 2010 - HPC Revenue OS & Processor Type Increasing standardization with shift in HPC to x86 with 70% in 2008.. HPC revenue by operating
More informationBringing Big Data Modelling into the Hands of Domain Experts
Bringing Big Data Modelling into the Hands of Domain Experts David Willingham Senior Application Engineer MathWorks david.willingham@mathworks.com.au 2015 The MathWorks, Inc. 1 Data is the sword of the
More informationVisualization Cluster Getting Started
Visualization Cluster Getting Started Contents 1 Introduction to the Visualization Cluster... 1 2 Visualization Cluster hardware and software... 2 3 Remote visualization session through VNC... 2 4 Starting
More informationComputer Virtualization in Practice
Computer Virtualization in Practice [ life between virtual and physical ] A. Németh University of Applied Sciences, Oulu, Finland andras.nemeth@students.oamk.fi ABSTRACT This paper provides an overview
More informationPARALLEL & CLUSTER COMPUTING CS 6260 PROFESSOR: ELISE DE DONCKER BY: LINA HUSSEIN
1 PARALLEL & CLUSTER COMPUTING CS 6260 PROFESSOR: ELISE DE DONCKER BY: LINA HUSSEIN Introduction What is cluster computing? Classification of Cluster Computing Technologies: Beowulf cluster Construction
More informationHow to Run Parallel Jobs Efficiently
How to Run Parallel Jobs Efficiently Shao-Ching Huang High Performance Computing Group UCLA Institute for Digital Research and Education May 9, 2013 1 The big picture: running parallel jobs on Hoffman2
More informationHPCC USER S GUIDE. Version 1.2 July 2012. IITS (Research Support) Singapore Management University. IITS, Singapore Management University Page 1 of 35
HPCC USER S GUIDE Version 1.2 July 2012 IITS (Research Support) Singapore Management University IITS, Singapore Management University Page 1 of 35 Revision History Version 1.0 (27 June 2012): - Modified
More informationDeveloping a Computational Science IDE for HPC Systems
Developing a Computational Science IDE for HPC Systems David E. Hudak, Neil Ludban, Vijay Gadepally, Ashok Krishnamurthy Ohio Supercomputer Center {dhudak, nludban, vijayg, ashok}@osc.edu Abstract Software
More informationOLCF Best Practices. Bill Renaud OLCF User Assistance Group
OLCF Best Practices Bill Renaud OLCF User Assistance Group Overview This presentation covers some helpful information for users of OLCF Staying informed Some aspects of system usage that may differ from
More informationCloud Computing through Virtualization and HPC technologies
Cloud Computing through Virtualization and HPC technologies William Lu, Ph.D. 1 Agenda Cloud Computing & HPC A Case of HPC Implementation Application Performance in VM Summary 2 Cloud Computing & HPC HPC
More informationLinux clustering. Morris Law, IT Coordinator, Science Faculty, Hong Kong Baptist University
Linux clustering Morris Law, IT Coordinator, Science Faculty, Hong Kong Baptist University PII 4-node clusters started in 1999 PIII 16 node cluster purchased in 2001. Plan for grid For test base HKBU -
More informationCaltech Center for Advanced Computing Research System Guide: MRI2 Cluster (zwicky) January 2014
1. How to Get An Account CACR Accounts 2. How to Access the Machine Connect to the front end, zwicky.cacr.caltech.edu: ssh -l username zwicky.cacr.caltech.edu or ssh username@zwicky.cacr.caltech.edu Edits,
More informationHigh Performance. CAEA elearning Series. Jonathan G. Dudley, Ph.D. 06/09/2015. 2015 CAE Associates
High Performance Computing (HPC) CAEA elearning Series Jonathan G. Dudley, Ph.D. 06/09/2015 2015 CAE Associates Agenda Introduction HPC Background Why HPC SMP vs. DMP Licensing HPC Terminology Types of
More informationThe RWTH Compute Cluster Environment
The RWTH Compute Cluster Environment Tim Cramer 11.03.2013 Source: D. Both, Bull GmbH Rechen- und Kommunikationszentrum (RZ) How to login Frontends cluster.rz.rwth-aachen.de cluster-x.rz.rwth-aachen.de
More informationHow To Use Chronos Mount For Astronomical Use
Hypervisor is a Linux-based appliance like the Android OS and Apple ios. The architecture is open, and this is a huge advantage from the user s perspective. You can be a novice or an advanced user, and
More informationWindows HPC 2008 Cluster Launch
Windows HPC 2008 Cluster Launch Regionales Rechenzentrum Erlangen (RRZE) Johannes Habich hpc@rrze.uni-erlangen.de Launch overview Small presentation and basic introduction Questions and answers Hands-On
More informationParallel Processing using the LOTUS cluster
Parallel Processing using the LOTUS cluster Alison Pamment / Cristina del Cano Novales JASMIN/CEMS Workshop February 2015 Overview Parallelising data analysis LOTUS HPC Cluster Job submission on LOTUS
More informationIntroduction to Supercomputing with Janus
Introduction to Supercomputing with Janus Shelley Knuth shelley.knuth@colorado.edu Peter Ruprecht peter.ruprecht@colorado.edu www.rc.colorado.edu Outline Who is CU Research Computing? What is a supercomputer?
More informationTutorial: Using WestGrid. Drew Leske Compute Canada/WestGrid Site Lead University of Victoria
Tutorial: Using WestGrid Drew Leske Compute Canada/WestGrid Site Lead University of Victoria Fall 2013 Seminar Series Date Speaker Topic 23 September Lindsay Sill Introduction to WestGrid 9 October Drew
More informationSLURM: Resource Management and Job Scheduling Software. Advanced Computing Center for Research and Education www.accre.vanderbilt.
SLURM: Resource Management and Job Scheduling Software Advanced Computing Center for Research and Education www.accre.vanderbilt.edu Simple Linux Utility for Resource Management But it s also a job scheduler!
More informationUnlocking the True Value of Hadoop with Open Data Science
Unlocking the True Value of Hadoop with Open Data Science Kristopher Overholt Solution Architect Big Data Tech 2016 MinneAnalytics June 7, 2016 Overview Overview of Open Data Science Python and the Big
More informationManaging, Sharing and Moving Big Data Tracy Teal and Greg Mason Insttute for Cyber Enabled Research
Managing, Sharing and Moving Big Data Tracy Teal and Greg Mason Insttute for Cyber Enabled Research Data storage optons Storing and accessing data on the HPCC Transferring data to and from the HPCC Sharing
More informationCloud Computing for Research. Jeff Barr - January 2011
Cloud Computing for Research Jeff Barr - January 2011 The Cloud is Suddenly Everywhere Current Research Challenges There is never enough: Time Money CPU power Storage Physical space Power or cooling How
More informationHPC and Big Data. EPCC The University of Edinburgh. Adrian Jackson Technical Architect a.jackson@epcc.ed.ac.uk
HPC and Big Data EPCC The University of Edinburgh Adrian Jackson Technical Architect a.jackson@epcc.ed.ac.uk EPCC Facilities Technology Transfer European Projects HPC Research Visitor Programmes Training
More informationParallel Debugging with DDT
Parallel Debugging with DDT Nate Woody 3/10/2009 www.cac.cornell.edu 1 Debugging Debugging is a methodical process of finding and reducing the number of bugs, or defects, in a computer program or a piece
More informationScientific Programming, Analysis, and Visualization with Python. Mteor 227 Fall 2015
Scientific Programming, Analysis, and Visualization with Python Mteor 227 Fall 2015 Python The Big Picture Interpreted General purpose, high-level Dynamically type Multi-paradigm Object-oriented Functional
More informationThe Mantid Project. The challenges of delivering flexible HPC for novice end users. Nicholas Draper SOS18
The Mantid Project The challenges of delivering flexible HPC for novice end users Nicholas Draper SOS18 What Is Mantid A framework that supports high-performance computing and visualisation of scientific
More informationCAS2K5. Jim Tuccillo jtuccillo@lnxi.com 912.576.5215
CAS2K5 Jim Tuccillo jtuccillo@lnxi.com 912.576.5215 Agenda icorporate Overview isystem Architecture inode Design iprocessor Options iinterconnect Options ihigh Performance File Systems Lustre isystem Management
More informationC2110 UNIX and programming
C2110 UNIX and programming 3 rd Lesson Petr Kulhánek, Jakub Štěpán kulhanek@chemi.muni.cz National Centre for Biomolecular Research, Faculty of Science Masaryk University, Kotlářská 2, CZ-61137 Brno CZ.1.07/2.2.00/15.0233
More informationCopyright 2011 Penguin Computing, Inc. All rights reserved. Interactive Preclinical Analytics via GPU Cloud Platform
Copyright 2011 Penguin Computing, Inc. All rights reserved Interactive Preclinical Analytics via GPU Cloud Platform Numira and Penguin Partnership Penguin POD Innovative HPC as a Service platform > Strong
More informationGPU System Architecture. Alan Gray EPCC The University of Edinburgh
GPU System Architecture EPCC The University of Edinburgh Outline Why do we want/need accelerators such as GPUs? GPU-CPU comparison Architectural reasons for GPU performance advantages GPU accelerated systems
More informationEven in the coolest of economies, spending and
High-Performance Computing Even in the coolest of economies, spending and investment can be justified and supported for productivity driving business solutions. So it goes for high-performance computing
More informationDebugging in Heterogeneous Environments with TotalView. ECMWF HPC Workshop 30 th October 2014
Debugging in Heterogeneous Environments with TotalView ECMWF HPC Workshop 30 th October 2014 Agenda Introduction Challenges TotalView overview Advanced features Current work and future plans 2014 Rogue
More informationCorporate Information & Computing Services. Research Support For Postgraduate Students.
Corporate Information & Computing Services. Research Support For Postgraduate Students. CiCS Support for Research Corporate Information and Computing Services (CiCS) provides a diverse range of computing
More informationINTEL PARALLEL STUDIO XE EVALUATION GUIDE
Introduction This guide will illustrate how you use Intel Parallel Studio XE to find the hotspots (areas that are taking a lot of time) in your application and then recompiling those parts to improve overall
More informationBig Data and Cloud Computing for GHRSST
Big Data and Cloud Computing for GHRSST Jean-Francois Piollé (jfpiolle@ifremer.fr) Frédéric Paul, Olivier Archer CERSAT / Institut Français de Recherche pour l Exploitation de la Mer Facing data deluge
More informationMicrosoft Hyper-V chose a Primary Server Virtualization Platform
Roger Shupert, Integration Specialist } Lake Michigan College has been using Microsoft Hyper-V as it s primary server virtualization platform since 2008, in this presentation we will discuss the following;
More informationCHESS DAQ* Introduction
CHESS DAQ* Introduction Werner Sun (for the CLASSE IT group), Cornell University * DAQ = data acquisition https://en.wikipedia.org/wiki/data_acquisition Big Data @ CHESS Historically, low data volumes:
More informationData Mining with Hadoop at TACC
Data Mining with Hadoop at TACC Weijia Xu Data Mining & Statistics Data Mining & Statistics Group Main activities Research and Development Developing new data mining and analysis solutions for practical
More informationHigh Performance Computing in CST STUDIO SUITE
High Performance Computing in CST STUDIO SUITE Felix Wolfheimer GPU Computing Performance Speedup 18 16 14 12 10 8 6 4 2 0 Promo offer for EUC participants: 25% discount for K40 cards Speedup of Solver
More informationParallel Computing with MATLAB
Parallel Computing with MATLAB Scott Benway Senior Account Manager Jiro Doke, Ph.D. Senior Application Engineer 2013 The MathWorks, Inc. 1 Acceleration Strategies Applied in MATLAB Approach Options Best
More informationAutomating Big Data Benchmarking for Different Architectures with ALOJA
www.bsc.es Jan 2016 Automating Big Data Benchmarking for Different Architectures with ALOJA Nicolas Poggi, Postdoc Researcher Agenda 1. Intro on Hadoop performance 1. Current scenario and problematic 2.
More informationSourcery Overview & Virtual Machine Installation
Sourcery Overview & Virtual Machine Installation Damian Rouson, Ph.D., P.E. Sourcery, Inc. www.sourceryinstitute.org Sourcery, Inc. About Us Sourcery, Inc., is a software consultancy founded by and for
More information:Introducing Star-P. The Open Platform for Parallel Application Development. Yoel Jacobsen E&M Computing LTD yoel@emet.co.il
:Introducing Star-P The Open Platform for Parallel Application Development Yoel Jacobsen E&M Computing LTD yoel@emet.co.il The case for VHLLs Functional / applicative / very high-level languages allow
More information