CanReg5 Webinar 4: Data Entry
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1 CanReg5 Webinar 4: Data Entry Morten Ervik International Agency for Research on Cancer, Lyon, France Lyon, France, 04 September 2012
2 Outline Entering a case Using browse/filter to find cases Import Live Demo Summary
3 Outline Entering a case Using browse/filter to find cases Import Live Demo Summary
4 Create new record
5 Create new record Notice the split between patient, tumour and source. The data entry form is highly customizable. Four different variable types: Numbers Text Coded values (dictionaries) Dates
6 Entering the patient information First we enter the patient information. Interactive code validation.
7 Patient deduplication Probabilistic matching. User configurable. What variables should be involved. What are their weights. CanReg5 can only assist in this matter. Up to the user to decide if two patient records matches.
8 Entering the tumour and source information Enter tumour and source information.
9 Run checks Run cross validation by clicking Run Checks on the tumour part of the form. The first ting this does is to see if all mandatory variables are present. If so, the cross validations are performed site and sex, site and morphology, etc.
10 Results from the cross validation The results are graded: OK means no error found Invalid means that some error were found and the case cannot be confirmed. Example: woman with prostate cancers Rare means that something suspicios was found and the case can only be confirmed by a supervisor. Example: some combinations of morhpology and topography After everything is OK the case can be confirmed and it will then show up in analysis.
11 Outline Entering a case Using browse/filter to find cases Import Live Demo Summary
12 The browser A look into the heart of the CanReg5 program. Choose what table (tumour, patient, source) or combination of tables you want to look at.
13 Filter the cases Filter by any variable collected. The filter wizard can help you build a filter.
14 Outline Entering a case Using browse/filter to find cases Import Live Demo Summary
15 Import from another CanReg5 system File -> Data Entry -> Import Data Click No to the question Do you have all your data in one file? Choose the files containing the data we exported from another CanReg5 system. Preview it to see that it looks OK. Associate variables. CanReg tries to guess where to store each variable, but verify to be sure. Go to Import File Click Import - and wait.
16 After data import Verify number of tumours in the database to make sure all cases have been imported. Browse the data to see if you see anything suspicious. If you do, confirm the existence also in the other CanReg5 system.
17 Outline Entering a case Using browse/filter to find cases Import Live Demo Summary
18 Live Demo
19 Outline Entering a case Using browse/filter to find cases Import Live Demo Summary
20 Summary Enter cases to a CanReg5 database Browser Interactive code validation Patient deduplication Cross validation Tumour deduplication Import data from another CanReg5 system How to enter population datasets and edit dictioanaries in upcoming webinars.
21 Summary Enter cases to a CanReg5 database Browser Interactive code validation Patient deduplication Cross validation Tumour deduplication Import data from another CanReg5 system How to enter population datasets and edit dictioanaries in upcoming webinars.
22 Summary Enter cases to a CanReg5 database Browser Interactive code validation Patient deduplication Cross validation Tumour deduplication Import data from another CanReg5 system How to enter population datasets and edit dictioanaries in upcoming webinars.
23 Summary Enter cases to a CanReg5 database Browser Interactive code validation Patient deduplication Cross validation Tumour deduplication Import data from another CanReg5 system How to enter population datasets and edit dictioanaries in upcoming webinars.
24 Future webinars Next webinars: 23rd of October, at 14h00. Theme: Data analysis 4th of December, at 14h00. Theme: Customization, etc Please send suggestions to to propose additional topics. Slides and videos will be put online at the GICR website;
25 For Further Information I Ervik, Morten CanReg5 - the handbook Available online at the IACR web page under software CanReg5 web page twitter feed
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