MyNODC: National Oceanographic Data, Information and Knowledge Repository (MyDAS Project)
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1 MyNODC: National Oceanographic Data, Information and Knowledge Repository (MyDAS Project) Dr. Dickson Lukose Artificial Intelligence Lab. 1 st October 2015
2 Degree of completion of the initial design targets for the ocean component of the Global Climate Observing System to be reported to the UN Framework Convention on Climate Change SBSTA (Bonn, June 2009).
3 IODE NETWORK OF NATIONAL OCEANOGRAPHIC DATA CENTRES China Brussels Malaysia (?) 5 World Ocean Data Centre System (WODCS): 1. Russia 2. China 3. USA 4. Japan 5. Australia - NODC 3
4 INTEGRATION WITH IODE The data must be: Free and unrestricted Non commercial Intergovernmental Oceanographic Commission of UNESCO International Oceanographic Data and Information Exchange Oceanographic Data Information Network (ODIN WESTPAC) Need to establish: 1. Meta-data. 2. Ontology to define standard vocabularies. 3. Data Exchange Language to being both human and machine understandable. 4. Cloud Computing to provide high computing power. 5. Subject headings. 4
5 MOSTI Flagship Programme FLAGSHIP PROGRAMME TITLE: MyDAS - An Integrated Malaysian Oceanographic Data and Information Management System for Ocean Modeling and Forecasting Proposal Submission: 2012 Chelonia mydas 5
6 Project Details Summary: Oceanographic knowledge management gateway comprised of : Integrated Data, Information and Knowledge management framework, Comprehensive Ocean Observation, Data Collection and Assimilation, Modeling, Simulation and Forecasting, Archiving and Sharing platform. Duration: 36 months Research Areas: Cyber Security, Environment and Climate Change. Project Start : 1 st September
7 Current Project Team Project Leader: Haji Shahruddin Bin Yusof Project Members Foreign Experts Stakeholders Team Leaders Responsibilities National Oceanographic Directorate (NOD), MOSTI Haji Shahruddin Bin Yusof Coordinate research activities, publicity and awareness MIMOS Bhd Dr. Dickson Lukose Develop MyDAS integrated modules Universiti Malaysia Terengganu (UMT) Universiti Kebangsaan Malaysia (UKM) Project Proposal and Funding secured under the stewardship of Prof Datuk Dr Nor Aieni Mokhtar Assc. Prof. Dr Aidy Prof. Dr. Fredolin Tangang Oceanographic Data Collection Oceanographic Modeling and Forecasting system 7
8 Survey of Existing Systems 8
9 Geographical Areas MyOcean Podaac BODC NOAA - Global Ocean - Arctic Ocean - Baltic Sea - Atlantic-European - North West Shelf-Ocean - Atlantic-European South West Shelf-Ocean - Mediterranean Sea - Black Sea - Alaska - Antartic - Antartica - Arctic - Atlantic Ocean - Atlantic and Pacific - Australia - Baltic Sea - Bering Sea - Central America - China - Eastern Pacific Ocean - Europe - Global - Greenland - Indonesia - Japan - Mediterranean Sea - North Africa - North America - North Sea - North and Central America - Northern Atlantic - Oceania - Pacific - Pacific Ocean - Siberia - South Africa - South America - Southern Asia - Tropics - Western Pacific Ocean - Alaska - Antartic - Antartica - Arctic - Atlantic Ocean - Atlantic and Pacific - Australia - Baltic Sea - Bering Sea - Central America - China - Eastern Pacific Ocean - Europe - Global - Greenland - Indonesia - Japan - Mediterranean Sea - North Africa - North America - North Sea - North and Central America - Northern Atlantic - Oceania - Pacific - Pacific Ocean - Siberia - South Africa - South America - Southern Asia - Tropics - Western Pacific Ocean - Arctic Region - Gulf of Mexico - GIN Seas (Greenland, Iceland, Norwegian) - East Asian 9
10 Parameters MyOcean Podaac BODC NOAA - Temperature - Salinity - Currents - Sea Ice - Sea Level - Ocean Wind - Ocean Optics - Chemistry - Ocean Biology - Ocean Chlorophyll - Atmospheric electricity - Atmospheric Water Vapor - Geodetics/Gravity - Microwave - Ocean Circulation - Ocean Optics - Ocean Pressure - Ocean Temperature - Ocean Waves - Ocean Winds - Radar - Salinity/Density - Acoustics - Bathymetry and topography - Currents (horizontal and vertical velocity, Lagrangian currents and water transport rates - Meteorology Radiosonde, Met. stations and data buoys - Optical properties (pigments, turbidity, irradiance) - Sea level - Water column temperature and salinity - Water column chemistry (nutrients, carbons, oxygen) - Waves (statistics and spectra) - Temperature - Salinity - Ocean Currents - Sea Level - Chlorophyll - Oxygen - Waves - Plankton - Nutrients - Biology Data - Satellite Data - Profile Data - ph 10
11 Time Coverage MyOcean Podaac BODC NOAA - Forecast - Near Real- Time - Multi-year (*) - Time invariant products ( either from Observation or Modelling). - Near Real Time(< 12 hrs) - Delayed Mode(> 12 hrs) - Historical (nonactive) - Multi-year (*) - Time invariant - Near Real-time - Historical 11
12 Data Formats MyOcean Podaac BODC NOAA - netcdf - netcdf - HDF5 - BODC request (ASCII) format - Ocean Data View(ODV) - QXF (netcdf) format - Climate and Forecast (netcdf) format - netcdf - GeoTIFF - HDF4-SDS - HDF5 - GZIP Observation/Models MyOcean Podaac NOAA - Model - Satellite observation - In-Situ observation - Platform (satellite, In- Situ, buoy, etc.) - Sensor - Satellite - Radar - Model - Weather balloon - Paleoclimatology 12
13 MyNODC Framework 13
14 Technology Platforms Mi-Semantic Mi-Doc Mi-Crypto Mi-Guard Mi-Cloud NetCDF Viewer Mi-UAP OpenGIS
15 Mi-Semantics (Semantic Technology Platform) 2013 MIMOS Berhad. All Rights Reserved. 15
16 Design: Oceanography Ontology RockSpecies Information hasdata haslocation Organization ownedby hasphysicaldesc Location startcollected Data Status approvalstatus DataFormat hasdataformat collectedby hasfileid foaf:project foaf:person Biological Species hasrockspecies hascommonname endcollected useinstrument Instrument Biological Family hasrockfamily Biological Class hasrockclass identifiedby noofspecimen identified String hasimageid String String String Integer Float hasweight Measurement Unit hasweight MeasumentUnit Security Restriction Status datasecurityrestriction Access Restriction Status dataaccessrestriction hascontactperson Geological Oceanography Data hasdata haslocation Organization ownedby hascontactperson Location startcollected Data Status approvalstatus DataFormat hasdata Format collectedby foaf:project foaf:person endcollected use Instrument Instrument Collection Method hascollectionmethod collected haswblongitude haseblongitude Float hassblatitude Float String haskeyword hasgeological Parameter Geological Oceanography Parameter haslatitude haslongitude Float lastaccess Boolean archivestatus String dc:description Security Restriction Status datasecurityrestriction hasnetcdfid hasimage ID hasnblatitude hasfileid hasgisid Specis Distribution hasdata haslocation Organization ownedby hascontactperson dc:description Location collected Data Status approvalstatus DataFormat hasdataformat collectedby String hasfileid foaf:project foaf:person String Biological Oceanography rdf:type Species hasbiologicalspecies Data Collection Method hascollection Method Family hasbiologicalfamily Security Restriction Status datasecurityrestriction Access Restriction Status dataaccessrestriction Physical Oceanography Data hasdata haslocation Organization ownedby hascontactperson Location startcollected Data Status approvalstatus Data Format hasdataformat collectedby foaf:project foaf:person endcollected use Instrument Instrument Collection Method hascollectionmethod collected haslatitude haslongitude Float haswblongitude haseblongitude Float hassblatitude Float String haskeyword hasphysical Parameter Physical Oceanography Parameter lastaccess Boolean archive Status String hasfileid dc:description Security Restriction Status datasecurity Restriction hasnetcdfid hasimage ID hasgisid hasnblatitude 16
17 Production Environment (NOD) mynodc-prodapp mynodc-prodmiuap MyNODC Mi-UAP?.?.?.? 4 CORE 8 GB RAM 80 GB HDD MyNODC Application?.?.?.? 8 CORE 16 GB RAM 80 GB HDD mynodc-prod-midoc Mi-Guard IP:?.?.?.? 4 CORE 10 GB RAM 80 GB HDD TAPE BACKUP Backup Server Mi-Doc Authenticator Delegator Lookup Mi-Harvester T-ANNE KBInterface KBInterface KBInterface IP:?.?.?.? 12 CORE 32 GB RAM 50 GB HDD mynodc-prod-stp2 VisualSemanticQuery SemanticQuery KBInterface KBInterface KBInterface IP:?.?.?.? 12 CORE 32 GB RAM 50 GB HDD Mi-Doc Database mynodc-prod-db MyNODC DATABASE OpenGIS Tools mynodc-prod-ag MyNODC KNOWLEDGE BASE MyNODC GIS DATABASE IP:?.?.?.? 8 CORE 12 GB RAM 200 GB HDD IP:?.?.?.? 8 CORE 16 GB RAM 1 TB HDD mynodc-prodstp1 mynodc-prodarchive-db MyNODC ARCHIVE DATABASE Backup Software IP:?.?.?.? 4 CORE 12 GB RAM 2 TB HDD Virtual Machines 17
18 Landing Page 18
19 Dashboards 19
20 Data Upload 20
21 Semantic Search 21
22 Details Page Download Data 22
23 Data Visualization 23
24 Simulation, Forecast, Reports 24
25 Outreach Programmes 25
26 Scheduled Outreach Activities (Jan 16 to Mar 16) Location Number of Outreach Activity Location Number of Outreach Activity Penang 2 Kota Bharu 1 Kuala Terengganu 2 Kota Kinabalu 1 Ipoh 1 Sandakan 1 Kuala Lumpur 3 Miri 1 Melaka 1 Kuching 1 Johor Bahru 1 Kuantan 1 26
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