Oxygen-Binding Proteins



Similar documents
Myoglobin and Hemoglobin

Biochemistry 462a Hemoglobin Structure and Function Reading - Chapter 7 Practice problems - Chapter 7: 1-6; Proteins extra problems

HEMOGLOBIN AND MYOGLOBIN

Chapter 12 - Proteins


TRANSPORT OF BLOOD GASES From The Lungs To The Tissues & Back

A. A peptide with 12 amino acids has the following amino acid composition: 2 Met, 1 Tyr, 1 Trp, 2 Glu, 1 Lys, 1 Arg, 1 Thr, 1 Asn, 1 Ile, 1 Cys

Oxygen Dissociation Curve

Structures of Proteins. Primary structure - amino acid sequence

Disulfide Bonds at the Hair Salon

Determinants of Blood Oxygen Content Instructor s Guide

Amino Acids. Amino acids are the building blocks of proteins. All AA s have the same basic structure: Side Chain. Alpha Carbon. Carboxyl. Group.

Proteins the primary biological macromolecules of living organisms

Enzymes. Enzyme Structure. Enzyme Classification. CHEM464/Medh, J.D. Reaction Rate and Enzyme Activity

Chapter 8: An Introduction to Metabolism

How To Understand Enzyme Kinetics

IV. -Amino Acids: carboxyl and amino groups bonded to -Carbon. V. Polypeptides and Proteins

Lecture 15: Enzymes & Kinetics Mechanisms

Enzymes. Enzymes are characterized by: Specificity - highly specific for substrates

Peptide bonds: resonance structure. Properties of proteins: Peptide bonds and side chains. Dihedral angles. Peptide bond. Protein physics, Lecture 5

Structure of proteins

Pipe Cleaner Proteins. Essential question: How does the structure of proteins relate to their function in the cell?

Helices From Readily in Biological Structures

Recap. Lecture 2. Protein conformation. Proteins. 8 types of protein function 10/21/10. Proteins.. > 50% dry weight of a cell

Chapter 1 Dissolved Oxygen in the Blood

INTRODUCTION TO PROTEIN STRUCTURE

ENZYMES. Serine Proteases Chymotrypsin, Trypsin, Elastase, Subtisisin. Principle of Enzyme Catalysis

The peptide bond is rigid and planar

Ionization of amino acids

Review of Chemical Equilibrium 7.51 September free [A] (µm)

18.2 Protein Structure and Function: An Overview

Built from 20 kinds of amino acids

TRANSPORT OF OXYGEN AND CARBON DIOXIDE IN BLOOD

Paper: 6 Chemistry University I Chemistry: Models Page: 2 of Which of the following weak acids would make the best buffer at ph = 5.0?

This class deals with the fundamental structural features of proteins, which one can understand from the structure of amino acids, and how they are

Lecture Conformation of proteins Conformation of a protein three-dimensional structure native state. native condition

Previous lecture: Today:

Chemistry 20 Chapters 15 Enzymes

Quaternary structure

8/20/2012 H C OH H R. Proteins

Advanced Medicinal & Pharmaceutical Chemistry CHEM 5412 Dept. of Chemistry, TAMUK

THE ELECTRON TRANSPORT CHAIN. Oxidative phosphorylation

Lecture 11 Enzymes: Kinetics

Energy Production In A Cell (Chapter 25 Metabolism)

Protein Physics. A. V. Finkelstein & O. B. Ptitsyn LECTURE 1

21.8 The Citric Acid Cycle

Amino Acids as Acids, Bases and Buffers:

Chapter 16 Amino Acids, Proteins, and Enzymes

Introduction to Protein Folding

The Citric Acid Cycle

How To Understand The Chemistry Of Organic Molecules

Refinement of a pdb-structure and Convert

Carbohydrates, proteins and lipids

The Organic Chemistry of Amino Acids, Peptides, and Proteins

Jerry-Built Forever. We think all that matters can t be deep, but chunk-toknowledge-chunk. veins, and we, mind-armed miners

Structure and properties of proteins. Vladimíra Kvasnicová

Nafith Abu Tarboush DDS, MSc, PhD

Shu-Ping Lin, Ph.D.

The Electron Transport Chain

Chapter 3. Protein Structure and Function

Chapter 8: Energy and Metabolism

A. Essentially the order of Pt II affinity for these ligands (their Lewis basicity or nucleophilicity)

CSC 2427: Algorithms for Molecular Biology Spring Lecture 16 March 10

Blood. Blood. Blood Composition. Blood Composition. Fractionation & Hemopoesis

ATP Synthesis. Lecture 13. Dr. Neil Docherty

Biological molecules:

Chapter 3: Biological Molecules. 1. Carbohydrates 2. Lipids 3. Proteins 4. Nucleic Acids

Part A: Amino Acids and Peptides (Is the peptide IAG the same as the peptide GAI?)

Control of Gene Expression

Copyright Mark Brandt, Ph.D. 54

Chapter 9 Mitochondrial Structure and Function

MCAT Organic Chemistry - Problem Drill 23: Amino Acids, Peptides and Proteins

Summary of Metabolism. Mechanism of Enzyme Action

The amount of cellular adenine is constant. -It exists as either ATP, ADP, or AMP (the concentration of these vary)

Math 231:Introduction to Ordinary Differential Equations Mini-Project: Modeling Chemical Reaction Mechanisms

CHM333 LECTURE 13 14: 2/13 15/13 SPRING 2013 Professor Christine Hrycyna

Combinatorial Biochemistry and Phage Display

Exam 4 Outline CH 105 Spring 2012

Elements in Biological Molecules

Before continuing, try to answer the following questions. The answers can be found at the end of the article.

Lecture 3: Enzyme kinetics

(c) How would your answers to problem (a) change if the molecular weight of the protein was 100,000 Dalton?

A disaccharide is formed when a dehydration reaction joins two monosaccharides. This covalent bond is called a glycosidic linkage.

Cyclooxygenase and NSAIDs

Amino Acids, Peptides, Proteins

CHAPTER 29 AMINO ACIDS, POLYPEPTIDES, AND PROTEINS SOLUTIONS TO REVIEW QUESTIONS

Enzymes and Metabolic Pathways

H H N - C - C 2 R. Three possible forms (not counting R group) depending on ph

CHAPTER 6 AN INTRODUCTION TO METABOLISM. Section B: Enzymes

Enzymes reduce the activation energy

Hydrogen Bonds The electrostatic nature of hydrogen bonds

Energy & Enzymes. Life requires energy for maintenance of order, growth, and reproduction. The energy living things use is chemical energy.

CHEMISTRY 101 EXAM 3 (FORM B) DR. SIMON NORTH

Conformational Properties of Polypeptide Chains

Worksheet Chapter 13: Human biochemistry glossary

Chapter 2 Polar Covalent Bonds; Acids and Bases

Where Is My Lone Pair?

Chapter 3 Molecules of Cells

Amino Acids, Proteins, and Enzymes. Primary and Secondary Structure Tertiary and Quaternary Structure Protein Hydrolysis and Denaturation

I N V E S T I C E D O R O Z V O J E V Z D Ě L Á V Á N Í

Transcription:

Oxygen-Binding Proteins Myoglobin, Hemoglobin, Cytochromes bind O 2. Oxygen is transported from lungs to various tissues via blood in association with hemoglobin In muscle, hemoglobin gives up O 2 to myoglobin which has a higher affinity for O 2 than hemoglobin. Oxygen-binding curve for hemoglobin is sigmoidal whereas for myoglobin it is hyperbolic. This facilitates transfer of O 2 to myoglobin. Cytochromes participate is redox reactions and are components of the electron transport chain.

Hemoglobin Structure Hemoglobin is a O 2 transport protein found in the RBCs Hemoglobin is an oligomeric protein made up of 2 αβ dimers, a total of 4 polypeptide chains: α 1 β 1 α 2 β 2. Total M r of hemoglobin is 64,500. The α (141 aa) and β (146 aa) subunits have < 50 % identity. The 3D- structures of α (141 aa) and β (146 aa) subunits of hemoglobin and the single polypeptide of myoglobin are very similar; all three are members of the globin family. Each Hb subunit consists of 7 (α) or 8 (β) alpha helices and several bends and loops folded into a single globin domain. Each subunit has a heme-binding pocket.

The Prosthetic Heme Group The heme group is responsible for the O 2 -binding capacity of hemoglobin. The heme group consists of the planar aromatic protoporphyrin made up of four pyrrole rings linked by methane bridges. A Fe atom in its ferrous state (Fe +2 ) is at the center of protoporphyrin. Fe +2 has 6 coordination bonds, four bonded to the 4 pyrrole N atoms. The nucleophilic N prevent oxidation of Fe +2. The two additional binding sites are one on either side of the heme plane. One of these is occupied by the imidazole group of His. The second site can be reversibly occupied by O 2, which is hydrogen-bonded to another His.

Different forms of Hemoglobin When hemoglobin is bound to O 2, it is called oxyhemoglobin. This is the relaxed (R ) state. The form with a vacant O 2 binding site is called deoxyhemoglobin and corresponds to the tense (T) state. If iron is in the oxidized state as Fe +3, it is unable to bind O 2 and this form is called as methemoglobin CO and NO have higher affinity for heme Fe +2 than O 2 and can displace O 2 from Hb, accounting for their toxicity.

T and R states of Hemoglobin Hemoglobin exists in two major conformational states: Relaxed (R ) and Tense (T) R state has a higher affinity for O 2. In the absence of O 2, T state is more stable; when O 2 binds, R state is more stable, so hemoglobin undergoes a conformational change to the R state. The structural change involves readjustment of interactions between subunits.

Changes Induced by O 2 Binding O 2 binding rearranges electrons within Fe +2 making it more compact so that it fits snugly within the plane of porphyrin. Since Fe is bound to histidine of the globin domain, when Fe moves, the entire subunit undergoes a conformational change. This causes hemoglobin to transition from the tense (T) state to the relaxed (R) state. The α 1 β 1 and α 2 β 2 dimers rearrange and rotate approximately 15 degrees with respect to each other Inter-subunit interactions influence O 2 binding to all 4 subunits resulting in cooperativity.

O 2 -binding kinetics Four subunits, so four O 2 -binding sites O 2 binding is cooperative meaning that each subsequent O 2 binds with a higher affinity than the previous one Similarly, when one O 2 is dissociated, the other three will dissociate at a sequentially faster rate. Due to positive cooperativity, a single molecule is very rarely partially oxygenated. There is always a combination of oxygenated and deoxygenated hemoglobin molecules. The percentage of hemoglobin molecules that remain oxygenated is represented by its oxygen saturation. O 2 -binding curves show hemoglobin saturation as a function of the partial pressure for O 2.

Oxygen Saturation Curve Saturation is maximum at very high O 2 pressure in the lungs (po 2 = ~ 100 torr). As hemoglobin moves to peripheral organs and the O 2 pressure drops (po 2 = ~20 torr), saturation also drops allowing O 2 to be supplied to the tissues. Due to co-operative binding of O 2 to hemoglobin, its oxygen saturation curve is sigmoid. Such a curve ensures that at lower po 2, small differences in O 2 pressure result in big changes in O 2 saturation of hemoglobin. This facilitates dissociation of O 2 in peripheral tissues.

Effectors of O 2 binding Small molecules that influence the O 2 -binding capacity of hemoglobin are called effectors (allosteric regulation). Effectors may be positive or negative; homotropic or heterotropic effectors. Oxygen is a homotropic positive effector. Positive effectors shift the O 2 -binding curve to the left, negative effectors shift the curve to the right. From a physiological view, negative effectors are beneficial since they increase the supply of oxygen to the tissues.

The Bohr Effect The regulation of O 2 -binding to hemoglobin by H + and CO 2 is called the Bohr effect Both H + and CO 2 are negative effectors of O 2 -binding. Addition of a proton to His imidazole group at C-terminus of β- subunit facilitates formation of salt bridge between His and Asp and stabilization of the T quaternary structure of deoxyhemoglobin. CO 2 reduces O 2 affinity by reacting with terminal NH 2 to form negatively charged carbamate groups Metabolically active tissues need more O 2 ; they generate more CO 2 and H + which causes hemoglobin to release its O 2.

2,3-Bisphosphoglycerate 2,3-Bisphosphoglycerate is a negative effector. A single 2,3-BPG binds to a central pocket of deoxyhemoglobin and stabilizes it by interacting with three positively charged aa of each β-chain. 2,3-BPG is normally present in RBCs and shifts the O 2 -saturation curve to the right Thus, 2,3-BPG favors oxygen dissociation and therefore its supply to tissues In the event of hypoxia, the body adapts by increasing the concentration of 2,3-BPG in the RBC

Fetal Hemoglobin Fetal hemoglobin has 2 α and 2 γ chains The g chain is 72% identical to the b chain. A His involved in binding to 2,3-BPG is replaced with Ser. Thus, fetal Hb has two less + charge than adult Hb. The binding affinity of fetal hemoglobin for 2,3-BPG is significantly lower than that of adult hemoglobin Thus, the O 2 saturation capacity of fetal hemoglobin is greater than that of adult hemoglobin This allows for the transfer of maternal O 2 to the developing fetus