Accelerating research progress by facilitating more effective reuse of research data

Transcription

1 Heather Piwowar Research Passion Accelerating research progress by facilitating more effective reuse of research data Current Position Postdoctoral Research Associate Vancouver BC, Canada Duke University, funded by the Alfred P. Sloan Foundation, and the NSF through NESCent, Dryad, and DataONE. June 2010 present. PI: Dr Todd Vision Research studies in science data sharing and reuse, Co-PI on ImpactStory. Education University of Pittsburgh Pittsburgh, PA PhD in 2010, Masters of Science in 2006, concentration in Bioinformatics Department of Biomedical Informatics, School of Medicine (maternity leave: April-June 2006). Advisor: Dr Wendy Chapman. Dissertation: Foundational studies for measuring the impact, prevalence, and patterns of publicly sharing biomedical research data Massachusetts Institute of Technology Cambridge, MA Masters of Engineering in 1996, Bachelors of Science in Majored in Electrical Engineering and Computer Science, GPA 4.9/5.0 Concentration in Digital Signal Processing (DSP) Academic Experience & Accomplishments Peer-reviewed Journal Articles Piwowar (2011) Who shares? Who doesn t? Bibliometric factors associated with open data archiving. PLoS ONE 6(7): e McDade, Maddison, Guralnick, Piwowar, Jameson, Helgen, Herendeen, Hill, and Vis (2011) Biology Needs a Modern Assessment System for Professional Productivity. BioScience 61: Garnett, Whiteley, Piwowar, Rasmussen, Illes (2011) Neuroethics and fmri: Mapping a Fledgling Relationship. PLoS ONE 6(4): e Piwowar, Chapman (2010) Recall and bias of retrieving gene expression microarray datasets through PubMed identifiers. J Biomed Discov Collab. Mar 28;5:7-20 Piwowar, Chapman (2010) Public sharing of research datasets: A pilot study of associations. Journal of Informetrics 4: April (also presented at Symposium on Informetrics&Scientometrics ASIS&T and ISSI Pre-conference 2009) Piwowar, Becich, Bilofsky, Crowley (2008) Towards a Data Sharing Culture: Recommendations for Leadership from Academic Health Centers. PLoS Med 5(9): e183. Piwowar, Day, Fridsma (2007) Sharing detailed research data is associated with increased citation rate. PLoS ONE. PLoS ONE 2(3): e308. Heather Piwowar. Updated May 2013, page 1 of 6.

2 Peer-reviewed Conference Papers Invited articles and letters to the editor Preprints Datasets Priem, Piwowar, Hemminger. Altmetrics in the wild: An exploratory study of impact metrics based on social media. Metrics 2011: Symposium on Informetric and Scientometric Research at ASIS&T. Piwowar, Chapman (2008) Linking database submissions to primary citations with PubMed Central In: BioLINK Piwowar, Chapman (2008) Identifying Data Sharing in Biomedical Literature In: AMIA 2008 Annual Symposium. Piwowar (2008) Prevalence and Patterns of Biomedical Research Data Reuse In: JCDL 2008 Doctoral Consortium. Piwowar, Chapman (2008) A review of journal policies for sharing research data In: ELPUB Harkema, Piwowar, Amizadeh, Dowling, Ferraro, Haug, Chapman. (2008) A Baseline System for the i2b2 Obesity Challenge, i2b Workshop. Piwowar (2013) Altmetrics: What, Why, and Where? ASIST Bulletin April/May. Piwowar and Priem (2013) The power of altmetrics on a CV. ASIST Bulletin April/May. Piwowar (2013) Value all research products. Nature 493,159. Piwowar, Vision, Whitlock (2011) Data archiving is a good investment. Nature 473, 285. Lapinski, Piwowar, Priem (2013) Riding the crest of the altmetrics wave: How librarians can help prepare faculty for the next generation of research impact metrics. arxiv: Vision and Piwowar (2013) Data reuse and scholarly reward: understanding practice and building infrastructure. PeerJ PrePrints 1:e14v1 Piwowar and Vision. (2013) Data reuse and the open data citation advantage. PeerJ PrePrints 1:e1http://dx.doi.org/ /peerj.preprints.1 Priem*, Piwowar*, Hemminger (2012) Altmetrics in the wild: Using social media to explore scholarly impact. arxiv: (* equal contribution) Garnett, Piwowar, Rasmussen, and Illes. (2010) Formulating MEDLINE queries for article retrieval based on PubMed exemplars. Available from Nature Precedings Piwowar and Chapman. Using open access literature to guide full-text query formulation. (2010) Available from Nature Precedings Piwowar, Vision, Whitlock (2011) Data from: Data archiving is a good investment. Dryad Digital Repository. doi: /dryad.j1fd7 Piwowar (2011) Data from: Who shares? Who doesn t? Factors associated with openly archiving raw research data. Dryad Digital Repository. doi: /dryad.mf1sd Piwowar, Chapman (2009) Data from: Public sharing of research datasets: a pilot study of associations. Dryad Digital Repository. doi: /dryad.3td2f Piwowar, Day, Fridsma (2007) Data from: Sharing detailed research data is associated with increased citation rate. Dryad Digital Repository. doi: /dryad.j2c4g Heather Piwowar. Updated May 2013, page 2 of 6.

3 Abstracts, Panels, Posters and Demos Invited Presentations Piwowar, Priem. total-impact demo, altmetrics12. Priem, Piwowar. total-impact demo, Startup-Up Science Piwowar. DataONE postdoc research progress. Poster, DataONE All Hands Meeting Piwowar, Carlson, Vision. Beginning to Track 1000 Datasets from Public Repositories into the Published Literature. ASIS&T Garnett, Holmberg, Pikas, Piwowar, Priem, Weber. Shaken and Stirred: ASIS&T 2011 Attendee Reactions to Shaking It Up: Embracing New Methods for Publishing, Finding, Discussing and Measuring Our Research Output. Poster ASIS&T Garnett, Holmberg, Pikas, Piwowar, Priem, Weber. Shaking It Up: Embracing New Methods for Publishing, Finding, Discussing+Measuring Our Research Output. Panel at ASIS&T Enriquez, Judson, Weber, Allard, Cook, Piwowar, Sandusky, Vision, Wilson. Data citation in the wild. IDCC Piwowar. Demonstration of the Dryad Data Repository. Science Online Weber, Piwowar, Vision. Evaluating Data Citation+Sharing Policies in Earth Sciences. ASIS&T Piwowar. A method to track dataset reuse in biomedicine: filtered GEO accession numbers in PubMed Central. ASIS&T Piwowar. Who shares? Who doesn t? Bibliometric factors associated with open archiving of biomedical datasets. ASIS&T Garnett, Piwowar, Rasmussen, Illes. Expediting medical literature coding with querybuilding. ASIS&T Garnett, Piwowar, Whiteley, Rasmussen, Illes. Neuroethics and fmri: Who Cites Whom? Society for Neuroscience Piwowar, Chapman (2008) Envisioning a Biomedical Data Reuse Registry AMIA 2008 Piwowar, Chapman (2008) Prevalence and Patterns of Microarray Data Sharing PSB 2008 Piwowar, Fridsma (2007) Examining the uses of shared data ISMB 2007 (2013) No more waiting! Tools that work Today to reveal dataset use. RDAP, remote. (2013) Integrate and Analyze. Research Data Symposium, Columbia Uni, remote. (2013) ALA midwinter ACRL/SPARC forum: How libraries can empower scholars (and scholarly communication) through altmetrics. Seattle WA. (2013) webinar: Uncovering Impact. Research Trends. (2012) webinar: PLOS internal presentation on A Year in Open Access. (2012) webinar: Impact beyond the Impact Factor. Ed Future. (2012) webinar: Impact beyond the Impact Factor and beyond the article. RSC. (2012) webinar: Making Metrics Count. ANDS. (2012) Charleston Conference: Text Mining from three perspectives. Charleston SC. (2012) Charleston Conference: panel on altmetrics. Charleston SC. (2012) Charleston Conference: panel organizer and speaker on empower scholars through altmetrics. Charleston SC. (2012) Keynote for launch of data portal initiative, SFU, Vancouver. (2012) Uncovering the Impact Story of Open Research. UBC OA week, Vancouver. (2012) Open research data: fun, important, + in need of librarians. CLA Ottawa. (2012) Broad shoulders in scholarly communication: data archiving and altmetrics. Highwire Spring Members Meeting. (2012) Organizer, moderator, and speaker for session on Open Research Data at AAAS. (2011) A future were data citation Counts. Int Digital Curation Conference. Bristol, UK. Heather Piwowar. Updated May 2013, page 3 of 6.

4 (2011) BMJ internal workshop on The Future of Research Dissemination, London. (2011) Recycle, reuse, research: Using open data in scholarly research, OA week SFU. (2011) New Directions in Scholarly Communication, OA week SLA Online Seminar. (2011) Open Access for Climate Scientists 2011, OA week online DTU Denmark. (2011) Open research data: fun, important, + in need of librarians. ACCESS11 Vancouver (2011) Preliminary report on Tracking 1000 Datasets. ASIS&T SIGUSE workshop. (2011) Data citation challenges. DataCite Summer Meeting, Berkeley CA. (2011) Data reuse and data citation. Dryad Board Meeting, Vancouver. (2011) Tracking Data Reuse: Motivations, Methods, and Obstacles. IASSIST Vancouver. (2011) Citation Challenges. JISC, Managing Research Data, UK. (2011) Towards Evidence-Based Data Sharing Policies. NESCent, NC. (2011) Open discussion on Research Data Sharing. Scholarly Comm at Duke University. (2011) Measuring More, Publishing More. With J Priem and K Costello. UNC Scholarly Communications Working Group. (2011) Data Sharing, Reuse, and Policy. UNC Digital Scholarship Group. (2010) Researching Open Research Data. Open Access Week, UBC Vancouver (2010) Who Shares? Who Doesn t? Biodiversity Lunchtime Internal Seminar Series, UBC (2010) Leaders and laggards in preserving raw biomedical research data, NEDCC Conference, Boston MA. (2010) Measuring progress toward a cultural norm of shared (and reused!) biomedical research data NESCent, Durham NC (2009) Doctoral proposal at Award winning student papers. ASIS&T, Vancouver (2009) Data sharing: Pilot study of associations. DBMI Colloquium, U of Pittsburgh (2009) Measuring the Adoption of Open Science. PSB Open Science Workshop, Hawaii (2009) Intro to Test Driven Development. DBMI Computer Users Group, U of Pittsburgh (2008) Why study Data Sharing? (+ why share your data) DBMI Colloq, U of Pittsburgh (2007) Sharing Detailed Research Data is Associated with Increased Citation Rate NLM Trainee Conference, Stanford University CA Teaching and Mentoring Experience (2012) Guest lecturer on class on Data Preservation for U of Ottawa Digital Libraries course (2011) Guest lecturer on class on Data Preservation for UBC SLAIS Digital Libraries course (2011) Primary mentor for one masters-level summer intern (DataONE online internships) (2011) Primary contact for one undergraduate research assistant (2010) Primary mentor for three masters-level summer interns (DataONE online internships) (2008) DBMI Intro to Research: guest discussion on Open Science (2006, 2007,2008) DBMI Intro to BioMed Informatics guest lecture: Informatics in Industry (2007) Series of informal Brown Bag Skill Seminars (RSS, Entrez tools, Excel tricks) (2007) Teaching assistant: Intro to Biomedical Informatics Heather Piwowar. Updated May 2013, page 4 of 6.

5 Recent Awards, Honours, and Grants (2012) Honourable Mention for UBC's Innovative Dissemination of Research Award (2011) total-impact named in top 10+1 apps in #binarybattle and one of 3 PLoS Picks (2011) SciFoo participant (2010) ASIS&T SIGUSE Elfreda A. Chatman Research Proposal Award (2009) Thomson Reuters Doctoral Dissertation Proposal Scholarship, through ASIS&T (2009) Best Trainee Poster Award, Department of Biomedical Informatics, U of Pittsburgh (2008) Best Trainee Poster Award, Department of Biomedical Informatics, U of Pittsburgh (2008) U Pittsburgh Dept Biomedical Informatics ELPUB travel grant (2008) ASIS&T SIGUSE doctoral student travel award (2007) Doctoral Comprehensive Exam passed with High Honors (2007) NSF ISMB travel grant (2007) Best Trainee Paper Award, Department of Biomedical Informatics, U of Pittsburgh ( ) NIH NLM Biomedical Informatics training fellowship Service Online Presence and Media Computational Experience (2013) Guest editor for ASIS&T Bulletin special focus on altmetrics (2012-present) Advisory member for F1000Research, ScienceExchange, and the Reproducibility Initiative (2012) Organized AAAS session on Open Research Data (2011-present) Guest editor of Open Data series at BMC Research Notes (2010) Volunteer organizer for Is It Open (Data)? OKFN initiative ( ) DBMI Student rep to Admissions and Training Program Core Committees Reviewer for Information Retrieval, Methods of Information in Medicine, PLoS ONE, ASIS&T, International Journal of Digital Curation, Nature Genetics, and others. I sign my reviews unless it is against journal policy. Research Blog Twitter (@researchremix), FriendFeed, Slideshare, G+, etc. My research and advocacy has been covered by Nature News, The Guardian, The Chronicle of Higher Education, CBC radio, Suber s OA newsletter, the New Yorker blog, and other venues. Actively using: Python, R, GitHub, Entrez web services Previously used: Java, Lisp, C, Analog Devices DSP assembly code, StrongARM assembly code, SQL, Matlab, Weka Heather Piwowar. Updated May 2013, page 5 of 6.

6 Industrial Experience & Accomplishments Precision Therapeutics, Inc. Pittsburgh, PA 35 (now >200) people, provides personalized cancer therapy information to oncologists Consultant, Contributed to a new, strategically critical bioinformatics algorithm Director of Clinical Informatics, Co-led the design and implementation of all clinical trials analysis Senior Systems Developer, Designed, implemented, and supported HIPAA-compliant intranet web applications for corporate data viewing and editing, using Java/J2EE and Oracle Contributed ideas, analyses, and tools for use throughout the organization Vocollect, Inc. Pittsburgh, PA 30 (now >350) people, develops portable voice interface computers Senior Software Developer, Ported an embedded system to Windows CE and continued to develop and maintain C and assembly code, as a member of a small team Improved the speech recognition accuracy of our product, as a member of a small team Co-led a skunk works project to envision and prototype our real-time enterprise management product as a web application Contributed to department learning lunches and company vision statement Manager of Customer Service, 1999 Managed a 12-person Customer Service team for 6 months Ascend Communications, Inc. (now Lucent) Alameda, CA 200 people, developed internet remote access concentrators Software Engineer, Responsible for implementation of Japanese mobile phone data service software, working directly with NTT Worked to develop competitor to Rockwell s 56K embedded concentrator modem chips Heather Piwowar. Updated May 2013, page 6 of 6.