Natural Language Processing Formal Semantics Knowledge Representation Healthcare Informatics Ontologies Machine Learning
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1 Camilo Thorne Research Interests Postdoctoral Researcher IBM Language and Knowledge Center for Advanced Studies, Trento Rise Piazza Manci 17, Povo di Trento 38123, Italy linkedin website (+39) : mobile ACM and SIGSEM member, Peruvian citizen Natural Language Processing Formal Semantics Knowledge Representation Healthcare Informatics Ontologies Machine Learning Education Dec 05 Mar 10 Oct 01 Sep 04 Oct 00 Jun 01 Mar 92 Jun 97 PhD ( Dottorato di Ricerca ) in Computer Science. Free University of Bozen-Bolzano. Bolzano, Italy. Focus: Formal (Montague) semantics, controlled natural languages, knowledge representation, ontologies and computational logic. Language: English. PhD dissertation: Query Answering over Ontologies Using Controlled Natural Language. Supervisors: Prof. Diego Calvanese and Prof. Rafaella Bernardi. Reviewers: Prof. Ian Pratt Hartmann and Prof. Carlos Areces. MSc ( Maîtrise, DEA ) in Computer Science. Université de Paris 1 Panthé on-sorbonne, Université de Paris 13 Villetaneuse. Paris and Villetanuese, France. Focus: logic (first order model and proof theory, set theory), knowledge representation, optimization, text processing (POS tagging, IE and clustering), Java, Prolog, Lisp programming. Language: French. MSc thesis: Apprentissage de grammaires catégorielles de modules. Supervisor: Prof. Denis Béchet. BSc ( Licence ) in Logic. Université de Paris 1 Panthéon-Sorbonne. Paris, France. Focus: logic, discrete mathematics, theory of computation. Language: French. BA ( Licenciatura ) in Humanities. Pontificia Universidad Católica del Perú. Lima, Peru. Focus: Linguistics, philosophy. Language: Spanish. Jan 89 Dec 91 Research Experience International Baccalaureate. Newton College. Lima, Peru. Language: English and Spanish. Jun 14 pres Postdoctoral Researcher. IBM Language and Knowledge Center for Advanced Studies, Povo di Trento, Italy. I am currently working in a joint project of IBM and the University of Trento related to domain-specific interactive question-answering systems.
2 Jan 06 Jan 14 Jul 05 Sep 05 Mar 05 May 05 Pre-/Postdoctoral Researcher. 8 years. KRDB Research Centre for Knowledge and Data, Free University of Bozen-Bolzano. Bolzano, Italy. Defined and studied the data complexity of families of controlled natural languages in one-to-one relationship with semantic web (OWL) ontologies and formal query languages (SQL, SQL with aggregations) for ontology-based data access. The distribution of such natural language fragments in corpora was also studied. Work partially funded by the projects European FP6-FP7 NET 2 - Foundations of Networked Knowledge and TONES - Thinking Ontologies projects. More recently, studied IE and entity recognition techniques to automatically extract process fragments from clinical guidelines in the internal VeriCliG - Extraction and Verification of Clinical Guidelines project. A Java-based experimental framework based on WordNet, the Weka data mining framework, the Stanford NLP API and the UMLS Metathesaurus (the main clinical lexical resource) API was developed Intern. 3 months. Knowledge Media Institute (KMi), Open University. Milton Keynes, UK. Extended the KMi CORDER (COmmunity Relation Discovery by named Entity Recognition) algorithm, to extract domain ontologies using unsupervised machine learning (hierarchical clustering). A Java (SDK 1.5, Collections and JDBC APIs) prototype was developed. Intern. 3 months. CNR (Consiglio Nazionale della Ricerca), Laboratory of Applied Ontology (LOA), University of Trento. Trento, Italy. Studied ontologies about BDI agents. Apr 04 Sep 04 Teaching Experience Intern. 6 months. CNRS (Centre National de la Recherche Scientifique), Laboratoire d Informatique de Paris Nord (LIPN). Villetaneuse, France. Defined the class of categorial module grammars and studied their learnability (in Gold s model). A small LISP parser was developed. Materials Feb 14 Jun 14 Aug 13 To inspect course materials please browse: Teaching Assistant: Data Structures and Algorithms. 6 months. Faculty of Computer Science, Free University of Bozen-Bolzano. Bolzano, Italy. Taught the labs of the 2014 BSc (core) course in data strutures and algorithms. Lecturer: Formal Semantics. 1 week ESSLLI Summer School. Düsseldorf, Germany. Taught a course on aggregation in English, viz., on how SQL-like aggregate functions occur in English, how they fit within generalized quantifier theory, how they
3 can be computed, their computational properties, and their distribution vis-à-vis other generalized quantifiers. Mar 11 Jun 12 Feb 00 Jul 00 Projects Feb 12 Jan 14 Jun 10 May 13 Jan 06 Aug 08 Jul 05 Sep 05 Publications Papers Teaching Assistant: Computational Logic. 6+6 months. Faculty of Computer Science, Free University of Bozen-Bolzano. Bolzano, Italy. Taught the lab of the European MSc course in computational logic, introducing the students to propositional, first-order and description logic modelling and solving tools (e.g., Minisat, SPASS, Pellet). Lecturer: Introductory Logic. 6 months. Faculty of Engineering, Universidad Privada Ricardo Palma. Lima, Peru. Taught a first-year BSc introductory course in logic (propositional and first-order). VeriCliG - Extraction and Verification of Clinical Guidelines (FUB Foundation). KRDB Reasearch Centre for Knowledge and Data, Bolzano, Italy. NET 2 : A Network for Enabling Networked Knowledge (FP ). KRDB Reasearch Centre for Knowledge and Data, Bolzano, Italy. TONES: Thinking Ontologies (FP6-7603) KRDB Reasearch Centre for Knowledge and Data, Bolzano, Italy. CORDER (KMi internal). KMi, Milton Keynes, UK. To download the papers please browse: Camilo Thorne, Raffaella Bernardi, Diego Calvanese. Designing Efficient Controlled Languages for Ontologies. 2014, in: Computing Meaning, Vol. 4. Book chapter Camilo Thorne, Elena Cardillo, Claudio Eccher, Marco Montali, Diego Calvanese. Process Fragment Recognition in Clinical Documents. 2013, in: Proceedings of the 2013 AI*IA Conference (Turin, Italy). Conference paper. Camilo Thorne, Elena Cardillo, Claudio Eccher, Marco Montali, Diego Calvanese. Clinical Activity Recognition in Clinical Documents. 2013, in: Proceedings the IJCNLP 2013 conference (Nagoya, Japan). Conference paper. Camilo Thorne, Jakub Szymanik. Generalized Quantifier Distribution and Semantic Complexity. 2013, in: Pre-Proceedings of the TbiLLC2013 symposium (Tbilisi, Georgia). Extended abstract. Camilo Thorne, Elena Cardillo, Claudio Eccher, Marco Montali, Diego Calvanese. The VeriCliG Project: Extraction of Computer Interpretable Guidelines via Syntactic and Semantic Annotation. 2013, in: Proceedings of the ClinText2013 workshop (Potsdam, Germany).
4 2012 Camilo Thorne. Studying the Distribution of Fragments of English Using Deep Semantic Annotation. 2012, in: Proceedings of the ISA8 workshop (Pisa, Italy). Camilo Thorne, Diego Calvanese. Tractability and Intractability of Controlled Languages for Data Access. 2012, in: Studia Logica Special Issue on Logic and Language. Journal paper Camilo Thorne. Querying the Fragments of English. 2011, in: Proceedings of the WoLLIC 2011 workshop (Philadelphia, USA) Camilo Thorne. Query Answering over Ontologies Using Controlled Natural Languages. 2010, Free University of Bozen-Bolzano, Italy. PhD Thesis Camilo Thorne, Diego Calvanese. The Data Complexity of the Syllogistic Fragments of English. 2009, in: Proceedings of the AC 2009 colloquium. Workshop paper. Camilo Thorne, Diego Calvanese. Controlled English Ontology-Based Data Access. 2009, in: Proceedings of the CNL 2009 workshop. Camilo Thorne, Diego Calvanese. Tree Shaped Aggregate Questions over Ontologies. 2009, in: Proceedings of the FQAS 2009 conference. Conference paper. Camilo Thorne, Diego Calvanese. Exploring Controlled English Ontology-Based Data Access. 2009, in: Pre-Proceedings of the CNL 2009 workshop. Extended abstract Diego Calvanese, Evgeny Kharlamov, Werner Nutt, Camilo Thorne. Aggregate Queries over Ontologies. 2008, in: Proceedings of the ONISW 2008 workshop. Camilo Thorne. Expressing Conjunctive and Aggregate Queries over Ontologies with Controlled English. 2008, in: Proceedings of the ESSLLI 2008 student session Raffaella Bernardi, Francesca Bonin, Diego Calvanese, Domenico Carbotta, Camilo Thorne. English Querying over Ontologies: E-QuOnto. 2007, in: Proceedings of the AI*IA 2007 conference. Conference paper. Camilo Thorne. Managing Structured Data with Controlled English - An Approach based on Description Logics. 2007, in: Proceedings of the ESSLLI 2007 student session. Raffaella Bernardi, Diego Calvanese, Camilo Thorne. Expressing DL-Lite Ontologies with Controlled English. 2007, in: Proceedings of the DL 2007 workshop. Raffaella Bernardi, Diego Calvanese, Camilo Thorne. Lite Natural Language. 2007, in: Proceedings of the IWCS 2007 workshop. Camilo Thorne. Categorial Module Grammars Have Finite Bounded Density. 2007, in: Proceedings of the LATA 2007 conference. Conference paper Camilo Thorne, Victoria Uren, Jianhan Zhu. Extracting Domain Ontologies with CORDER. 2005, KMi. KMi report.
5 Programming Skills Code Repos Languages APIs, Tools & Resources Modeling For programming samples please browse: Java SDK 1.5 (good), SQL 3 (good), Python 2.6 (good), Prolog (average), Lisp (average), OCaml (average), R (average). Java APIs: JDBC, Servlet, DOM, Stanford NLP, WEKA, OpenNLP. Python APIs: Pyplot, Scipy, Numpy, NLTK. IDEs: Eclipse, Protégé (ontology development), RStudio. Versioning: SVN, Git. Databases: PostgreSQL. Reasoners: SPASS, Pellet. Parsers: Stanford, OpenNLP, Boxer Thesauri: WordNet, UMLS Metathesaurus. Other: L A TEX. MS Office OWL 1.1, UML class diagrams/er diagrams. Platforms Linux/UNIX, Windows, MacOS X. Foreign Language Skills & Interests Languages Spanish (native), English (C2), French (C2), Italian (B2), German (B2). Interests Presentations & Talks Slides Creative writing, jogging, swimming, trekking. To download the slides please browse: Process Fragment Recognition in Clinical Documents. AI*IA 2013 conference, Turin, Italy. Generalized Quantifier Distribution and Semantic Complexity. TbiLLC 2013 symposium, Gudauri, Georgia. The VeriCliG Project: Extraction of Computer Interpretable Guidelines via Syntactic and Semantic Annotation. CSLT 2013 workshop, Potsdam, Germany Studying the Distribution of Fragments of English Using Deep Semantic Annotation. ISA8 workshop, Pisa, Italy Semantic Complexity of Controlled Languages. TiLPS, Tilburg, Netherlands. Data-scalable Controlled Languages. SRI International, Menlo Park, USA. Querying the Fragments of English. WoLLIC 2011 workshop, Philadelphia, USA The Data Complexity of the Syllogistic Fragments of English. AC 2009 colloquium, Amsterdam, Netherlands. Tree Shaped Aggregate Questions over Ontologies. FQAS 2009 conference, Roskilde, Denmark. Exploring Controlled English Ontology-Based Data Access. CNL 2009 workshop, Marettimo, Italy.
6 2008 Aggregate Queries over Ontologies. ONISW 2008 workshop, Napa, USA Expressing DL-Lite Ontologies with Controlled English. DL 2007 workshop. Bressanone, Italy. Collaborations & Activities Dec 13 Aug 14 PC member, 4th Workshop on Controlled Natural Language (CNL 2014). Dec 12 pres Feb 12 Jan 14 Aug 11 May 11 Apr 11 May 11 Jan 11 pres Sep 10 Feb 08 Jan 10 References Prof. Diego Calvanese Dr. Marco Montali Prof. Raffaella Bernardi Dr. Claudio Eccher Collaborator, Institute for Logic, Language and Computation (ILLC), University of Amsterdam. Amsterdam, Netherlands. Collaborator, Fondazione Bruno Kessler (FBK). Trento, Italy. Visitor, computer science department, University of Concepción. Concepción, Chile. Visitor, SRI International. Menlo Park, USA. Visitor, TiLPS, Tilburg University. Tilburg, Netherlands. Reviewer, Journal of Logic, Language and Information (JoLLI). Visitor, computer science department, University of Chile. Santiago, Chile. Student representative, Academic Senate, Free University of Bozen-Bolzano. Bolzano, Italy. Free University of Bozen-Bolzano 3 Piazza Domenicani, 39100, Bolzano, Italy Tel: (+39) calvanese@inf.unibz.it Free University of Bozen-Bolzano 3 Piazza Domenicani, 39100, Bolzano, Italy Tel: (+39) montali@inf.unibz.it University of Trento Via Sommarive 14, 38123, Povo di Trento, Italy Tel: (+39) bernardi@disi.unitn.it FBK - Fondazione Bruno Kessler Via Sommarive 18, 38123, Povo di Trento, Italy Tel: (+39) eccher@fbk.eu Povo di Trento,
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