EDIT Workpackage 5 Unified Model Software and Activities
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1 Software Categories Main Activities in revisionary process 1 - Bibliographic 2 - Geographical 3 - Taxonomic 4 - Descriptive 5 - Communication 6 - Publication Collecting Gather existing specimens Examine specimens Prepare Paper Curation Activities 7 - Image processing 8 - Fieldwork 9 - Phylogenetic 10 - Specimen access 11 - Nomenclature
2 Clear links between Software categories and Main Activities Collecting Gather existing specimens Examine specimens Prepare Paper Curation Activities Geographical, Fieldwork (Internet search engines) Specimen access, (Internet search engines) Descriptive, Publication, Image processing, Phylogenetic, Specimen access Bibliographic, Geographical, Publication, Image Processing, Specimen access Specimen access, Nomenclature
3 List of all tools used : Software Use Main Software Main Activities category Adobe Illustrator Assembling plates 6, 7 Prepare paper Adobe Photoshop Preparing illustrations and photographs 6, 7 Prepare paper, Curation (for online db) Arc Explorer Distribution maps 2, 6 Prepare paper Arc View Distribution maps 2, 6 Prepare paper BG-BASE Database 10 BIOTA SQL database used to store images and data. Links images to species, specimen, collection etc. Allows collaborative work over the internet. Can function as a specimen management tool. 10, 5 Examination and CANOCO Statistical 7 Examination and Coral Draw Preparing illustrations and photographs 6, 7 Prepare paper DELTA Descriptive Language for Taxonomy. Produces computer generated descriptions and keys. 4 Examination and DIVA Distribution maps 2, 6 Prepare paper EndNote Bibliographies and references 1 Prepare paper ESRI ArcView GIS 3.2 Maps 2, 6 Prepare paper Excel Storing various data 6, 10 Examination and Curation activies FileMaker DB Label Printing 11 Curation Filemaker Pro Maps 2, 6 Prepare paper Google earth Distribution maps 2, 6 Prepare paper Henning86 Phylogenetic 9 Examination and
4 Illustrator Mounting plates; Making line illustrations 2, 6 Prepare paper Image Database Storing images 2, 6 Image Pro Plus 2, 6 IMATCH Image management tool. Stores digital images with metadata, allows 7 Prepare paper searching on keyword. Provides basic image manipulation such as contrast adjustment. intkey Reading interactive keys 9 Examination and LUCID Compiles interactive keys 9 Examination and Maclade Stores character measurements and produces nexus file of data 9 Examination and MESQUITE Stores character feature in a data matrix. Provides phylogenetic and multivariate. Uses a range of methods such as parsimony, maximum likelihood etc 9 Examination and MS Access Collection and specimen management, label printing 10 Prepare paper, Curation MS Excel Comparison tables, graphs, personal database Used in most Used in most MS Word Preparing and compiling the final paper and other word processing Used in most Used in most PADME In house collection database (MS Access) 10 Curation Paint Shop Pro Preparation and manipulation of images 7 Examination and Paradox DB Database for storing information on species, specimens, locations and literature. 10 Curation PAST Statistical 9 Examination and Paup Performs the actual PG 9 Examination and PAUP Phylogenetic 9 Examination and Powerpoint Presentations 5
5 SPOT Preparation and manipulation of images 7 Prepare paper SPSS Statistical application 9 Examination and Syntax 2000 Statistical 9 Examination and WinClada Setting up cladogram 9 Examination and
6 Some commonly used Websites: Google GEO-REF The Zoological Record Google Scholar ISI Web of Knowledge Index Herbarium Index to Organism Names (ION) ZooTaxa, and general background information, and general background information, general background, general background Some specialist websites : Fishbase World Wide Catalogue of Spiders BioSystematik Database of World Diptera Index Fungorum Sylloge Fungarum IPNI
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