OpenHPC Introduction. Adrian Reber CentOS Dojo CERN 2018 October 19
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1 OpenHPC Introduction Adrian Reber CentOS Dojo CERN 2018 October 19
2 2 CENTOS DOJO CERN 2018 What is OpenHPC?
3 3 CENTOS DOJO CERN 2018 Software Repository
4 4 CENTOS DOJO CERN 2018 yum and zypper
5 5 CENTOS DOJO CERN 2018 CentOS 7 and SLES 12
6 6 CENTOS DOJO CERN 2018 x86_64 and aarch64
7 7 CENTOS DOJO CERN 2018 Why OpenHPC?
8 8 CENTOS DOJO CERN 2018 Multiple Compilers
9 9 CENTOS DOJO CERN 2018 Multiple MPIs
10 10 CENTOS DOJO CERN 2018 Three compilers Two versions each Already six permutations
11 Six compiler permutations Three MPIs Two versions each Already 36 permutations 11 CENTOS DOJO CERN 2018
12 12 CENTOS DOJO CERN 2018 Common setup for many HPC sites
13 13 CENTOS DOJO CERN 2018 What is OpenHPC?
14 14 CENTOS DOJO CERN 2018 Community effort to reduce duplication
15 OpenHPC: Mission and Vision Vision: OpenHPC components and best practices will enable and accelerate innovation and discoveries by broadening access to state-of-the-art, open-source HPC methods and tools in a consistent environment, supported by a collaborative, worldwide community of HPC users, developers, researchers, administrators, and vendors. 15 CENTOS DOJO CERN 2018
16 OpenHPC: Mission and Vision Mission: to provide a reference collection of open-source HPC software components and best practices, lowering barriers to deployment, advancement, and use of modern HPC methods and tools. 16 CENTOS DOJO CERN 2018
17 OpenHPC: Current Project Members 17 CENTOS DOJO CERN 2018
18 OpenHPC: Current TSC Members Reese Baird, Intel (Maintainer) Brayford, LRZ (Maintainer) Coulter, Indiana University (End-User/Site Representative) Chris Downing, Red Oak Consulting (Maintainer) Craig Gardner, SUSE (Maintainer) Renato Golin, Linaro (Testing Coordinator) Michael Karo, Altair (Maintainer) Janet Lebens, Cray (Maintainer) Thomas Moschny, ParTec (Maintainer) Takayuki Okamoto, Fujitsu (Maintainer) Kevin Pedretti, Sandia National Laboratory (Maintainer) Paul Peltz, Los Alamos National Laboratory (Maintainer) Nam Pho, Harvard Medical School (Maintainer) Cyrus Proctor, Texas Advanced Computing Center (Maintainer) Adrian Reber, Red Hat (Maintainer) Karl W. Schulz, UT Austin (Project Lead, Testing Coordinator) Jeff Schutkoske, Cray (Component Development Representative) Derek Simmel, Pittsburgh Supercomputing Center (End-User/Site Representative) Chris Simmons, UT Dallas (Maintainer) Nirmala Sundararajan, Dell (Maintainer) 18 CENTOS DOJO CERN 2018
19
20 Building Blocks: Pick and Choose 20 CENTOS DOJO CERN 2018
21 OpenHPC: Project History 21 CENTOS DOJO CERN 2018
22 OpenHPC: Number of Components # of Componets Included v1.2 v1.3 v1.1 v1.2.1 v1.1.1 v1.0 v1.0.1 v1.3.1 v1.3.3 v1.3.2 v1.3.4 v Jul-15 Jan-16 Aug-16 Mar-17 Sep-17 Apr-18 Oct CENTOS DOJO CERN 2018
23 OpenHPC: Components Changed 60% % Componets Updated 50% 40% 30% 20% 10% 0% 51.6% 40.9% 41.6% 43.8% 33.9% 31.9% 25.8% 26.7% 8.1% 4.5% 1.8% v1.0.1 v1.1 v1.1.1 v1.2 v1.2.1 v1.3 v1.3.1 v1.3.2 v1.3.3 v1.3.4 v CENTOS DOJO CERN 2018
24 24 CENTOS DOJO CERN 2018 What is OpenHPC?
25 25 CENTOS DOJO CERN 2018 Software Repository
26 26 CENTOS DOJO CERN 2018 Including: Lmod
27 27 CENTOS DOJO CERN 2018 Including: Provisioning: Warewulf
28 28 CENTOS DOJO CERN 2018 Including: Provisioning: xcat
29 29 CENTOS DOJO CERN 2018 Including: Monitoring: Nagios
30 30 CENTOS DOJO CERN 2018 Including: Monitoring: Ganglia
31 Including: Resource Manager: PBS Pro 31 CENTOS DOJO CERN 2018
32 32 CENTOS DOJO CERN 2018 Including: Resource Manager: Slurm
33 33 CENTOS DOJO CERN 2018 Including: Compiler: GCC
34 34 CENTOS DOJO CERN 2018 Including: Compiler: LLVM
35 35 CENTOS DOJO CERN 2018 Including: Compiler: Intel
36 36 CENTOS DOJO CERN 2018 Including: Compiler: ARM
37 37 CENTOS DOJO CERN 2018 Including: MPI: Open MPI
38 38 CENTOS DOJO CERN 2018 Including: MPI: MVAPICH2
39 39 CENTOS DOJO CERN 2018 Including: MPI: MPICH
40 40 CENTOS DOJO CERN 2018 Including: MPI: Intel
41 41 CENTOS DOJO CERN 2018 Including: EasyBuild
42 42 CENTOS DOJO CERN 2018 Including: Spack
43 43 CENTOS DOJO CERN 2018 Including: Charliecloud
44 44 CENTOS DOJO CERN 2018 Including: Singularity
45 45 CENTOS DOJO CERN 2018 Including: Lustre Client
46 46 CENTOS DOJO CERN 2018 Including: BeeGFS Client
47 47 CENTOS DOJO CERN 2018 Including: Lot s of different libraries
48 48 CENTOS DOJO CERN 2018 But not just a Software Repository
49 49 CENTOS DOJO CERN 2018 Excellent Documentation Including Recipes
50 50 CENTOS DOJO CERN 2018 Each Release is completely tested
51 OpenHPC: Same Interface Everywhere 51 CENTOS DOJO CERN 2018
52 52 CENTOS DOJO CERN 2018 Some Technical Details
53 53 CENTOS DOJO CERN 2018 Based on RPM
54 Tries to avoid Conflicts # repoquery --whatprovides "libopenblas.so.0()(64bit) openblas-0: el7.x86_64 openblas-gnu7-ohpc-0: ohpc.x86_64 # repoquery --whatprovides "libltdl.so.7()(64bit)" libtool-ltdl-0: el7_3.x86_64 libtool-ohpc-0: x86_64 54 CENTOS DOJO CERN 2018
55 RPM Coloring OpenHPC RPMs add (ohpc) color string to shared objects (.so) for Provides: and Requires: : # cat /usr/lib/rpm/fileattrs/ohpc.attr % ohpc_provides /usr/lib/rpm/ohpc-find-provides % ohpc_requires /usr/lib/rpm/ohpc-find-requires %{buildroot} /opt/ohpc % ohpc_path ^/opt/ohpc % elf_exclude_path ^/opt/ohpc % ohpc_magic ^ELF (32 64)-bit.*$ % ohpc_flags magic_and_path 55 CENTOS DOJO CERN 2018
56 RPM Coloring # rpm -q --requires gnu7-compilers-ohpc egrep libc.so libgc Without coloring libgcc_s.so.1()(64bit) libgcc_s.so.1(gcc_3.0)(64bit) libgcc_s.so.1(gcc_3.3)(64bit) libgcc_s.so.1(gcc_4.2.0)(64bit) libc.so.6()(64bit) libc.so.6(glibc_2.10)(64bit) libc.so.6(glibc_2.11)(64bit) libc.so.6(glibc_2.14)(64bit) With coloring libgcc_s.so.1()(64bit)(ohpc) libgcc_s.so.1(gcc_3.0)(64bit)(ohpc) libgcc_s.so.1(gcc_3.3)(64bit)(ohpc) libgcc_s.so.1(gcc_4.2.0)(64bit)(ohpc) libc.so.6()(64bit) libc.so.6(glibc_2.10)(64bit) libc.so.6(glibc_2.11)(64bit) libc.so.6(glibc_2.14)(64bit) 56 CENTOS DOJO CERN 2018
57 OpenHPC Home: Primary GitHub Site: Buildsystem: Package Repositories: Component Submission: System Registry: CI Infrastructure: OpenHPC Wiki: Mailing Lists: System Registration Form CENTOS DOJO CERN 2018
58 THANK YOU
59
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