The structure and properties of gluten: an elastic protein from wheat grain
|
|
|
- Gladys Richardson
- 9 years ago
- Views:
Transcription
1 Published online 25 February 2002 The structure and properties of gluten: an elastic protein from wheat grain Peter R. Shewry 1*, Nigel G. Halford 1, Peter S. Belton 2 and Arthur S. Tatham 1 1 Institute of Arable Crops Research, Long Ashton Research Station, Department of Agricultural Science, University of Bristol, Long Ashton, Bristol BS41 9AF, UK 2 School of Chemical Sciences, University of East Anglia, Norwich NR47TJ, UK The wheat gluten proteins correspond to the major storage proteins that are deposited in the starchy endosperm cells of the developing grain. These form a continuous proteinaceous matrix in the cells of the mature dry grain and are brought together to form a continuous viscoelastic network when flour is mixed with water to form dough. These viscoelastic properties underpin the utilization of wheat to give bread and other processed foods. One group of gluten proteins, the HMM subunits of glutenin, is particularly important in conferring high levels of elasticity (i.e. dough strength). These proteins are present in HMM polymers that are stabilized by disulphide bonds and are considered to form the elastic backbone of gluten. However, the glutamine-rich repetitive sequences that comprise the central parts of the HMM subunits also form extensive arrays of interchain hydrogen bonds that may contribute to the elastic properties via a loop and train mechanism. Genetic engineering can be used to manipulate the amount and composition of the HMM subunits, leading to either increased dough strength or to more drastic changes in gluten structure and properties. Keywords: wheat; gluten; protein elasticity; HMM subunits; transgenic plants 1. INTRODUCTION Wheat is one of the three most important crops in the world, together with maize and rice. Approximately 600 million tonnes are harvested annually with cultivation extending over a vast geographical area, from Scandinavia to Argentina, including higher elevations in the tropics. Although the ability to give high yields under a range of conditions has contributed to the success of wheat, the most important factor has been the unique properties of wheat dough that allow it to be processed into a range of foodstuffs, notably bread, other baked products and pastas. These properties are usually described as viscoelasticity, with the balance between the extensibility and elasticity determining the end use quality. For example, highly elastic ( strong ) doughs are required for breadmaking but more extensible doughs are required for making cakes and biscuits. The grain proteins determine the viscoelastic properties of dough, in particular, the storage proteins that form a network in the dough called gluten (Schofield 1994). Consequently, the gluten proteins have been widely studied over a period in excess of 250 yr, in order to determine their structures and properties and to provide a basis for manipulating and improving end use quality (see Shewry et al. 1995). 2. THE ORIGIN OF THE WHEAT GLUTEN NETWORK Gluten can be readily prepared by gently washing dough under a stream of running water. This removes the bulk * Author for correspondence ([email protected]). of the soluble and particulate matter to leave a proteinaceous mass that retains its cohesiveness on stretching (figure 1a). Gluten comprises some 75% protein on a dry weight basis, with most of the remainder being starch and lipids. Furthermore, the vast majority of the proteins are of a single type called prolamins. Prolamins are a group of proteins that were initially defined based on their solubility in alcohol water mixtures (Osborne 1924), typically 60 70% (v/v) ethanol. This definition has since been extended to include related proteins, which are not soluble in alcohol water mixtures in the native state, owing to their presence in polymers stabilized by interchain disulphide bonds. In wheat, these groups of monomeric and polymeric prolamins are known as gliadins and glutenins, respectively, and together form gluten (Shewry et al. 1986). Wheat prolamins are the major storage proteins present in the starchy endosperm cells of the grain, where they are synthesized and deposited via the secretory system. Thus, the individual polypeptides are synthesized on ribosomes on the RER and pass via the usual translocation machinery into the lumen, with the loss of an N-terminal signal peptide. Once within the lumen it is probable that protein folding and disulphide bond formation occur with no further post-translational modifications taking place (i.e. no glycosylation or proteolysis as may occur with other types of seed storage protein). The subsequent fate of the proteins may also vary with the protein type and with the age and stage of development of the tissue. Some of the proteins appear to be transported via the Golgi apparatus into the vacuole, where they form protein deposits (see Shewry 1999). However, others appear to accumulate directly within the 357, The Royal Society DOI /rstb
2 134 P. R. Shewry and others Wheat gluten proteins (a) (b) IEF As a result of the formation of a protein matrix, individual cells of wheat flour contain networks of gluten proteins, which are brought together during dough mixing. The precise changes that occur in the dough during mixing are still not completely understood, but an increase in dough stiffness occurs that is generally considered to result from optimization of protein protein interactions within the gluten network. In molecular terms, this optimization may include some exchange of disulphide bonds as mixing in air, oxygen and nitrogen result in different effects on the sulphydryl and disulphide contents of dough (Tsen & Bushuk 1963; Mecham & Knapp 1966). Of course, the natural fate of the wheat grain is not to provide flour for humankind but to germinate to produce a new plant. The biological role of the gluten protein is, therefore, to provide a store of carbon, nitrogen and sulphur to support seed germination and seedling growth. The gluten proteins have no other known biological role and their viscoelastic properties appear to be a purely fortuitous consequence of their sequences and interactions. Figure 1. (a) A sheet of gluten stretched to demonstrate its cohesive properties. (b) Two-dimensional analysis (isoelectric focusing followed by SDS PAGE) of wheat gluten proteins shows multiple components. lumen of the ER to form a second population of protein bodies. Galili (1997) has proposed that vesicles subsequently engulf the latter, with the contents being internalized into vacuoles but to date this has not been confirmed by other workers. What is known is that during the later stages of grain maturation the starchy endosperm cells become disrupted and die and the protein bodies fuse to form a continuous matrix, which surrounds the starch granules and engulfs other organelles and membranes. Galili (1997) has also suggested that the gliadins are preferentially transported to the vacuole via the Golgi apparatus, which is consistent with the lack of a classical ER retention sequence. We have also shown that a γ- gliadin is rapidly degraded in leaves and seeds of transgenic tobacco (presumably in the vacuole) unless a C-terminal ER retention sequence (the tetrapeptide His Asp Glu Leu or Lys Asp Glu Leu) is added (Napier et al. 1997). However, the glutenins also lack an obvious ER retention sequence but, nevertheless, Galili (1997) has proposed that they are preferentially retained in the ER. In this case, their rapid assembly into high M r polymers, which precipitate and accumulate directly within the ER lumen, could determine retention. It is also possible to envisage how the relative rates of trafficking via the ER and Golgi routes could vary with the level of protein synthesis and age of the tissue. SDS PAGE 3. THE HMM GLUTENIN SUBUNITS Wheat gluten is a highly complex mixture of proteins with at least 50 individual components being separated by two-dimensional isoelectric focusing/sds PAGE of reduced total fractions (figure 1b). Furthermore, there is great variation in the component proteins present in different genotypes. This high level of polymorphism initially limited attempts to isolate and characterize individual components, but details of the structures and sequences of all of the major gluten protein types are now known (see Shewry et al. 1999). However, much of the work over the past 20 years has focused on one group of proteins, which are the subject of the remainder of this article. These are the HMM subunits of wheat glutenin (also called the HMW subunits). Bread wheat is a hexaploid species with three genomes (called A, B and D) derived from related wild grass species. Single loci encoding HMM subunits are present on the long arms of the group 1 chromosomes (1A, 1B, 1D), each locus comprising two genes encoding subunits that differ in their properties and are called x-type and y-type subunits (Payne 1987). Although bread wheats could theoretically contain six HMM subunits (1Ax, 1Ay, 1Bx, 1By, 1Dx, 1Dy), the silencing of specific genes results in the presence of only three (1Bx, 1Dx, 1Dy) to five (1Ax, 1Bx, 1By, 1Dx, 1Dy) subunits (Payne et al. 1987). The HMM subunits have been reported to account, on average, for about 12% of the total grain protein, corresponding to 1 1.7% of the flour dry weight (Seilmeier et al. 1991; Halford et al. 1992; Nicolas 1997). However, variation in the amount of HMM subunits (associated with the differences in gene silencing discussed above) and in the properties of expressed subunits have been reported to account for between 45 and 70% of the variation in breadmaking performance within European wheats (Branlard & Dardevet 1985; Payne et al. 1987, 1988). These correlative studies are supported by the development and analysis of near-isogenic lines that differ only in their HMM subunit composition. Analyses of such lines have confirmed that the subunits are largely responsible for determining dough viscoelasticity and that specific
3 Wheat gluten proteins P. R. Shewry and others 135 SH SH SH SH SH deleted in x-type SH (1Dx5 only) SH (1By- and 1Dy-type only) SH N-terminal domain residues 3 cysteine (x-type) 5 cysteine (y-type) repetitive domain residues comprises hexapeptides nonapeptides and tripeptides (x-type only) 0/1 cysteine C-terminal domain 42 residues 1 cysteine Figure 2. Schematic summary of the sequences of x-type and y-type HMM subunits. allelic subunit pairs are associated with either high or low dough strength (Popineau et al. 1994). A number of genes encoding HMM subunits have been isolated from bread wheat (see Shewry et al. 1992; Reddy & Appels 1993) and from related wheat species and wild relatives (Mackie et al. 1996; Wan et al. 2001). These show that the HMM subunits have conserved amino-acid sequences, comprising three distinct parts or domains (figure 2). The central domains of the proteins consist of repeated peptides, based on two or three short peptide motifs. They vary in length from about 420 to 700 residues and account for between 74 and 84% of the whole protein. These domains are flanked by short non-repetitive domains, which vary in length from 81 to 104 residues at the N-terminus but always comprise 42 residues at the C-terminus. 4. SEQUENCES OF THE REPETITIVE DOMAINS The x-type and y-type subunits have essentially similar repeat structures, comprising mainly nonapeptide and hexapeptide motifs. Also, whereas tandem blocks of hexapeptides may be present, the nonapeptides are always interspersed with hexapeptides. Consequently, it is convenient to consider them as forming a 15 amino-acid motif. The x-type subunits also differ from the y-type in having additional tripeptide motifs, which also only occur in tandem with hexapeptides, forming a second nonapeptide motif. Figure 3 shows the sequences of the repetitive domains of typical x-type and y-type subunits (1Dx5 and 1Dy10, respectively) arranged to show their repeated block structure. The repeat motifs are rich in glutamine, proline and glycine, which together account for over 70% of the total amino-acid residues. No major differences are apparent between the homeoallelic proteins of bread wheat (A, B, D) or related genomes present in other wheat species or wild relatives (A, C and D), so combined data for five x-type and seven y-type subunits are presented in table 1. Comparison of the patterns of amino-acid substitutions shows that some positions of the motifs appear to be more highly conserved than others. In particular, glutamine tends to be more highly conserved at specific positions than other consensus amino acids: at positions 3, 5 and 6 of the hexapeptide, 8 and 9 of the nonapeptide and 2 and 3 of the tripeptide. This may relate to the role of glutamine residues in stabilizing the structures and interactions of the subunits. Similarly, serine is conserved at position 6 of the nonapeptides. In contrast, positions 1 and 4 of the hexapeptide are poorly conserved, as is position 7 of the nonapeptide. Some differences are also observed between the x-type and y-type subunits. Thus, replacement of Pro with Ser at position 1 of the hexapeptides is more common in x- type subunits, as is replacement of Gln with Pro at position 6. However, the latter only occurs in hexapeptides within a 15 residue (6 + 9) motif, rather than in the tandemly-arranged hexapeptides. Similarly, replacement of Tyr with His at position 2 and Thr with Ala at position 5 of the nonapeptides are more common in y-type subunits and these two substitutions usually occur together, giving the two consensus motifs GYYPTSLQQ and GHY- PASLQQ compared with GYYPTSPQQ for x-type subunits. There is no evidence that amino-acid substitution leads to replacement with similar amino-acid residues (i.e. conservative substitutions). Instead, analysis of codons indicates that most replacements are due to single nucleotide changes, with substitutions resulting from double nucleotide changes occurring more rarely. For example, proline (CCA) occurs at position 1 in 55% of x-type hexapeptides, with single nucleotide changes leading to the occurrence of leucine (CTA, 12%) and serine (TCA, 30%) and two nucleotide changes to isoleucine (ATA, 3%). The failure to detect any appreciable differences between the consensus motifs and degree of conservation of the repetitive sequences present in the HMM subunits of cultivated and wild species (Wan et al. 2001) indicates that selection by plant breeders for dough strength, which has been carried out systematically for the last century and perhaps unconsciously over the year life of bread wheat, has had little or no impact on the sequences (and hence structure) of the subunits. However, it is possible that the differences in degree of conservation within the motifs and the precise amino-acid residues that are present as substitutions at different positions within the motifs may relate to their role in determining the structure adopted by the domain.
4 136 P. R. Shewry and others Wheat gluten proteins Cysteine residues occur only rarely in the repetitive sequences, with single cysteine residues present towards the C-terminal end of the repetitive domains (at position 73) of 1By and 1Dy subunits only. In addition, subunit 1Dx5 differs from all other subunits whose sequences are known in that a single additional cysteine is present at position 8 relative to the N-terminal end of the domain. 5. STRUCTURE OF THE HMM SUBUNIT REPETITIVE DOMAIN Although several workers have attempted to determine the structure adopted by the HMM subunit repeats by X- ray crystallography of whole subunits or repetitive peptides, the crystals produced have failed to give clear diffraction patterns. Similarly, analysis of synthetic peptides based on the repetitive sequence motifs has not yet led to the determination of three-dimensional structures. Consequently, our current view of HMM subunit structure comes from a range of indirect studies. Early hydrodynamic studies of subunit 1Bx20 purified from pasta wheat indicated that it had an extended rodshaped conformation in solution, the dimensions ranging from ca to Å depending on the solvent (Field et al. 1987). Detailed spectroscopic studies of whole subunits, of recombinant repetitive peptides and of linear and circular synthetic peptides (Tatham et al. 1985; Field et al. 1987; van Dijk et al. 1997a,b; Gilbert et al. 2000) have also been reported. The results are consistent with the repetitive sequences forming β-reverse turns which may be in equilibrium with poly-l-proline II structure, the latter predominating at low temperature (Gilbert et al. 2000). It has also been proposed that the β-turns are organized to give a regular spiral structure (termed a β- spiral) similar to that demonstrated for a synthetic polypentapeptide based on a repeat motif of elastin (Urry 1988). Molecular modelling can be used to generate such spiral structures (figure 4) whose dimensions (diameter, pitch and length) are consistent with those determined by viscometric analysis and revealed by STM of purified proteins in the hydrated solid state (Miles et al. 1991). However, Kasarda et al. (1994) have proposed that an alternative type of spiral structure is formed, based on γ- turns rather than β-turns. Figure 3. Amino-acid sequences of the repetitive domains of typical x-type (1Dx5,(a)) and y-type (1Dy10,(b)) HMM subunits arranged to show their repeat unit structures. 6. SEQUENCES AND STRUCTURES OF THE NON-REPETITIVE DOMAINS The N-terminal domains vary in length, being residues in the x-type subunits and 104 residues in the y-type. This difference results from a deletion in the x- type subunits compared with the y-type, which involves the loss of two cysteine residues. Consequently, the N- termini of the x-type subunits usually contain three cysteine residues and those of the y-type subunits five. Structure prediction and molecular modelling studies indicate that this domain is globular with one or more α-helices (Tatham et al. 1984, 1985; Van Dijk et al. 1998; Köhler et al. 1997). The C-terminal domains of all of the subunits comprise 42 residues with single cysteine residues at position 13 with respect to the C-terminus. Structure prediction indicates that this domain may be α-helical (Tatham et al.
5 Wheat gluten proteins P. R. Shewry and others 137 Table 1. Frequency of occurrence of different amino acid residues in each position of: (a) The 347 hexapeptide, 103 nonapeptide and 81 tripeptide repeat motifs of x-type HMW subunits 1Ax1, 1Bx7 and 1Dx5 (T. aestivum); 1Ax (T. timopheevi); 1Dx (A. cylindrica). (b) The 339 hexapeptide and 123 nonapeptide repeat motifs of y-type HMW subunits 1Ay (not expressed), 1By 9 and 1Dy10 (T. aestivum); 1Ay (T. timopheevi); 1Cy and 1Dy (A. cylindrica); 1Dy (T. tauschii). (Percentages may not add up to 100 because of rounding. Residues present at less than 1% are either included as other if together they add up to 1%, or are not shown.) hexapeptides (%) tripeptides (%) nonapeptides (%) (a) Pro 62 Gly 84 Gln 99 Gly 75 Gln 94 Gln 80 Gly 89 Gln 99 Gln 99 Gly 84 Tyr 98 Tyr 97 Pro 90 Thr 96 Ser 100 Pro 70 Gln 88 Gln 94 Ser 26 Ala 7 Other 1 Trp 9 Leu 3 Pro 15 Asp 5 Arg 1 Arg 1 Arg 6 His 2 Asp 2 Leu 8 Ile 4 Ser 13 Leu 8 Leu 4 Leu 10 Glu 4 Leu 7 Other 3 Ser 2 Ala 2 Glu 3 Phe 1 Ser 2 Leu 11 Trp 3 Glu 2 Ile 1 Arg 3 Glu 4 Arg 1 Arg 2 Trp 3 Ala 2 Arg 1 Other 2 Thr 2 Arg 2 Leu 1 His 1 Val 2 Glu 2 Ala 1 Other 2 Ala 1 2 Other 1 Lys 1 Arg 1 (b) Pro 65 Gly 92 Gln 96 Gly 76 Gln 94 Gln 94 Gly 96 Tyr 54 Tyr 85 Pro 91 Thr 60 Ser 97 leu 54 Gln 97 Gln 90 Ser 12 Glu 6 Lys 4 Glu 7 His 2 Glu 2 Trp 2 His 41 Cys 4 Leu 5 Ala 37 Tyr 2 Pro 21 His 3 His 7 Leu 10 Lys 2 Trp 7 Lys 2 His 2 Arg 1 Gln 5 Asp 2 Arg 2 Ser 2 Phe 1 Gln 19 Glu 2 Ile 7 Other 1 Arg 4 Other 1 2 Tyr 1 His 2 Ser 1 Ile 1 Val 4 Stop 1 Thr 4 Ala 2 Ile 2 Thr 1 Gly 2 Gln 1 Val 2 Phe 2 Ser 2 Other 1 Lys 1 Arg 1 Ala 1 Other 2 Asn 1 Glu 1
6 138 P. R. Shewry and others Wheat gluten proteins Figure 4. Molecular model developed for a β-spiral structure based on the amino-acid sequence of a repetitive domain of a HMM subunit. The backbone structure only is shown (D. J. Osguthorpe, O. Parchment, P. R. Shewry & A. S. Tatham, unpublished results). 1984) and NMR spectroscopy of a synthetic peptide dissolved in 40% (v/v) aqueous trifluoroethanol (a structure-inducing solvent) allowed a low-resolution structure containing two α-helices to be determined (Bekkers et al. 1996). 7. HMM SUBUNIT STRUCTURE AND GLUTEN ELASTICITY The HMM subunits are only present in glutenin polymers, particularly in high M r polymers, the amounts of which are positively correlated with dough strength (Field et al. 1983). This provides support for the genetic evidence (see 3) that the HMM subunits are the major determinants of dough and gluten elasticity. Two features of HMM subunit structure may be relevant to their role in glutenin elastomers: the number and distribution of disulphide bonds and the properties and interactions of the repetitive domains. Direct sequence analysis of disulphide-linked peptides released by enzymic digestion of glutenin or gluten fractions has revealed a number of inter- and intrachain disulphide bonds involving HM W subunits (Köhler et al. 1991, 1993, 1994; Tao et al. 1992; Keck et al. 1995). These are summarized diagrammatically in figure 5 and include one interchain disulphide bond within the N- terminal domain of an x-type subunit, two parallel disulphide bonds between the N-termini of y-type subunits, an interchain bond between a y-type subunit and a LMM glutenin subunit and a bond linking y-type and x-type subunits in a head-to-tail fashion. The latter is consistent with the results obtained by partial reduction of glutenin, which leads to the release of dimers comprising x-type + y-type subunits (Lawrence & Payne 1983; Tao et al. 1992). Such dimers have therefore been proposed to form the building blocks of glutenin (Graveland et al. 1985). However, our knowledge of the detailed disulphide structure of glutenin is not sufficiently complete to allow us to relate disulphide distribution to biomechanical properties. Although it is now widely accepted that disulphidelinked glutenin chains provide an elastic backbone to gluten, evidence from spectroscopic studies (using NMR and FTIR spectroscopy) of HMM subunits and of model peptides based on the repeat motifs suggests that non-covalent hydrogen bonding between glutenin subunits and polymers may also be important (Belton et al. 1994, 1995, 1998; Wellner et al. 1996; Gilbert et al. 2000). These studies have shown that the dry proteins are disordered with little regular structure, but that their mobility increases and β-sheet structures form on hydration. Further changes occur if hydration continues, with a further increase in protein mobility and the formation of turn-like structures at the expense of β-sheet. These observations led to the development of a loop and train model (Belton 1999), which is summarized in figure 6. This proposes that the low hydration state has many protein protein interactions, via hydrogen bonding of glutamine residues in the β-spiral structures. As the hydration level increases the system is platicized, allowing the orientation of the β-turns in adjacent β-spirals to form structures that resemble an interchain β-sheet. Further hydration leads to the breaking of some of the interchain hydrogen bonds in favour of hydrogen bonds between glutamine and water, which then leads to the formation of loop regions. However, it does not result in the complete replacement of interchain hydrogen bonds, and hence solution of the protein, as the number of glutamine residues is high and the statistical likelihood of all the interchain bonds breaking simultaneously is therefore low. The result is an equilibrium between hydrated loop regions and hydrogen-bonded chain regions, with the ratio between these being dependent on the hydration state. The equilibrium between loops and trains may also contribute to the elasticity of glutenin, as an extension of the dough will result in stretching of the loops and unzipping of the trains. The resulting formation of extended chains may be a mechanism by which elastic energy is stored in the dough, thus providing an explanation for the increased resistance to extension that occurs during dough mixing. The formation of interchain hydrogen bonds between glutamine residues may also account for the observations that the esterification of glutamine residues results in decreased resistance to extension, while mixing in the presence of deuterium oxide (D 2 O) rather than water results in increased resistance (Beckwith et al. 1963; Mita & Matsumoto 1981; Bushuk 1998). 8. MANIPULATION OF HMM SUBUNIT COMPOSITION IN TRANSGENIC WHEAT The major aim of determining the structures of the HMM subunits and their role in gluten and dough elasticity is to facilitate the improvement of the end use
7 Wheat gluten proteins P. R. Shewry and others 139 LMW y-type LMW y-type x-type LMW y-type y-type x-type 1Dx5 LMW x-type HMW? N-terminal domain C-terminal domain repetitive domain disulphide bonds LMW subunits Figure 5. Schematic model of the structure of HMM subunit polymers, based on mapped disulphide bonds (Köhler et al. 1991, 1993, 1994; Tao et al. 1992; Keck et al. 1995) Figure 6. Model for the effect of hydration on the loop to train ratio of HMM subunits. (a) Low hydration, disordered, close interactions; (b) intermediate hydration, low loop to train ratio; (c) high hydration, high loop to train ratio. properties of wheat. Substantial improvement in the processing performance of wheat has already been achieved by a combination of classical plant breeding and optimization of the agronomic and processing conditions. However, it is unlikely that these approaches will be sufficient in the long term and genetic engineering therefore provides an important additional approach. We are, therefore, using genetic engineering of wheat in order to further study the role of the HMM subunits in determining processing properties and to define strategies for the production of improved germplasm for incorporation into plant breeding programmes. Most of our work, to date, has focused on transformation of two model lines of wheat with two different HMM subunit genes. The model lines form part of a near isogenic series, which have been produced by crossing lines differing in their expression of HMM subunit genes. Thus, line L88-31 expresses only two HMM subunit genes (encoding subunits 1Bx17 and 1By18), while L88-6 also expresses genes encoding subunits 1Ax, 1Dx5 and 1Dy10 (Lawrence et al. 1988). The two genes used for transformation encode subunits 1Ax1 and 1Dx5, the latter always occurring as part of an allelic pair with subunit 1Dy10. The three transgenic lines that have been studied in detail express the 1Ax1 subunit in L88-31 at a level of about 5.7% of the total protein (compared with 0% in the control line) and the 1Dx5 subunit in L88-31 and L88-6 at 8.7% (compared with 0%) and 17% (compared with 4.2%) of the total protein, respectively (Barro et al. 1997; Popineau et al. 2001). The effects of the transgenes on dough strength were determined using a Mixograph. This measures the energy input during the mixing of dough and is routinely used for quality testing in a number of countries. When dough is mixed the resistance increases up to a certain level, after which it decreases. The increase in resistance may result from limited exchange of disulphide bonds (see 2) and formation of the most stable patterns of hydrogen bonding (i.e. to form extensive train regions). In contrast, the subsequent decrease in resistance is thought to result from disruption of these interactions by overmixing. Consequently, beneficial effects of the transgenes on dough strength and stability should be observed as increases in the PR (i.e. the maximum resistance that is observed) and the MT (i.e. the time taken to mix to PR) and a decrease in RBD (i.e. the rate of decrease in the resistance on overmixing beyond PR). The results obtained with expression of the two transgenes in the L88-31 background are summarized in figure 7 (Popineau et al. 2001). The control line has low dough strength, which is consistent with the expression of only two endogenous HMM subunit genes, and the expression of the 1Ax1 transgene results in substantial increases in PR and MT. In contrast, expression of the 1Dx5 transgene in the same line was clearly detrimental to the mixing properties. An even more extreme effect was observed
8 140 P. R. Shewry and others Wheat gluten proteins (a) 80 (b) (i) (ii) (iii) (iv) (v) torque (%) torque (%) torque (%) 80 (c) (e) torque (%) torque (%) 80 (d) (f) time (s) time (s) Figure 7. Analysis of the mixing properties of transgenic wheats expressing additional HMM subunits using the 2g Mixograph. (a) SDS PAGE of the HMM subunits from (i ), control line L88-31 (comigrating subunits 1Bx17 + 1By18); (ii), L88-31 expressing the 1Ax1 transgene; (iii), L88-31 expressing the 1Dx5 transgene; (iv), control line L88-6 (subunits 1Ax1, 1Dx5 + 1Dy10, 1Bx17 + 1By18); (v), L88-6 expressing the 1Dx5 transgene. (b f ) Mixographs of (b), L88-31; (c), L88-31 expressing the 1Ax1 transgene; (d), L88-31 expressing the 1Dx5 transgene; (e), L88-6; ( f ), L88-6 expressing the 1Dx5 transgene. The resistance is given as torque (%) and the MT in seconds (s). Taken from Popineau et al. (2001), with permission. when the subunit 1Dx5 transgene was expressed in the L88-6 line which had much stronger mixing properties (figure 7f ). In fact, both lines expressing the 1Dx5 transgene failed to absorb water and form a normal dough in the mixing bowl. Rheological studies were also carried out on gluten fractions from the transgenic lines, showing that the expression of subunit 1Dx5 resulted in large increases in elasticity (measured as the storage and loss moduli, G and G, and the viscoelastic plateau, Gn ) while only a small increase was associated with expression of subunit 1Ax1. In fact, the effect of subunit 1Dx5 was similar to that previously observed when gluten was modified by treatment with transglutaminase to introduce interchain lysyl glutamyl cross-links (Popineau et al. 2001). The expression of the subunit 1Dx5 transgene was also associated with an increase in the amounts of glutenin subunits that were only extracted from flour by sonication with detergent (2% sodium dodecylsulphate) in the presence of reducing agent (1% dithiothreitol) from 2 3% of the total flour proteins in the control lines to over 18% in the L88-31 transgenic line and almost 30% in the L88-6 transgenic line. These subunits can be assumed to be present in insoluble glutenin polymers. In contrast, expression of the 1Ax1 transgene was associated with a modest increase in the amount of subunits present in polymers that were extracted by sonication in the absence of reducing agent, but had no effect on the amount of subunits present in insoluble polymers. These results suggest that the proteins encoded by the two transgenes had fundamentally different effects on the structure of the glutenin polymers in the two lines, with the 1Dx5 protein leading to the formation of highly crosslinked polymers that resulted in high gluten strength, unusual hydration behaviour and failure to form a homogeneous network during mixing. In contrast, the expression of subunit 1Ax1 resulted in similar effects on gluten composition and properties to those observed when comparing near-isogenic lines differing in HMM subunit composition. As discussed in 4, the 1Dx5 subunit protein differs from other characterized subunits in the presence of an additional cysteine residue within the repetitive domain and this may be responsible for the formation of highly
9 Wheat gluten proteins P. R. Shewry and others 141 cross-linked polymers in the transgenic lines. However, it must also be borne in mind that, in non-transgenic wheat, subunit 1Dx5 is always found together with 1Dy10 and that dimers of these subunits are released by partial reduction of glutenin. Consequently, a precise molar balance of these two subunits may be required to give a normal glutenin polymer structure. These results demonstrate, therefore, that transformation of bread wheat with different HMW subunit genes may have fundamentally different effects on gluten structure and properties, which may relate to the expression levels, structures and interactions of the individual proteins. I. A. C. R. and I. F. R. receive grant-aided support from the Biotechnology and Biological Sciences Research Council (BBSRC) of the United Kingdom. REFERENCES Barro, F., Rooke, L., Békés, F., Gras, P., Tatham, A. S., Fido, R. J., Lazzeri, P., Shewry, P. R. & Barcelo, P Transformation of wheat with HMW subunit genes results in improved functional properties. Nature Biotechnol. 15, Beckwith, A. C., Wall, J. S. & Dimmler, R.J Amide groups as interaction sites in wheat gluten proteins: effects of amide ester conversion. Arch. Biochim. Biophys. 103, Bekkers, A. C., Van Dijk, A., de Boef, E., Van Swieten, E., Robillard, G. & Hamer, R. J HMW glutenins: structure function relationships step by step. In Gluten 96 Proc. 6th Int. Wheat Gluten Workshop, Sydney, September 1996 pp North Melbourne, Australia: Royal Australian Chemical Institute. Belton, P. S On the elasticity of wheat gluten. J. Cereal Sci. 29, Belton, P. S., Gil, A. M. & Tatham, A. S H NMR relaxation times studies of the hydration of the barley protein C- hordein. J. Chem. Soc. Farad. Trans. 90, Belton, P. S., Colquhoun, I. J., Field, J. M., Grant, A., Shewry, P. R., Tatham, A. S. & Wellner, N FTIR and NMR studies on the hydration of a high M r subunit of glutenin. Int. J. Biol. Macromol. 17, 74. Belton, P. S., Gil, A. M., Grant, A., Alberti, E. & Tatham, A. S Proton and carbon NMR measurements of the effects of hydration on the wheat protein omega gliadin. Spectrochim. Acta A 54, Branlard, G. & Dardevet, D Diversity of grain protein and bread wheat quality. II. Correlation between high molecular weight subunits of glutenin and flour quality characteristics. J. Cereal Sci. 3, Bushuk, W Interactions in wheat doughs. In Interactions, the keys to cereal quality (ed. R. J. Hamer & R. C. Hoseney), pp St Paul, MN: American Association of Cereal Chemists. Field, J. M., Shewry, P. R. & Miflin, B. J Solubilization and characterization of wheat gluten proteins; correlations between the amount of aggregated proteins and baking quality. J. Sci. Food Agric. 34, Field, J. M., Tatham, A. S. & Shewry, P. R The structure of a high M r subunit of durum wheat (T. durum) gluten. Biochem. J. 247, Galili, G The prolamin storage proteins of wheat and its relatives. In Cellular and molecular biology of plant seed development (ed. B. A. Larkins & I. K. Vasil), pp Dordrecht, The Netherlands: Kluwer. Gilbert, S. M., Wellner, N., Belton, P. S., Greenfield, J. A., Siligardi, G., Shewry, P. R. & Tatham, A. S Expression and characterisation of a highly repetitive peptide derived from a wheat seed storage protein. Biochim. Biophys. Acta 1479, Graveland, A., Bosveld, P., Lichtendonk, W. J., Marseille, J. P., Moonen, J. H. E. & Scheepstra, A A model for the molecular structure of the glutenins from wheat flour. J. Cereal Sci. 3, Halford, N. G., Field, J. M., Blair, H., Urwin, P., Moore, K., Robert, L., Thompson, R., Flavell, R. B., Tatham, A. S. & Shewry, P. R Analysis of HMW glutenin subunits encoded by chromosome 1A of bread wheat (Triticum aestivum L.) indicates quantitative effects on grain quality. Theor. Appl. Genet. 83, Kasarda, D. D., King, G. & Kumosinski, T. F Comparison of spiral structures in wheat high-molecular-weight glutenin subunits and elastin by molecular modeling. In Molecular modeling: from virtual tools to real problems. American Chemical Society Symp. series no. 576 (ed. T. F. Kumosinski & M. N. Liebman), pp Washington, DC: American Chemical Society. Keck, B., Köhler, P. & Wieser, H Disulphide bonds in wheat gluten: cystine peptides derived from gluten proteins following peptic and thermolytic digestion. Z. Lebensm. Unters. Forsch. 200, Köhler, P., Belitz, H.-D. & Wieser, H Disulphide bonds in wheat gluten: isolation of a cysteine peptide from glutenin. Z. Lebensm. Unters. Forsch. 192, Köhler, P., Belitz, H.-D. & Wieser, H Disulphide bonds in wheat gluten: further cysteine peptides from high molecular weight (HMW) and low molecular weight (LMW) subunits of glutenin and from γ-gliadins. Z. Lebensm. Unters. Forsch. 196, Köhler, P., Keck, B., Müller, S. & Wieser, H Disulphide bonds in wheat gluten. In Wheat kernel proteins, molecular and functional aspects, pp Viterbo, Italy: University of Tuscia. Köhler, P., Keck-Gassenmeier, B., Wieser, H. & Kasarda, D. D Molecular modelling of the N-terminal regions of high molecular weight glutenin subunits 7 and 5 in relation to intramolecular disulphide bond formation. Cereal Chem. 74, Lawrence, G. J. & Payne, P. I Detection by gel electrophoresis of oligomers formed by the association of highmolecular-weight glutenin protein subunits of wheat endosperm. J. Exp. Bot. 34, Lawrence, G. J., MacRitchie, F. & Wrigley, C. W Dough and baking quality of wheat lines deficient in glutenin subunits controlled by the Glu-A1, Glu-B1 and Glu-D1 loci. J. Cereal Sci. 7, Mackie, A. M., Sharp, P. J. & Lagudah, E. S The nucleotide and derived amino acid sequence of a HMW glutenin gene from Triticum tauschii and comparison with those from the D genome of bread wheat. J. Cereal Sci. 24, Mecham, D. K. & Knapp, C The sulphydryl contents of doughs mixing under nitrogen. Cereal Chem. 43, 226. Miles, M. J., Carr, H. J., McMaster, T., I Anson, K. J., Belton, P. W., Morris, V. J., Field, J. M., Shewry, P. R. & Tatham, A. S Scanning tunnelling microscopy of a wheat gluten protein reveals details of an unusual supersecondary structure. J. Mol. Biol. 88, Mita, T. & Matsumoto, H Flow properties of aqueous gluten and gluten methyl ester dispersions. Cereal Chem. 58, Napier, J. A., Richard, G., Turner, M. F. P. & Shewry, P. R Trafficking of wheat gluten proteins in transgenic tobacco plants: γ-gliadin does not contain an endoplasmic reticulum-retention signal. Planta 203,
10 142 P. R. Shewry and others Wheat gluten proteins Nicolas, Y Les prolamines de blé: extraction exhaustive et développement de dosages chromatographiques en phase inverse et de dosages immunochimiques à l aide d anticorps anti-peptide. Thesis, University of Nantes, France. Osborne, T. B The vegetable proteins, 2nd edn. London: Longmans, Green and Co. Payne, P. I., Nightingale, M. A., Krattiger, A. F. & Holt, L. M The relationship between HMW glutenin subunit composition and the breadmaking quality of British grown wheat varieties. J. Sci. Food Agric. 40, Payne, P. I., Holt, L. M., Krattiger, A. F. & Carillo, J. M Relationship between seed quality characteristics and HMW glutenin composition determined using wheats grown in Spain. J. Cereal Sci. 7, Popineau, Y., Cornec, M., Lefebvre, J. & Marchylo, B Influence of high M r glutenin subunits on glutenin polymers and rheological properties of gluten and gluten subfractions of near-isogenic lines of wheat Sicco. J. Cereal Sci. 19, Popineau, Y., Deshayes, G., Lefebvre, J., Fido, R., Tatham, A. S. & Shewry, P. R Prolamin aggregation, gluten viscoelasticity, and mixing properties of transgenic wheat lines expressing 1Ax and 1Dx high molecular weight glutenin subunit transgenes. J. Agric. Food Chem. 49, Reddy, P. & Appels, R Analysis of a genomic DNA segment carrying the wheat high-molecular-weight (HMW) glutenin Bx17 subunit and its use as an RFLP marker. Theor. Appl. Genet. 85, Schofield, J. D Wheat proteins: structure and functionality in milling and breadmaking. In Wheat production, properties and quality (ed. W. Bushuk & V. F. Rasper), pp London: Chapman & Hall. Seilmeier, W., Belitz, H. D. & Wieser, H Separation and quantitative determination of high-molecular-weight subunits of glutenin from different wheat varieties and genetic variants of the variety Sicco. Z. Lebensm. Unters. Forsch. 192, Shewry, P. R The synthesis, processing and deposition of gluten proteins in the developing wheat grain. Cereal Foods World 44, Shewry, P. R., Tatham, A. S., Forde, J., Kreis, M. & Miflin, B. J The classification and nomenclature of wheat gluten proteins: a reassessment. J. Cereal Sci. 4, Shewry, P. R., Halford, N. G. & Tatham, A. S The high molecular weight subunits of wheat glutenin. J. Cereal Sci. 15, Shewry, P. R., Tatham, A. S., Barro, F., Barcelo, P. & Lazzeri, P Biotechnology of breadmaking: unravelling and manipulating the multi-protein gluten complex. BioTechnology 13, Shewry, P. R., Tatham, A. S. & Halford, N. G The prolamins of the Triticeae. In Seed proteins (ed. P. R. Shewry & R. Casey), pp Dordrecht, The Netherlands: Kluwer. Tao, H. P., Adalsteins, A. E. & Kasarda, D. D Intermolecular disulfide bonds link specific high-molecular-weight glutenin subunits in wheat endosperm. Biochimica Biophysica Acta 1159, Tatham, A. S., Shewry, P. R. & Miflin, B. J Wheat gluten elasticity: a similar molecular basis to elastin? FEBS Lett. 177, Tatham, A. S., Miflin, B. J. & Shewry, P. R The β-turn conformation in wheat gluten proteins: relationship to gluten elasticity. Cereal Chem. 62, Tsen, C. C. & Bushuk, W Changes in sulphydryl and disulphide contents of doughs during mixing under various conditions. Cereal Chem. 40, 399. Urry, D. W Entropic elastic processes in protein mechanisms. I. Elastic structure due to an inverse temperature transition and elasticity due to internal chain dynamics. J. Protein Chem. 7, van Dijk, A. A., de Boef, E., Bekkers, A., Wijk, L. L., Van Swieten, E., Hamer, R. J. & Robillard, G. T. 1997a Structure characterization of the central repetitive domain of high molecular weight gluten proteins. II. Characterization in solution and in the dry state. Protein Sci. 6, van Dijk, A. A., Van Wijk, L. L., Van Vliet, A., Haris, P., Van Swieten, E., Tesser, G. I. & Robillard, G. T. 1997b Structure characterization of the central repetitive domain of high molecular weight gluten proteins. I. Model studies using cyclic and linear peptides. Protein Sci. 6, van Dijk, A. A., Van Swieten, E., Kruize, I. T. & Robillard, G. T Physical characterisation of the N-terminal domain of high-molecular-weight gluten subunit Dx5 from wheat. J. Cereal Sci. 28, Wan, Y. F., Wang, D., Shewry, P. R. & Halford, N. G Isolation and characterization of five novel high molecular weight subunit genes from Triticum timopheevi and Aegilops cylindrica. Theor. Appl. Genet. (In the press.) Wellner, N., Belton, P. S. & Tatham, A. S Fourier transform IR spectroscopic study of hydration induced structure changes in the solid state of omega gliadins. Biochem. J. 319,
International Journal of Agricultural and Food Science
Available online at http://www.urpjournals.com International Journal of Agricultural and Food Science Universal Research Publications. All rights reserved ISSN 2249-8516 Original Article Influence of high
Amino Acids. Amino acids are the building blocks of proteins. All AA s have the same basic structure: Side Chain. Alpha Carbon. Carboxyl. Group.
Protein Structure Amino Acids Amino acids are the building blocks of proteins. All AA s have the same basic structure: Side Chain Alpha Carbon Amino Group Carboxyl Group Amino Acid Properties There are
Peptide bonds: resonance structure. Properties of proteins: Peptide bonds and side chains. Dihedral angles. Peptide bond. Protein physics, Lecture 5
Protein physics, Lecture 5 Peptide bonds: resonance structure Properties of proteins: Peptide bonds and side chains Proteins are linear polymers However, the peptide binds and side chains restrict conformational
Advanced Medicinal & Pharmaceutical Chemistry CHEM 5412 Dept. of Chemistry, TAMUK
Advanced Medicinal & Pharmaceutical Chemistry CHEM 5412 Dept. of Chemistry, TAMUK Dai Lu, Ph.D. [email protected] Tel: 361-221-0745 Office: RCOP, Room 307 Drug Discovery and Development Drug Molecules Medicinal
Recap. Lecture 2. Protein conformation. Proteins. 8 types of protein function 10/21/10. Proteins.. > 50% dry weight of a cell
Lecture 2 Protein conformation ecap Proteins.. > 50% dry weight of a cell ell s building blocks and molecular tools. More important than genes A large variety of functions http://www.tcd.ie/biochemistry/courses/jf_lectures.php
Protein Physics. A. V. Finkelstein & O. B. Ptitsyn LECTURE 1
Protein Physics A. V. Finkelstein & O. B. Ptitsyn LECTURE 1 PROTEINS Functions in a Cell MOLECULAR MACHINES BUILDING BLOCKS of a CELL ARMS of a CELL ENZYMES - enzymatic catalysis of biochemical reactions
IV. -Amino Acids: carboxyl and amino groups bonded to -Carbon. V. Polypeptides and Proteins
IV. -Amino Acids: carboxyl and amino groups bonded to -Carbon A. Acid/Base properties 1. carboxyl group is proton donor! weak acid 2. amino group is proton acceptor! weak base 3. At physiological ph: H
The Organic Chemistry of Amino Acids, Peptides, and Proteins
Essential rganic Chemistry Chapter 16 The rganic Chemistry of Amino Acids, Peptides, and Proteins Amino Acids a-amino carboxylic acids. The building blocks from which proteins are made. H 2 N C 2 H Note:
Pipe Cleaner Proteins. Essential question: How does the structure of proteins relate to their function in the cell?
Pipe Cleaner Proteins GPS: SB1 Students will analyze the nature of the relationships between structures and functions in living cells. Essential question: How does the structure of proteins relate to their
Part A: Amino Acids and Peptides (Is the peptide IAG the same as the peptide GAI?)
ChemActivity 46 Amino Acids, Polypeptides and Proteins 1 ChemActivity 46 Part A: Amino Acids and Peptides (Is the peptide IAG the same as the peptide GAI?) Model 1: The 20 Amino Acids at Biological p See
Shu-Ping Lin, Ph.D. E-mail: [email protected]
Amino Acids & Proteins Shu-Ping Lin, Ph.D. Institute te of Biomedical Engineering ing E-mail: [email protected] Website: http://web.nchu.edu.tw/pweb/users/splin/ edu tw/pweb/users/splin/ Date: 10.13.2010
The peptide bond is rigid and planar
Level Description Bonds Primary Sequence of amino acids in proteins Covalent (peptide bonds) Secondary Structural motifs in proteins: α- helix and β-sheet Hydrogen bonds (between NH and CO groups in backbone)
Built from 20 kinds of amino acids
Built from 20 kinds of amino acids Each Protein has a three dimensional structure. Majority of proteins are compact. Highly convoluted molecules. Proteins are folded polypeptides. There are four levels
A disaccharide is formed when a dehydration reaction joins two monosaccharides. This covalent bond is called a glycosidic linkage.
CH 5 Structure & Function of Large Molecules: Macromolecules Molecules of Life All living things are made up of four classes of large biological molecules: carbohydrates, lipids, proteins, and nucleic
Amino Acids, Peptides, Proteins
Amino Acids, Peptides, Proteins Functions of proteins: Enzymes Transport and Storage Motion, muscle contraction Hormones Mechanical support Immune protection (Antibodies) Generate and transmit nerve impulses
A. A peptide with 12 amino acids has the following amino acid composition: 2 Met, 1 Tyr, 1 Trp, 2 Glu, 1 Lys, 1 Arg, 1 Thr, 1 Asn, 1 Ile, 1 Cys
Questions- Proteins & Enzymes A. A peptide with 12 amino acids has the following amino acid composition: 2 Met, 1 Tyr, 1 Trp, 2 Glu, 1 Lys, 1 Arg, 1 Thr, 1 Asn, 1 Ile, 1 Cys Reaction of the intact peptide
18.2 Protein Structure and Function: An Overview
18.2 Protein Structure and Function: An Overview Protein: A large biological molecule made of many amino acids linked together through peptide bonds. Alpha-amino acid: Compound with an amino group bonded
Peptide Bonds: Structure
Peptide Bonds: Structure Peptide primary structure The amino acid sequence, from - to C-terminus, determines the primary structure of a peptide or protein. The amino acids are linked through amide or peptide
ISTEP+: Biology I End-of-Course Assessment Released Items and Scoring Notes
ISTEP+: Biology I End-of-Course Assessment Released Items and Scoring Notes Page 1 of 22 Introduction Indiana students enrolled in Biology I participated in the ISTEP+: Biology I Graduation Examination
Chapter 3. Protein Structure and Function
Chapter 3 Protein Structure and Function Broad functional classes So Proteins have structure and function... Fine! -Why do we care to know more???? Understanding functional architechture gives us POWER
Sickle cell anemia: Altered beta chain Single AA change (#6 Glu to Val) Consequence: Protein polymerizes Change in RBC shape ---> phenotypes
Protein Structure Polypeptide: Protein: Therefore: Example: Single chain of amino acids 1 or more polypeptide chains All polypeptides are proteins Some proteins contain >1 polypeptide Hemoglobin (O 2 binding
PROTEIN SEQUENCING. First Sequence
PROTEIN SEQUENCING First Sequence The first protein sequencing was achieved by Frederic Sanger in 1953. He determined the amino acid sequence of bovine insulin Sanger was awarded the Nobel Prize in 1958
Structure of proteins
Structure of proteins Primary structure: is amino acids sequence or the covalent structure (50-2500) amino acids M.Wt. of amino acid=110 Dalton (56 110=5610 Dalton). Single chain or more than one polypeptide
PROTEINS STRUCTURE AND FUNCTION (DR. TRAISH)
Introduction to Proteins - Proteins are abundant and functionally diverse molecules - They participate in cell regulation at all levels - They share a common structural feature: all are linear polymers
CSC 2427: Algorithms for Molecular Biology Spring 2006. Lecture 16 March 10
CSC 2427: Algorithms for Molecular Biology Spring 2006 Lecture 16 March 10 Lecturer: Michael Brudno Scribe: Jim Huang 16.1 Overview of proteins Proteins are long chains of amino acids (AA) which are produced
Replication Study Guide
Replication Study Guide This study guide is a written version of the material you have seen presented in the replication unit. Self-reproduction is a function of life that human-engineered systems have
(c) How would your answers to problem (a) change if the molecular weight of the protein was 100,000 Dalton?
Problem 1. (12 points total, 4 points each) The molecular weight of an unspecified protein, at physiological conditions, is 70,000 Dalton, as determined by sedimentation equilibrium measurements and by
Amino Acids and Proteins
Amino Acids and Proteins Proteins are composed of amino acids. There are 20 amino acids commonly found in proteins. All have: N2 C α R COO Amino acids at neutral p are dipolar ions (zwitterions) because
The chemistry of insulin
FREDERICK S ANGER The chemistry of insulin Nobel Lecture, December 11, 1958 It is great pleasure and privilege for me to give an account of my work on protein structure and I am deeply sensitive of the
Structure and Function of DNA
Structure and Function of DNA DNA and RNA Structure DNA and RNA are nucleic acids. They consist of chemical units called nucleotides. The nucleotides are joined by a sugar-phosphate backbone. The four
Expression and Purification of Recombinant Protein in bacteria and Yeast. Presented By: Puspa pandey, Mohit sachdeva & Ming yu
Expression and Purification of Recombinant Protein in bacteria and Yeast Presented By: Puspa pandey, Mohit sachdeva & Ming yu DNA Vectors Molecular carriers which carry fragments of DNA into host cell.
REDUCTION AND CARBOXYMETHYLATION OF SOME OF THE GLIADIN WHEAT PROTEINS
Pak. J. Bot., 43(1): 459-465, 2011. REDUCTION AND CARBOXYMETHYLATION OF SOME OF THE GLIADIN WHEAT PROTEINS AHMAD SAEED KHAN 1* AND IHSAN ILAHI 2 1 Department of Chemistry 1 and 2 Department of Biological
Translation Study Guide
Translation Study Guide This study guide is a written version of the material you have seen presented in the replication unit. In translation, the cell uses the genetic information contained in mrna to
H H N - C - C 2 R. Three possible forms (not counting R group) depending on ph
Amino acids - 0 common amino acids there are others found naturally but much less frequently - Common structure for amino acid - C, -N, and functional groups all attached to the alpha carbon N - C - C
Outline. Market & Technology Trends. LifeTein Technology Portfolio. LifeTein Services
1 Outline Market & Technology Trends LifeTein Technology Portfolio LifeTein Services 2 Synthetic Therapeutic Peptides More than 60 synthetic therapeutic peptides under 50 amino acids in size have reached
Genetics Lecture Notes 7.03 2005. Lectures 1 2
Genetics Lecture Notes 7.03 2005 Lectures 1 2 Lecture 1 We will begin this course with the question: What is a gene? This question will take us four lectures to answer because there are actually several
CHAPTER 15: ANSWERS TO SELECTED PROBLEMS
CHAPTER 15: ANSWERS T SELECTED PRBLEMS SAMPLE PRBLEMS ( Try it yourself ) 15.1 ur bodies can carry out the second reaction, because it requires less energy than we get from breaking down a molecule of
BOC334 (Proteomics) Practical 1. Calculating the charge of proteins
BC334 (Proteomics) Practical 1 Calculating the charge of proteins Aliphatic amino acids (VAGLIP) N H 2 H Glycine, Gly, G no charge Hydrophobicity = 0.67 MW 57Da pk a CH = 2.35 pk a NH 2 = 9.6 pi=5.97 CH
Amino Acids as Acids, Bases and Buffers:
Amino Acids as Acids, Bases and Buffers: - Amino acids are weak acids - All have at least 2 titratable protons (shown below as fully protonated species) and therefore have 2 pka s o α-carboxyl (-COOH)
Chapter 12 - Proteins
Roles of Biomolecules Carbohydrates Lipids Proteins 1) Catalytic 2) Transport 3) Regulatory 4) Structural 5) Contractile 6) Protective 7) Storage Nucleic Acids 12.1 -Amino Acids Chapter 12 - Proteins Amino
USP's Therapeutic Peptides Expert Panel discusses manufacturing processes and impurity control for synthetic peptide APIs.
Control Strategies for Synthetic Therapeutic Peptide APIs Part III: Manufacturing Process Considerations By Brian Gregg,Aleksander Swietlow,Anita Y. Szajek,Harold Rode,Michael Verlander,Ivo Eggen USP's
This class deals with the fundamental structural features of proteins, which one can understand from the structure of amino acids, and how they are
This class deals with the fundamental structural features of proteins, which one can understand from the structure of amino acids, and how they are put together. 1 A more detailed view of a single protein
Ionization of amino acids
Amino Acids 20 common amino acids there are others found naturally but much less frequently Common structure for amino acid COOH, -NH 2, H and R functional groups all attached to the a carbon Ionization
Paper: 6 Chemistry 2.130 University I Chemistry: Models Page: 2 of 7. 4. Which of the following weak acids would make the best buffer at ph = 5.0?
Paper: 6 Chemistry 2.130 University I Chemistry: Models Page: 2 of 7 4. Which of the following weak acids would make the best buffer at ph = 5.0? A) Acetic acid (Ka = 1.74 x 10-5 ) B) H 2 PO - 4 (Ka =
AMINO ACIDS & PEPTIDE BONDS STRUCTURE, CLASSIFICATION & METABOLISM
AMINO ACIDS & PEPTIDE BONDS STRUCTURE, CLASSIFICATION & METABOLISM OBJECTIVES At the end of this session the student should be able to, recognize the structures of the protein amino acid and state their
Ms. Campbell Protein Synthesis Practice Questions Regents L.E.
Name Student # Ms. Campbell Protein Synthesis Practice Questions Regents L.E. 1. A sequence of three nitrogenous bases in a messenger-rna molecule is known as a 1) codon 2) gene 3) polypeptide 4) nucleotide
RNA & Protein Synthesis
RNA & Protein Synthesis Genes send messages to cellular machinery RNA Plays a major role in process Process has three phases (Genetic) Transcription (Genetic) Translation Protein Synthesis RNA Synthesis
ENZYMES. Serine Proteases Chymotrypsin, Trypsin, Elastase, Subtisisin. Principle of Enzyme Catalysis
ENZYMES Serine Proteases Chymotrypsin, Trypsin, Elastase, Subtisisin Principle of Enzyme Catalysis Linus Pauling (1946) formulated the first basic principle of enzyme catalysis Enzyme increase the rate
http://faculty.sau.edu.sa/h.alshehri
http://faculty.sau.edu.sa/h.alshehri Definition: Proteins are macromolecules with a backbone formed by polymerization of amino acids. Proteins carry out a number of functions in living organisms: - They
Lecture 8. Protein Trafficking/Targeting. Protein targeting is necessary for proteins that are destined to work outside the cytoplasm.
Protein Trafficking/Targeting (8.1) Lecture 8 Protein Trafficking/Targeting Protein targeting is necessary for proteins that are destined to work outside the cytoplasm. Protein targeting is more complex
Chapter 3: Biological Molecules. 1. Carbohydrates 2. Lipids 3. Proteins 4. Nucleic Acids
Chapter 3: Biological Molecules 1. Carbohydrates 2. Lipids 3. Proteins 4. Nucleic Acids Elements in Biological Molecules Biological macromolecules are made almost entirely of just 6 elements: Carbon (C)
BIOLOGICAL MEMBRANES: FUNCTIONS, STRUCTURES & TRANSPORT
BIOLOGICAL MEMBRANES: FUNCTIONS, STRUCTURES & TRANSPORT UNIVERSITY OF PNG SCHOOL OF MEDICINE AND HEALTH SCIENCES DISCIPLINE OF BIOCHEMISTRY AND MOLECULAR BIOLOGY BMLS II / B Pharm II / BDS II VJ Temple
4. Which carbohydrate would you find as part of a molecule of RNA? a. Galactose b. Deoxyribose c. Ribose d. Glucose
1. How is a polymer formed from multiple monomers? a. From the growth of the chain of carbon atoms b. By the removal of an OH group and a hydrogen atom c. By the addition of an OH group and a hydrogen
Biological Molecules
Biological Molecules I won t lie. This is probably the most boring topic you have ever done in any science. It s pretty much as simple as this: learn the material deal with it. Enjoy don t say I didn t
Overview'of'Solid-Phase'Peptide'Synthesis'(SPPS)'and'Secondary'Structure'Determination'by'FTIR'
verviewofsolid-phasepeptidesynthesis(spps)andsecondarystructuredeterminationbyftir Introduction Proteinsareubiquitousinlivingorganismsandcells,andcanserveavarietyoffunctions.Proteinscanactas enzymes,hormones,antibiotics,receptors,orserveasstructuralsupportsintissuessuchasmuscle,hair,and
European Medicines Agency
European Medicines Agency July 1996 CPMP/ICH/139/95 ICH Topic Q 5 B Quality of Biotechnological Products: Analysis of the Expression Construct in Cell Lines Used for Production of r-dna Derived Protein
Mutation. Mutation provides raw material to evolution. Different kinds of mutations have different effects
Mutation Mutation provides raw material to evolution Different kinds of mutations have different effects Mutational Processes Point mutation single nucleotide changes coding changes (missense mutations)
INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE Q5B
INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE ICH HARMONISED TRIPARTITE GUIDELINE QUALITY OF BIOTECHNOLOGICAL PRODUCTS: ANALYSIS
Chapter 26 Biomolecules: Amino Acids, Peptides, and Proteins
John E. McMurry www.cengage.com/chemistry/mcmurry Chapter 26 Biomolecules: Amino Acids, Peptides, and Proteins Proteins Amides from Amino Acids Amino acids contain a basic amino group and an acidic carboxyl
INTRODUCTION TO PROTEIN STRUCTURE
Name Class: Partner, if any: INTRODUCTION TO PROTEIN STRUCTURE PRIMARY STRUCTURE: 1. Write the complete structural formula of the tripeptide shown (frame 10). Circle and label the three sidechains which
Cytology. Living organisms are made up of cells. Either PROKARYOTIC or EUKARYOTIC cells.
CYTOLOGY Cytology Living organisms are made up of cells. Either PROKARYOTIC or EUKARYOTIC cells. A. two major cell types B. distinguished by structural organization See table on handout for differences.
Disaccharides consist of two monosaccharide monomers covalently linked by a glycosidic bond. They function in sugar transport.
1. The fundamental life processes of plants and animals depend on a variety of chemical reactions that occur in specialized areas of the organism s cells. As a basis for understanding this concept: 1.
Name Date Period. 2. When a molecule of double-stranded DNA undergoes replication, it results in
DNA, RNA, Protein Synthesis Keystone 1. During the process shown above, the two strands of one DNA molecule are unwound. Then, DNA polymerases add complementary nucleotides to each strand which results
Myoglobin and Hemoglobin
Myoglobin and Hemoglobin Myoglobin and hemoglobin are hemeproteins whose physiological importance is principally related to their ability to bind molecular oxygen. Myoglobin (Mb) The oxygen storage protein
BCOR101 Midterm II Wednesday, October 26, 2005
BCOR101 Midterm II Wednesday, October 26, 2005 Name Key Please show all of your work. 1. A donor strain is trp+, pro+, met+ and a recipient strain is trp-, pro-, met-. The donor strain is infected with
Proteins and Nucleic Acids
Proteins and Nucleic Acids Chapter 5 Macromolecules: Proteins Proteins Most structurally & functionally diverse group of biomolecules. : o Involved in almost everything o Enzymes o Structure (keratin,
1. The diagram below represents a biological process
1. The diagram below represents a biological process 5. The chart below indicates the elements contained in four different molecules and the number of atoms of each element in those molecules. Which set
PRACTICE TEST QUESTIONS
PART A: MULTIPLE CHOICE QUESTIONS PRACTICE TEST QUESTIONS DNA & PROTEIN SYNTHESIS B 1. One of the functions of DNA is to A. secrete vacuoles. B. make copies of itself. C. join amino acids to each other.
Chapter 5. The Structure and Function of Macromolecule s
Chapter 5 The Structure and Function of Macromolecule s Most Macromolecules are polymers: Polymer: (poly: many; mer: part) Large molecules consisting of many identical or similar subunits connected together.
ABSTRACT Cereal Chem. 69(5):508-515
Characterization of Low Molecular Weight Glutenin Subunits by Reversed-Phase High-Performance Liquid Chromatography, Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis, and N-Terminal Amino Acid
Academic Nucleic Acids and Protein Synthesis Test
Academic Nucleic Acids and Protein Synthesis Test Multiple Choice Identify the letter of the choice that best completes the statement or answers the question. 1. Each organism has a unique combination
Biological molecules:
Biological molecules: All are organic (based on carbon). Monomers vs. polymers: Monomers refer to the subunits that, when polymerized, make up a larger polymer. Monomers may function on their own in some
Copyright 2000-2003 Mark Brandt, Ph.D. 54
Pyruvate Oxidation Overview of pyruvate metabolism Pyruvate can be produced in a variety of ways. It is an end product of glycolysis, and can be derived from lactate taken up from the environment (or,
Combinatorial Chemistry and solid phase synthesis seminar and laboratory course
Combinatorial Chemistry and solid phase synthesis seminar and laboratory course Topic 1: Principles of combinatorial chemistry 1. Introduction: Why Combinatorial Chemistry? Until recently, a common drug
3120-1 - Page 1. Name:
Name: 1) Which series is arranged in correct order according to decreasing size of structures? A) DNA, nucleus, chromosome, nucleotide, nitrogenous base B) chromosome, nucleus, nitrogenous base, nucleotide,
Biological cell membranes
Unit 14: Cell biology. 14 2 Biological cell membranes The cell surface membrane surrounds the cell and acts as a barrier between the cell s contents and the environment. The cell membrane has multiple
2007 7.013 Problem Set 1 KEY
2007 7.013 Problem Set 1 KEY Due before 5 PM on FRIDAY, February 16, 2007. Turn answers in to the box outside of 68-120. PLEASE WRITE YOUR ANSWERS ON THIS PRINTOUT. 1. Where in a eukaryotic cell do you
Site-Directed Nucleases and Cisgenesis Maria Fedorova, Ph.D.
Site-Directed Nucleases and Cisgenesis Maria Fedorova, Ph.D. Regulatory Strategy Lead Enabling Technologies DuPont-Pioneer, USA 1 New Plant Breeding Techniques 2007 New Techniques Working Group established
Helices From Readily in Biological Structures
The α Helix and the β Sheet Are Common Folding Patterns Although the overall conformation each protein is unique, there are only two different folding patterns are present in all proteins, which are α
Rubisco; easy Purification and Immunochemical Determination
Rubisco; easy Purification and Immunochemical Determination Ulrich Groß Justus-Liebig-Universität Gießen, Institute of Plant Nutrition, Department of Tissue Culture, Südanlage 6, D-35390 Giessen e-mail:
Molecular Genetics. RNA, Transcription, & Protein Synthesis
Molecular Genetics RNA, Transcription, & Protein Synthesis Section 1 RNA AND TRANSCRIPTION Objectives Describe the primary functions of RNA Identify how RNA differs from DNA Describe the structure and
RNA and Protein Synthesis
Name lass Date RN and Protein Synthesis Information and Heredity Q: How does information fl ow from DN to RN to direct the synthesis of proteins? 13.1 What is RN? WHT I KNOW SMPLE NSWER: RN is a nucleic
Hydrogen Bonds The electrostatic nature of hydrogen bonds
Hydrogen Bonds Hydrogen bonds have played an incredibly important role in the history of structural biology. Both the structure of DNA and of protein a-helices and b-sheets were predicted based largely
AS Biology Unit 2 Key Terms and Definitions. Make sure you use these terms when answering exam questions!
AS Biology Unit 2 Key Terms and Definitions Make sure you use these terms when answering exam questions! Chapter 7 Variation 7.1 Random Sampling Sampling a population to eliminate bias e.g. grid square
2. The number of different kinds of nucleotides present in any DNA molecule is A) four B) six C) two D) three
Chem 121 Chapter 22. Nucleic Acids 1. Any given nucleotide in a nucleic acid contains A) two bases and a sugar. B) one sugar, two bases and one phosphate. C) two sugars and one phosphate. D) one sugar,
Lecture Overview. Hydrogen Bonds. Special Properties of Water Molecules. Universal Solvent. ph Scale Illustrated. special properties of water
Lecture Overview special properties of water > water as a solvent > ph molecules of the cell > properties of carbon > carbohydrates > lipids > proteins > nucleic acids Hydrogen Bonds polarity of water
CHAPTER 29 AMINO ACIDS, POLYPEPTIDES, AND PROTEINS SOLUTIONS TO REVIEW QUESTIONS
APTER 29 AMI AIDS, PLYPEPTIDES, AD PRTEIS SLUTIS T REVIEW QUESTIS 1. The designation, α, means that the amine group in common amino acids is connected to the carbon immediately adjacent to the carboxylic
Disulfide Bonds at the Hair Salon
Disulfide Bonds at the Hair Salon Three Alpha Helices Stabilized By Disulfide Bonds! In order for hair to grow 6 inches in one year, 9 1/2 turns of α helix must be produced every second!!! In some proteins,
Protein Synthesis. Page 41 Page 44 Page 47 Page 42 Page 45 Page 48 Page 43 Page 46 Page 49. Page 41. DNA RNA Protein. Vocabulary
Protein Synthesis Vocabulary Transcription Translation Translocation Chromosomal mutation Deoxyribonucleic acid Frame shift mutation Gene expression Mutation Point mutation Page 41 Page 41 Page 44 Page
Marmara Üniversitesi Fen-Edebiyat Fakültesi Kimya Bölümü / Biyokimya Anabilim Dalı
EXPERIMENT IX Marmara Üniversitesi DETERMINATION OF N-TERMINAL AMINO ACID RESIDUE OF PROTEINS BY THIN LAYER CHROMATOGRAPHY Functions of the proteins depend upon its amino acid sequence. Because amino acid
Gene mutation and molecular medicine Chapter 15
Gene mutation and molecular medicine Chapter 15 Lecture Objectives What Are Mutations? How Are DNA Molecules and Mutations Analyzed? How Do Defective Proteins Lead to Diseases? What DNA Changes Lead to
Forensic DNA Testing Terminology
Forensic DNA Testing Terminology ABI 310 Genetic Analyzer a capillary electrophoresis instrument used by forensic DNA laboratories to separate short tandem repeat (STR) loci on the basis of their size.
Carbohydrates, proteins and lipids
Carbohydrates, proteins and lipids Chapter 3 MACROMOLECULES Macromolecules: polymers with molecular weights >1,000 Functional groups THE FOUR MACROMOLECULES IN LIFE Molecules in living organisms: proteins,
1 The water molecule and hydrogen bonds in water
The Physics and Chemistry of Water 1 The water molecule and hydrogen bonds in water Stoichiometric composition H 2 O the average lifetime of a molecule is 1 ms due to proton exchange (catalysed by acids
ACID-BASE TITRATIONS: DETERMINATION OF CARBONATE BY TITRATION WITH HYDROCHLORIC ACID BACKGROUND
#3. Acid - Base Titrations 27 EXPERIMENT 3. ACID-BASE TITRATIONS: DETERMINATION OF CARBONATE BY TITRATION WITH HYDROCHLORIC ACID BACKGROUND Carbonate Equilibria In this experiment a solution of hydrochloric
Anatomy and Physiology Placement Exam 2 Practice with Answers at End!
Anatomy and Physiology Placement Exam 2 Practice with Answers at End! General Chemical Principles 1. bonds are characterized by the sharing of electrons between the participating atoms. a. hydrogen b.
Genetics Module B, Anchor 3
Genetics Module B, Anchor 3 Key Concepts: - An individual s characteristics are determines by factors that are passed from one parental generation to the next. - During gamete formation, the alleles for
Chapter 3 Molecules of Cells
Bio 100 Molecules of cells 1 Chapter 3 Molecules of Cells Compounds containing carbon are called organic compounds Molecules such as methane that are only composed of carbon and hydrogen are called hydrocarbons
Date: Student Name: Teacher Name: Jared George. Score: 1) A cell with 1% solute concentration is placed in a beaker with a 5% solute concentration.
Biology Keystone (PA Core) Quiz Homeostasis and Transport - (BIO.A.4.1.1 ) Plasma Membrane, (BIO.A.4.1.2 ) Transport Mechanisms, (BIO.A.4.1.3 ) Transport Facilitation Student Name: Teacher Name: Jared
Given these characteristics of life, which of the following objects is considered a living organism? W. X. Y. Z.
Cell Structure and Organization 1. All living things must possess certain characteristics. They are all composed of one or more cells. They can grow, reproduce, and pass their genes on to their offspring.
