Port Biological Sampling Program
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1 Port Biological Sampling Program NERO / NEFSC A joint program of: NERO / NEFSC Greg Power - Greg.Power@noaa.gov Fisheries Data Services Northeast Regional Office Gloucester, MA August 6, 2013 Susan Wigley Susan.Wigley@noaa.gov Population Dynamics Branch Northeast Fisheries Science Center Woods Hole, MA
2 Terms of Reference 5. What are the major fishery dependent data sources successes and how should they be supported? 6. What are the major fishery dependent data limitations/weaknesses and how could they be resolved? Define potential improvements and priorities for recommended improvements. U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 2
3 Program History Organizational location < 1994: NEFSC 1994 present: NERO Staffing < 1994: federal Port Agents (Co-op students, interns) : federal & contract Port Agents : contract port agents & federal PA 2011 to present: contract port samplers & federal PA U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 3
4 Program Organization Program management NERO & NEFSC Contract samplers Task order against contract for data services REMSA Inc., Hampton VA - current AIS Inc., New Bedford MA winter 2014 Federal samplers U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 4
5 Program Organization (Doc #8-Dockside Sampling Team Organization Chart) U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 5
6 Program Conduct Stratification NEFSC request list Opportunity identification Sample collection Data processing Data quality U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 6
7 Stratification Sampling regions (7) Species (37) Market categories (all landed) Gear (all fished commercially) Stock area (single- and multiple-stock species) Calendar quarter U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 7
8 NEFSC Request List (Doc. #9-FY2013 NEFSC Biosamples request (Excel file)) Developed annually by NEFSC Provided to NERO prior to start of FY BIOLOGICAL SAMPLING REQUIREMENTS SUMMARY - FY2013 Region Species Mkt Cat Gear Stock Area Oct-Dec Jan-Mar Apr-Jun Jul-Sep TOTAL MA-N AMERICAN PLAICE LRG OT 52, MA-N AMERICAN PLAICE MED OT 51,52, MA-N AMERICAN PLAICE SM OT 51,52, MA-S/CC AMERICAN PLAICE LRG OT 52,53, MA-S/CC AMERICAN PLAICE MED OT 52,53, MA-S/CC AMERICAN PLAICE SM OT 52,53, MA-N ATLANTIC COD MKT OT 52, MA-N ATLANTIC COD SCROD OT 52, MA-N ATLANTIC COD WHALE ALL 52, MA-S/CC ATLANTIC COD LRG GN 52,53, MA-S/CC ATLANTIC COD LRG LL 52, MA-S/CC ATLANTIC COD LRG OT 52, VA/MD BLACK SEA BASS JUM/LRG ALL VA/MD BLACK SEA BASS JUM/LRG OT MA-S/CC BLACK SEA BASS MED ALL 52, NY/LI BLACK SEA BASS MED ALL U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 8
9 Opportunity Identification Request list Within-quarter comparison of requested vs. collected samples Looking for samples VMS , catch reports, v-track, historical knowledge, dealer/vtr reports Within-quarter flexibility adjustments V-Track plot of single trip U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 9
10 Sample Collection Sample targeting Doc. #5 Sample Targeting Process Dealer set up Data collection Standard sample requirements # lengths & ages, age structures Docs. # 1-Manual & 2-Work Instructions U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 10
11 Data Processing Length data keyed into Biological Sample Monitoring Database System (BSMDBS) web form Doc. #3-BSM Web Entry System Within 1 week of collection Available immediately on BSDMBS web site Available to users in Oracle tables BSMDBS (raw data) CFDBS Age structures shipped to FEMAD/PBB U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 11
12 Data Quality BSM audits Duplicate data Missing data elements Inappropriate length Subsequent audits Docs. #4-Sampling Program Review Manual, #6 Sample Updating Process & #7-Guidelines for Samplers on Missing or Inaccurate Vessel Trip Reports Update trip identification fields Missing dealer or VTR reports Duplicate data Missing data elements U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 12
13 Program Results Species 40 Lengths collected Lengths Species sampled Year U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 13
14 Program Results 2012 Summary 3,689 Samples (32 species) 242,561 lengths 41,980 ages Annually, commercial port sampling is reviewed and sampling requests are updated Species Samples Lengths Ages ANGLER (GOOSEFISH) 92 6, BLUEFISH 132 8,037 2,702 BUTTERFISH 22 2, COD ,896 6,707 CUSK FLOUNDER, WINTER 149 8,812 2,806 FLOUNDER, SUMMER ,086 3,355 FLOUNDER, WITCH 158 4,268 1,777 FLOUNDER, YELLOWTAIL ,435 4,520 FLOUNDER, AM. PLAICE 109 7,173 2,125 FLOUNDER, SAND-DAB HADDOCK ,277 6,539 HAGFISH 18 1,835. HAKE, RED 32 3,179. HAKE, WHITE 97 6,864. HALIBUT, ATLANTIC MACKEREL, ATLANTIC 27 2, REDFISH 15 1, POLLOCK 139 9,238 2,421 SCUP 103 9,554 2,560 SEA BASS, BLACK 135 7,686 2,704 DOGFISH, SPINY 51 4,058. TILEFISH, GOLDEN 90 7,443 1,576 OFFSHORE HAKE HAKE, SILVER ,943. CRAB, RED 15 1,537. LOBSTER, AMERICAN 68 6,862. QUAHOG, OCEAN 181 5,430. CLAM, SURF 224 6,725. SCALLOP, SEA ,059. SQUID (LOLIGO) ,031. SQUID (ILLEX) 68 6,800. U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 14
15 Examples of Stratification Sampling Strata used at the NEFSC: Region-species market category gear stock area-quarter sex info is collected for some species with external characteristic like lobsters, redfish, spiny dogfish; yellowtail flounder (ovary seen through skin) Standard Sample = 100 lens/25 ages (50 length/10 ages) BIOLOGICAL SAMPLING REQUIREMENTS SUMMARY - FY2013 Region Species Mkt Cat Gear Stock Area Oct-Dec Jan-Mar Apr-Jun Jul-Sep TOTAL MA-N WITCH FLOUNDER LRG OT 51,52, MA-S/CC WITCH FLOUNDER LRG OT 51,52, ME/NH WITCH FLOUNDER LRG OT 51,52, MA-N WITCH FLOUNDER MED OT 51,52, MA-S/CC WITCH FLOUNDER MED OT 51,52, ME/NH WITCH FLOUNDER MED OT 51,52, MA-N WITCH FLOUNDER SM/PW OT 51,52, MA-S/CC WITCH FLOUNDER SM/PW OT 51,52, ME/NH WITCH FLOUNDER SM/PW OT 51,52, WITCH FLOUNDER TOTAL
16 Region Species Mkt Cat Gear Stock Area Oct-Dec Jan-Mar Apr-Jun Jul-Sep TOTAL MA-N ATLANTIC COD LRG OT MA-N ATLANTIC COD MKT OT MA-N ATLANTIC COD SCROD OT MA-N ATLANTIC COD WHALE ALL MA-S/CC ATLANTIC COD LRG OT MA-S/CC ATLANTIC COD MKT OT MA-S/CC ATLANTIC COD SCROD OT MA-S/CC ATLANTIC COD WHALE ALL MA-S/CC ATLANTIC COD LRG LL MA-S/CC ATLANTIC COD MKT LL MA-S/CC ATLANTIC COD SCROD LL MA-S/CC ATLANTIC COD Steaker LL ME/NH ATLANTIC COD LRG OT ME/NH ATLANTIC COD MKT OT ME/NH ATLANTIC COD SCROD OT ME/NH ATLANTIC COD WHALE ALL MA-N ATLANTIC COD LRG OT 52, MA-N ATLANTIC COD LRG GN 52, MA-N ATLANTIC COD MKT GN 52, MA-N ATLANTIC COD MKT OT 52, MA-N ATLANTIC COD SCROD OT 52, MA-N ATLANTIC COD WHALE ALL 52, MA-S/CC ATLANTIC Sampling COD LRG Request GN 52,53,56 for COD: MA-S/CC ATLANTIC COD LRG LL 52, MA-S/CC ATLANTIC COD LRG OT 52, MA-S/CC ATLANTIC COD MKT GN 52,53, MA-S/CC ATLANTIC COD MKT LL 52, MA-S/CC ATLANTIC COD MKT OT 52, MA-S/CC ATLANTIC COD SCROD GN 52,53, MA-S/CC ATLANTIC COD SCROD OT 52, MA-S/CC ATLANTIC COD SCROD LL 52, MA-S/CC ATLANTIC COD STEAKER LL 52, MA-S/CC ATLANTIC COD STEAKER GN 52, MA-S/CC ATLANTIC COD WHALE ALL 52,53, ME/NH ATLANTIC COD LRG OT 52, ME/NH ATLANTIC COD MKT GN 52, ME/NH ATLANTIC COD MKT OT 52, ME/NH ATLANTIC COD SCROD OT 52, ME/NH ATLANTIC COD WHALE ALL 52,53, ME/NH ATLANTIC COD LRG GN 52, MA-N ATLANTIC COD LRG GN MA-N ATLANTIC COD LRG OT MA-N ATLANTIC COD MKT GN MA-N ATLANTIC COD MKT OT MA-N ATLANTIC COD SCROD GN MA-N ATLANTIC COD SCROD OT MA-S/CC ATLANTIC COD LRG GN MA-S/CC ATLANTIC COD LRG LL MA-S/CC ATLANTIC COD MKT GN MA-S/CC ATLANTIC COD MKT LL MA-S/CC ATLANTIC COD SCROD GN MA-S/CC ATLANTIC COD SCROD LL ME/NH ATLANTIC COD LRG GN ME/NH ATLANTIC COD LRG OT ME/NH ATLANTIC COD MKT GN ME/NH ATLANTIC COD MKT OT ME/NH ATLANTIC COD SCROD GN ME/NH ATLANTIC COD SCROD OT ME/NH ATLANTIC COD STEAKER ALL ME/NH ATLANTIC COD WHALE ALL ATLANTIC COD TOTAL Region x Species x Market Category x Gear x Stock Area x Quarter GM and GB stocks (plus EGB stock component)
17 Gulf of Maine Haddock Length Sampling by market category and quarter Large Scrod Total Commercial Metric tons/100 Year QTR 1 QTR 2 QTR 3 QTR 4 QTR 1 QTR 2 QTR 3 QTR 4 lengths landings (mt) lengths Length 597 sampling intensity for GM 84 haddock has increased over 42 time In , mt per lengths combined 1992 & 1994 and ran annual Taken from Palmer et al. WP C Stock Assessment Update February 2012
18 QTR 1 QTR 2 QTR 3 QTR 4 QTR 1 QTR 2 QTR 3 QTR 4 QTR 1 QTR 2 QTR 3 QTR Year Gulf of Maine Haddock Age Sampling by market category and quarter Large Scrod Combined Age sampling intensity for GM haddock Total ages Commercial landings (mt) Metric tons/100 ages has also increased over time In , mt 39 per ages Taken from Palmer et al. WP C Stock Assessment Update February 2012
19 Program Results Sampling Intensity Sampling Ratio mt / 100 lengths FLOUNDER, WINTER FLOUNDER, SUMMER FLOUNDER, WITCH FLOUNDER, YELLOWTAIL FLOUNDER, AM. PLAICE FLOUNDER, SAND-DAB Sampling Ratio mt / 100 lengths COD HADDOCK REDFISH POLLOCK Year Year
20 Program Results CVs for Numbers at age BioStat Bootstrapping for Estimating Uncertainty in Commercial Landings at Age By Legault, Brooks, and Seaver Groundfish Assessment Review Meeting 2008 WP #6 Example: Witch Flounder CVs for numbers of fish at age Year age4 age5 age6 age7 age8 age9 age10 age The CV by age, as well as the covariance matrix, can be used as an indicator of sufficiency of sampling when deciding a plus group, or for modifying future sample collection requests, or can inform precision of estimates for some stock assessment models.
21 Coefficient of Variation (CV) Coefficient of Variation (CV) Coefficient of Variation (CV) Program Results CVs for Numbers at Age Year Year GM COD Ages 3-6 WITCH FL Ages GM HAD Ages 4-9 GB HAD Ages 3-9+ Coefficient of Variation (CV) Coefficient of Variation (CV) Coefficient of Variation (CV) Year GB WINT FL Ages Year GB YT FL Ages 3-4 Year Year
22 Participation in ACCSP NEFSC sampling targets are integrated into the Atlantic Coast Cooperative Statistics Program s Biological Review Panel sampling target matrix Example: Witch flounder for FY2011 REGION COMMON_NAME MKT_CAT GRADE GEAR STAT_AREA QTR1_ LEN QTR2_ LEN QTR3_ LEN QTR4_ LEN TOTAL MAX_INDIV ADDL_MEAS MAX_AGES AGES_REQ AGE_TYPE MA-N WITCH FLOUNDER LRG Round OT 51,52, Otolith MA-S/CC WITCH FLOUNDER LRG Round OT 51,52, Otolith ME/NH WITCH FLOUNDER LRG Round OT 51,52, Otolith MA-N WITCH FLOUNDER MED Round OT 51,52, Otolith MA-S/CC WITCH FLOUNDER MED Round OT 51,52, Otolith ME/NH WITCH FLOUNDER MED Round OT 51,52, Otolith MA-N WITCH FLOUNDER SM/PW Round OT 51,52, Otolith MA-S/CC WITCH FLOUNDER SM/PW Round OT 51,52, Otolith ME/NH WITCH FLOUNDER SM/PW Round OT 51,52, Otolith WITCH FLOUNDER TOTAL
23 Participation in National Working Group Sampling Intensity and Processing (SIP) Working Group Cross-Regional Strategic Planning for Fishery-Dependent Biological Sampling The purposes of this project are to: (1) quantify the intensity of biological sampling of commercial fisheries within each region, (2) distribute funds specified for biological sampling strategically among the NOAA Fisheries Science Centers based on the assessment of sampling intensity, (3) provide a tool for assessing biological sampling needs within regions, (4) provide a basis for requesting additional funding for biological sampling, and (5) demonstrate biological sampling successes.
24 SIP Working Group - Sampling Rubric There are two components to the rubric: 1) Data Inadequacy - An evaluation of sampling performance for each species. Higher scores correspond to inadequate data collection and thus the need for more funding. Lower scores correspond to better data collection and thus the need for less funding. 2) Species Emphasis - A weighted score based on the importance/value for each species. Higher scores correspond to more important species and thus the need for more funding. Lower scores correspond to less important species and thus the need for less funding.
25 Program Strengths Flexibility in sampling opportunities Able to modify targets within quarter Positioned in all major ports Cost effective Pay only for lengths collected Samples requested can be modified w/o contract change Participation in HQ Sample Intensity and Processing WG Coordination between groups & sharing of information Bi-weekly & monthly program calls Program and issue management web systems (Wiki & Jira) Information sharing on current industry activities Shared infrastructure U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 25
26 Program Challenges Low landings in some strata Fewer sampling opportunities Harder to find Smaller sample sizes Limited collection technology Under reporting of multiple areas on VTR Multiple stock area trips Cod, haddock, yellowtail flounder, winter flounder, monkfish, red hake, and silver hake Contract type changes (time vs. per sample vs. per length) New biases, changes in precision? U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 26
27 Program Challenges Multiple stock area trips Trip could not be sampled for cod U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 27
28 Program Improvement Suggestions Improve collection technology Develop near-real time monitoring Better access and utilization of current data Derived data sets, dealer, VTR, VMS Better coordination Other NMFS-NE fishery dependent programs Match sample requests to current landings State partners / ACCSP U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 28
29 Questions U.S. Department of Commerce National Oceanic and Atmospheric Administration NOAA Fisheries Page 29
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