Biopharmaceutical Glycosylation Analysis

Size: px
Start display at page:

Download "Biopharmaceutical Glycosylation Analysis"

Transcription

1 Biopharmaceutical Glycosylation Analysis

2 Glycosylation Analysis: Product Offering Molecular model of erythropoietin with complex N-linked glycans. Courtesy of M.R Wormald and R.A Dwek, Oxford Glycobioloy Institute and P.M. Rudd, NIBRT NIBRT s Biopharmaceutical Glycosylation Analysis provides: An automated high throughput glycan analysis platform. Fully detailed linkage and sequence analysis of glycans. Directly amenable for at-line PAT format as part of your QBD workflows. Technology is mobile and scalable which can be transferred directly to the Client s site. Competitive pricing structures.

3 Glycosylation Critical Quality Attributes (GCQAs) International Conference on Harmonisation (ICH) Harmonised Tripartite Guideline Q6B requires carbohydrate content, structure of carbohydrate chain and oligiosaccharides and glycosylation sites present on therapeutic proteins to be characterised as extensively as possible. The GCQAs required for biologics are listed below: All of the above GCQAs can be determined from NIBRT s analytical workflows. For details regarding the symbolic representation of glycans please refer to D.J. Harvey et al, PROTEOMICS, 9, (2009), 3796.

4 Analytical Complexity Tailored Analysis to Suit Your Needs Mass Spectrometry: HILIC profile of IgG N-glycans Initial Profiling: Sample preparation Glycan release Glycan labelling HILIC profiling Sialic acid linkage analysis Data interpretation and preliminary assignment. Structural Analysis: Exoglycosidase array digestion and profiling Anion exchange fractionation Data interpretation and preliminary assignment. Sialic Acid Speciation: Anion exchange analysis for sialic acid content Sialic acid speciation MALDI-Tof-MS ESI MS/MS analysis of individual glycans for Level 1-3 structural confirmation HILIC profile of N-glycans from Sigma Gonadatrophin Level 1 Level 2 Level 3 Level 4

5 Glycan Analysis Platform High-throughput glycan-analysis

6 GlycoBase v 3.0 GlycoBase v3.0 is a proprietary novel database that contains retention data (expressed as glucose unit values) for more than 400 2AB-labeled N-linked glycan structures by a combination of HILIC-fluorescence detection with exoglycosidase sequencing with confirmation via mass spectrometry. Each entry is comprehensively annotated and includes the following information: Screenshot from GlycoBase v3.0 A pictorial representation of the structure depicting monosaccharide sequence and linkages. HILIC-fluorescence retention time expressed as an average GU value, with standard deviation. Monosaccharide composition. Links to verified exoglycosidase digestion products. Related reference information A list of the subgroups in which the glycan can be found. NIBRT s proprietary versions of GlycoBase are updated on a regular basis and includes all published data and associated digestion profiles, together with confidential information generated by NIBRT. NIBRT offers a variety of deployment and customer support models to suit Client s specific requirements for access to GlycoBase v3.0.

7 Laboratory Core Competencies Liquid Chromatography: HILIC and ion exchange based glycosylation profiling. LC-MS of glycans. Modern suite of HPLC and UPLC instrumentation. Mass Spectrometry: MS characterisation of glycans using MALDI-Tof, ESI-MS, ESIMS/MS and ESI- MS n. Waters MALDI, Waters Q-Tof, Advion Nanomate and Agilent Ion Trap mass spectrometers. GlycoBioInformatics: GlycoBase a web based resource for HILIC data annotation. AutoGU an automated experimental data annotation tool. GlycoExtractor a tool for high throughput data extraction and searching. Electrophoretic Techniques: CE-LIF analysis of glycans. 1D and 2D SDS-PAGE. Proteomics and glycoproteomics

8 Further Information NIBRT s existing partners include: For further information about our Biopharmaceutical Glycosylation Analysis please contact us: Web: info@nibrt.ie Phone:

NUVISAN Pharma Services

NUVISAN Pharma Services NUVISAN Pharma Services CESI MS Now available! 1st CRO in Europe! At the highest levels of quality. LABORATORY SERVICES Equipment update STATE OF THE ART AT NUVISAN CESI MS Now available! 1st CRO in Europe!

More information

SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data

SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization Jenny Albanese 1, Matthias Glueckmann 2 and Christof Lenz 2 1 AB

More information

ProteinScape. Innovation with Integrity. Proteomics Data Analysis & Management. Mass Spectrometry

ProteinScape. Innovation with Integrity. Proteomics Data Analysis & Management. Mass Spectrometry ProteinScape Proteomics Data Analysis & Management Innovation with Integrity Mass Spectrometry ProteinScape a Virtual Environment for Successful Proteomics To overcome the growing complexity of proteomics

More information

Introduction to Proteomics 1.0

Introduction to Proteomics 1.0 Introduction to Proteomics 1.0 CMSP Workshop Tim Griffin Associate Professor, BMBB Faculty Director, CMSP Objectives Why are we here? For participants: Learn basics of MS-based proteomics Learn what s

More information

SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data

SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization Jenny Albanese1, Matthias Glueckmann2 and Christof Lenz2 1Applied

More information

Aiping Lu. Key Laboratory of System Biology Chinese Academic Society APLV@sibs.ac.cn

Aiping Lu. Key Laboratory of System Biology Chinese Academic Society APLV@sibs.ac.cn Aiping Lu Key Laboratory of System Biology Chinese Academic Society APLV@sibs.ac.cn Proteome and Proteomics PROTEin complement expressed by genome Marc Wilkins Electrophoresis. 1995. 16(7):1090-4. proteomics

More information

Proteomics in Practice

Proteomics in Practice Reiner Westermeier, Torn Naven Hans-Rudolf Höpker Proteomics in Practice A Guide to Successful Experimental Design 2008 Wiley-VCH Verlag- Weinheim 978-3-527-31941-1 Preface Foreword XI XIII Abbreviations,

More information

Transzlációs glikomika

Transzlációs glikomika Ezerarcú szénhidrátok Az MTA Kémiai Tudományok Osztályának tudományos ülése Transzlációs glikomika Olajos Marcell és Guttman András MTA-PE Transzlációs Glikomika Kutatócsoport, Pannon Egyetem, Veszprém

More information

Thermo Scientific PepFinder Software A New Paradigm for Peptide Mapping

Thermo Scientific PepFinder Software A New Paradigm for Peptide Mapping Thermo Scientific PepFinder Software A New Paradigm for Peptide Mapping For Conclusive Characterization of Biologics Deep Protein Characterization Is Crucial Pharmaceuticals have historically been small

More information

Application Note # LCMS-62 Walk-Up Ion Trap Mass Spectrometer System in a Multi-User Environment Using Compass OpenAccess Software

Application Note # LCMS-62 Walk-Up Ion Trap Mass Spectrometer System in a Multi-User Environment Using Compass OpenAccess Software Application Note # LCMS-62 Walk-Up Ion Trap Mass Spectrometer System in a Multi-User Environment Using Compass OpenAccess Software Abstract Presented here is a case study of a walk-up liquid chromatography

More information

AB SCIEX TOF/TOF 4800 PLUS SYSTEM. Cost effective flexibility for your core needs

AB SCIEX TOF/TOF 4800 PLUS SYSTEM. Cost effective flexibility for your core needs AB SCIEX TOF/TOF 4800 PLUS SYSTEM Cost effective flexibility for your core needs AB SCIEX TOF/TOF 4800 PLUS SYSTEM It s just what you expect from the industry leader. The AB SCIEX 4800 Plus MALDI TOF/TOF

More information

Application Note # LCMS-66 Straightforward N-glycopeptide analysis combining fast ion trap data acquisition with new ProteinScape functionalities

Application Note # LCMS-66 Straightforward N-glycopeptide analysis combining fast ion trap data acquisition with new ProteinScape functionalities Application Note # LCMS-66 Straightforward N-glycopeptide analysis combining fast ion trap data acquisition with new ProteinScape functionalities Introduction Glycosylation is one of the most common and

More information

of Biologics Using LC/MS in Compliant Laboratories

of Biologics Using LC/MS in Compliant Laboratories Demonstrating Comparability and Consistency of Biologics Using LC/MS in Compliant Laboratories Patrick Boyce Biopharmaceutical Marketing Manager Europe & India Waters 2011 Waters Corporation Overview Challenges

More information

GLYCOSYLATION OF PROTEINS STRUCTURE, FUNCTION AND ANALYSIS

GLYCOSYLATION OF PROTEINS STRUCTURE, FUNCTION AND ANALYSIS LIFE SCIENCE I TECHNICAL BULLETIN ISSUE N 48 / JULY 2011 GLYCOSYLATION OF PROTEINS STRUCTURE, FUNCTION AND ANALYSIS AUTHOR: RICHARD EASTON, PH.D., TEAM LEADER, CARBOHYDRATE ANALYSIS, SGS M-SCAN LTD Glycosylation

More information

Session 1. Course Presentation: Mass spectrometry-based proteomics for molecular and cellular biologists

Session 1. Course Presentation: Mass spectrometry-based proteomics for molecular and cellular biologists Program Overview Session 1. Course Presentation: Mass spectrometry-based proteomics for molecular and cellular biologists Session 2. Principles of Mass Spectrometry Session 3. Mass spectrometry based proteomics

More information

Pep-Miner: A Novel Technology for Mass Spectrometry-Based Proteomics

Pep-Miner: A Novel Technology for Mass Spectrometry-Based Proteomics Pep-Miner: A Novel Technology for Mass Spectrometry-Based Proteomics Ilan Beer Haifa Research Lab Dec 10, 2002 Pep-Miner s Location in the Life Sciences World The post-genome era - the age of proteome

More information

泛 用 蛋 白 質 體 學 之 質 譜 儀 資 料 分 析 平 台 的 建 立 與 應 用 Universal Mass Spectrometry Data Analysis Platform for Quantitative and Qualitative Proteomics

泛 用 蛋 白 質 體 學 之 質 譜 儀 資 料 分 析 平 台 的 建 立 與 應 用 Universal Mass Spectrometry Data Analysis Platform for Quantitative and Qualitative Proteomics 泛 用 蛋 白 質 體 學 之 質 譜 儀 資 料 分 析 平 台 的 建 立 與 應 用 Universal Mass Spectrometry Data Analysis Platform for Quantitative and Qualitative Proteomics 2014 Training Course Wei-Hung Chang ( 張 瑋 宏 ) ABRC, Academia

More information

Introduction to Proteomics

Introduction to Proteomics Introduction to Proteomics Why Proteomics? Same Genome Different Proteome Black Swallowtail - larvae and butterfly Biological Complexity Yeast - a simple proteome 6,113 proteins = 344,855 tryptic peptides

More information

How To Test For Contamination In Large Volume Water

How To Test For Contamination In Large Volume Water Automated Solid Phase Extraction (SPE) of EPA Method 1694 for Pharmaceuticals and Personal Care Products in Large Volume Water Samples Keywords Application Note ENV0212 This collaboration study was performed

More information

How To Analyse A Glycan

How To Analyse A Glycan Glyco-Bioinformatics Bits n Bytes of Sugars October 4 th 8 th, 2009, Potsdam, Germany 37 Automated N-Glycan Composition Analysis with LC-MS/MSMS Hannu Peltoniemi 1,*, Ilja Ritamo 2, Jarkko Räbinä 2 and

More information

Contents. Preface to the Second Edition List of Contributors XIII

Contents. Preface to the Second Edition List of Contributors XIII Contents Preface to the Second Edition List of Contributors XIII XI 1 The MALDI Process and Method 1 Franz Hillenkamp, Thorsten W. Jaskolla, and Michael Karas 1.1 Introduction 1 1.2 Analyte Incorporation

More information

High resolution mass spectrometry (HRMS*) in Graz

High resolution mass spectrometry (HRMS*) in Graz High resolution mass spectrometry (HRMS*) in Graz 10.2.2012 * Instruments with high resolution where exact mass measurements can be performed 1 HRMS in Graz s and Ionization Techniques 2 6 3 5 4 1 TU Graz

More information

AGILENT S BIOINFORMATICS ANALYSIS SOFTWARE

AGILENT S BIOINFORMATICS ANALYSIS SOFTWARE ACCELERATING PROGRESS IS IN OUR GENES AGILENT S BIOINFORMATICS ANALYSIS SOFTWARE GENESPRING GENE EXPRESSION (GX) MASS PROFILER PROFESSIONAL (MPP) PATHWAY ARCHITECT (PA) See Deeper. Reach Further. BIOINFORMATICS

More information

Chapter 14. Modeling Experimental Design for Proteomics. Jan Eriksson and David Fenyö. Abstract. 1. Introduction

Chapter 14. Modeling Experimental Design for Proteomics. Jan Eriksson and David Fenyö. Abstract. 1. Introduction Chapter Modeling Experimental Design for Proteomics Jan Eriksson and David Fenyö Abstract The complexity of proteomes makes good experimental design essential for their successful investigation. Here,

More information

National Institute for Bioprocessing Research and Training (NIBRT)

National Institute for Bioprocessing Research and Training (NIBRT) NIBRT Catalogue 2013 2012 Training Education Training and Education Catalogue National Institute for Bioprocessing Research and Training (NIBRT) www.nibrt.ie Contents Welcome letter 1 Open courses... 3

More information

Using Natural Products Application Solution with UNIFI for the Identification of Chemical Ingredients of Green Tea Extract

Using Natural Products Application Solution with UNIFI for the Identification of Chemical Ingredients of Green Tea Extract Using Natural Products Application Solution with UNIFI for the Identification of Chemical Ingredients of Green Tea Extract Lirui Qiao, 1 Rob Lewis, 2 Alex Hooper, 2 James Morphet, 2 Xiaojie Tan, 1 Kate

More information

Industry Perspective: Advantages of Open Access and Walkup LC/ MS Supporting Protein Drug Discovery and Development

Industry Perspective: Advantages of Open Access and Walkup LC/ MS Supporting Protein Drug Discovery and Development Industry Perspective: Advantages of Open Access and Walkup LC/ MS Supporting Protein Drug Discovery and Development Dawn Stickle, Agilent Technologies Originally presented by Eric Fang, Novartis Overview

More information

Fast and Automatic Mapping of Disulfide Bonds in a Monoclonal Antibody using SYNAPT G2 HDMS and BiopharmaLynx 1.3

Fast and Automatic Mapping of Disulfide Bonds in a Monoclonal Antibody using SYNAPT G2 HDMS and BiopharmaLynx 1.3 Fast and Automatic Mapping of Disulfide Bonds in a Monoclonal Antibody using SYNAPT G2 HDMS and BiopharmaLynx 1.3 Hongwei Xie and Weibin Chen Waters Corporation, Milford, MA, U.S. A P P L I C AT ION B

More information

Mascot Integra: Data management for Proteomics ASMS 2004

Mascot Integra: Data management for Proteomics ASMS 2004 Mascot Integra: Data management for Proteomics 1 Mascot Integra: Data management for proteomics What is Mascot Integra? What Mascot Integra isn t Instrument integration in Mascot Integra Designing and

More information

WATERS QUANTITATIVE ANALYSIS solutions

WATERS QUANTITATIVE ANALYSIS solutions More sensitivity. More speed. What more can you ask for in a complete quantitative analysis solution? WATERS QUANTITATIVE ANALYSIS solutions THE CHALLENGE OF QUANTITATIVE ANALYSIS Tandem mass spectrometry,

More information

Certificate of Analysis

Certificate of Analysis BQ-GPEP-A2G2S2-10U Certificate of Analysis Cat. #: BQ-GPEP-A2G2S2-10U Batch: B318-03 Size: 10 μg (3.49nmol) Glycan Structure Oxford Notation CFG Notation Text Notation The glycopeptide is comprised of

More information

Agilent 6000 Series LC/MS Solutions CONFIDENCE IN QUANTITATIVE AND QUALITATIVE ANALYSIS

Agilent 6000 Series LC/MS Solutions CONFIDENCE IN QUANTITATIVE AND QUALITATIVE ANALYSIS Agilent 6000 Series LC/MS Solutions CONFIDENCE IN QUANTITATIVE AND QUALITATIVE ANALYSIS AGILENT 6000 SERIES LC/MS SOLUTIONS UNRIVALED ACHIEVEMENT AT EVERY LEVEL The Agilent 6000 Series of LC/MS instruments

More information

Increasing Quality While Maintaining Efficiency in Drug Chemistry with DART-TOF MS Screening

Increasing Quality While Maintaining Efficiency in Drug Chemistry with DART-TOF MS Screening Increasing Quality While Maintaining Efficiency in Drug Chemistry with DART-TOF MS Screening Application Note Forensics Author Erin Shonsey Director of Research Alabama Department of Forensic Science Abstract

More information

Cliquid ChemoView 3.0 Software Simple automated analysis, from sample to report

Cliquid ChemoView 3.0 Software Simple automated analysis, from sample to report PRODUCT BULLETIN Cliquid ChemoView 3.0 Software for Routine Screening and Quantitation Cliquid ChemoView 3.0 Software Simple automated analysis, from sample to report KEY FEATURES Secure user login that

More information

Structural Analysis of Labeled N-Glycans from Proteins by LC-MS/MS Separated Using a Novel Mixed-Mode Stationary Phase

Structural Analysis of Labeled N-Glycans from Proteins by LC-MS/MS Separated Using a Novel Mixed-Mode Stationary Phase Structural Analysis of Labeled N-Glycans from Proteins by LC-MS/MS Separated Using a Novel Mixed-Mode Stationary Phase Udayanath Aich 1, Julian Saba 2, Xiaodong Liu 1, Srinivasa Rao 1, and Chris Pohl 1

More information

MultiQuant Software 2.0 for Targeted Protein / Peptide Quantification

MultiQuant Software 2.0 for Targeted Protein / Peptide Quantification MultiQuant Software 2.0 for Targeted Protein / Peptide Quantification Gold Standard for Quantitative Data Processing Because of the sensitivity, selectivity, speed and throughput at which MRM assays can

More information

OpenMS A Framework for Quantitative HPLC/MS-Based Proteomics

OpenMS A Framework for Quantitative HPLC/MS-Based Proteomics OpenMS A Framework for Quantitative HPLC/MS-Based Proteomics Knut Reinert 1, Oliver Kohlbacher 2,Clemens Gröpl 1, Eva Lange 1, Ole Schulz-Trieglaff 1,Marc Sturm 2 and Nico Pfeifer 2 1 Algorithmische Bioinformatik,

More information

Waters Core Chromatography Training (2 Days)

Waters Core Chromatography Training (2 Days) 2015 Page 2 Waters Core Chromatography Training (2 Days) The learning objective of this two day course is to teach the user core chromatography, system and software fundamentals in an outcomes based approach.

More information

LC-MS/MS for Chromatographers

LC-MS/MS for Chromatographers LC-MS/MS for Chromatographers An introduction to the use of LC-MS/MS, with an emphasis on the analysis of drugs in biological matrices LC-MS/MS for Chromatographers An introduction to the use of LC-MS/MS,

More information

A Fully Integrated Workflow for LC-MS/MS Analysis of Labeled and Native N-Linked Glycans Released From Proteins

A Fully Integrated Workflow for LC-MS/MS Analysis of Labeled and Native N-Linked Glycans Released From Proteins A Fully Integrated Workflow for LC-MS/MS Analysis of Labeled and Native N-Linked Glycans Released From Proteins Udayanath Aich, 1 Julian Saba, 2 Xiaodong Liu, 1 Srinivasa Rao, 1 Yury Agroskin, 1 and Chris

More information

Retrospective Analysis of a Host Cell Protein Perfect Storm: Identifying Immunogenic Proteins and Fixing the Problem

Retrospective Analysis of a Host Cell Protein Perfect Storm: Identifying Immunogenic Proteins and Fixing the Problem Retrospective Analysis of a Host Cell Protein Perfect Storm: Identifying Immunogenic Proteins and Fixing the Problem Kevin Van Cott, Associate Professor Dept. of Chemical and Biomolecular Engineering Nebraska

More information

Introduction to mass spectrometry (MS) based proteomics and metabolomics

Introduction to mass spectrometry (MS) based proteomics and metabolomics Introduction to mass spectrometry (MS) based proteomics and metabolomics Tianwei Yu Department of Biostatistics and Bioinformatics Rollins School of Public Health Emory University September 10, 2015 Background

More information

M.Sc. in Nano Technology with specialisation in Nano Biotechnology

M.Sc. in Nano Technology with specialisation in Nano Biotechnology M.Sc. in Nano Technology with specialisation in Nano Biotechnology Nanotechnology is all about designing, fabricating and controlling materials, components and machinery with dimensions on the nanoscale,

More information

Methods for Protein Analysis

Methods for Protein Analysis Methods for Protein Analysis 1. Protein Separation Methods The following is a quick review of some common methods used for protein separation: SDS-PAGE (SDS-polyacrylamide gel electrophoresis) separates

More information

Tackling the data analysis challenge for characterisation of biotherapeutics

Tackling the data analysis challenge for characterisation of biotherapeutics CASSS AT 2015 Berlin March 2015 1 Tackling the data analysis challenge for characterisation of biotherapeutics Carsten P Sönksen, Ph.D., Novo Nordisk Tackling the data analysis challenge 2 Personal background:

More information

Increasing the Multiplexing of High Resolution Targeted Peptide Quantification Assays

Increasing the Multiplexing of High Resolution Targeted Peptide Quantification Assays Increasing the Multiplexing of High Resolution Targeted Peptide Quantification Assays Scheduled MRM HR Workflow on the TripleTOF Systems Jenny Albanese, Christie Hunter AB SCIEX, USA Targeted quantitative

More information

Challenges in Computational Analysis of Mass Spectrometry Data for Proteomics

Challenges in Computational Analysis of Mass Spectrometry Data for Proteomics Ma B. Challenges in computational analysis of mass spectrometry data for proteomics. SCIENCE AND TECHNOLOGY 25(1): 1 Jan. 2010 JOURNAL OF COMPUTER Challenges in Computational Analysis of Mass Spectrometry

More information

Advances in Protein Characterization

Advances in Protein Characterization Rapid Assessment of Molecular Similarity between a Candidate Biosimilar and an Innovator Monoclonal Antibody Using Complementary LC MS Methods Intact protein LC MS detected a mass variance of 62 Da and

More information

Analytical Characterisation in support of Biologics Development

Analytical Characterisation in support of Biologics Development Medlmmune Analytical Characterisation in support of Biologics Development Alistair Kippen PhD Director, Analytical Biotechnology Biomanufacturing Technology Summit (University of Maryland & NIST) Institute

More information

INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE Q5B

INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE Q5B INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE ICH HARMONISED TRIPARTITE GUIDELINE QUALITY OF BIOTECHNOLOGICAL PRODUCTS: ANALYSIS

More information

BBSRC TECHNOLOGY STRATEGY: TECHNOLOGIES NEEDED BY RESEARCH KNOWLEDGE PROVIDERS

BBSRC TECHNOLOGY STRATEGY: TECHNOLOGIES NEEDED BY RESEARCH KNOWLEDGE PROVIDERS BBSRC TECHNOLOGY STRATEGY: TECHNOLOGIES NEEDED BY RESEARCH KNOWLEDGE PROVIDERS 1. The Technology Strategy sets out six areas where technological developments are required to push the frontiers of knowledge

More information

Supplementary Materials and Methods (Metabolomics analysis)

Supplementary Materials and Methods (Metabolomics analysis) Supplementary Materials and Methods (Metabolomics analysis) Metabolite extraction and mass spectrometry analysis. 12 Vldlr-/- knock out and 12 wild type (WT) retinas were separately frozen at -80 ºC in

More information

OplAnalyzer: A Toolbox for MALDI-TOF Mass Spectrometry Data Analysis

OplAnalyzer: A Toolbox for MALDI-TOF Mass Spectrometry Data Analysis OplAnalyzer: A Toolbox for MALDI-TOF Mass Spectrometry Data Analysis Thang V. Pham and Connie R. Jimenez OncoProteomics Laboratory, Cancer Center Amsterdam, VU University Medical Center De Boelelaan 1117,

More information

Statistical Analysis Strategies for Shotgun Proteomics Data

Statistical Analysis Strategies for Shotgun Proteomics Data Statistical Analysis Strategies for Shotgun Proteomics Data Ming Li, Ph.D. Cancer Biostatistics Center Vanderbilt University Medical Center Ayers Institute Biomarker Pipeline normal shotgun proteome analysis

More information

Tutorial for Proteomics Data Submission. Katalin F. Medzihradszky Robert J. Chalkley UCSF

Tutorial for Proteomics Data Submission. Katalin F. Medzihradszky Robert J. Chalkley UCSF Tutorial for Proteomics Data Submission Katalin F. Medzihradszky Robert J. Chalkley UCSF Why Have Guidelines? Large-scale proteomics studies create huge amounts of data. It is impossible/impractical to

More information

Exciting Trends in Bioprocessing

Exciting Trends in Bioprocessing Exciting Trends in Bioprocessing Alfred Doig and Susan Dana Jones, Ph.D. April 20, 2015 BioProcess Technology Consultants, Inc. 12 Gill Street, Suite 5450 Woburn, MA 01801 Exciting Trends in Bioprocessing

More information

Application Note # LCMS-81 Introducing New Proteomics Acquisiton Strategies with the compact Towards the Universal Proteomics Acquisition Method

Application Note # LCMS-81 Introducing New Proteomics Acquisiton Strategies with the compact Towards the Universal Proteomics Acquisition Method Application Note # LCMS-81 Introducing New Proteomics Acquisiton Strategies with the compact Towards the Universal Proteomics Acquisition Method Introduction During the last decade, the complexity of samples

More information

AxION edoor. Web-Based, Open-Access Mass Spectrometry Software

AxION edoor. Web-Based, Open-Access Mass Spectrometry Software AxION edoor Web-Based, Open-Access Mass Spectrometry Software 2 AxION edoor is the open-access software solution for today s fast-paced laboratory. It is designed to operate and optimize the management

More information

ProteinPilot Report for ProteinPilot Software

ProteinPilot Report for ProteinPilot Software ProteinPilot Report for ProteinPilot Software Detailed Analysis of Protein Identification / Quantitation Results Automatically Sean L Seymour, Christie Hunter SCIEX, USA Pow erful mass spectrometers like

More information

The Scheduled MRM Algorithm Enables Intelligent Use of Retention Time During Multiple Reaction Monitoring

The Scheduled MRM Algorithm Enables Intelligent Use of Retention Time During Multiple Reaction Monitoring The Scheduled MRM Algorithm Enables Intelligent Use of Retention Time During Multiple Reaction Monitoring Delivering up to 2500 MRM Transitions per LC Run Christie Hunter 1, Brigitte Simons 2 1 AB SCIEX,

More information

Effects of Intelligent Data Acquisition and Fast Laser Speed on Analysis of Complex Protein Digests

Effects of Intelligent Data Acquisition and Fast Laser Speed on Analysis of Complex Protein Digests Effects of Intelligent Data Acquisition and Fast Laser Speed on Analysis of Complex Protein Digests AB SCIEX TOF/TOF 5800 System with DynamicExit Algorithm and ProteinPilot Software for Robust Protein

More information

Drive Process Productivity

Drive Process Productivity Solutions for the Biopharmaceutical Industry Drive Process Productivity Innovative solutions from a proven technology leader Your partner in productivity Whether you are developing a process for a novel

More information

Quantification of Multiple Therapeutic mabs in Serum Using microlc-esi-q-tof Mass Spectrometry

Quantification of Multiple Therapeutic mabs in Serum Using microlc-esi-q-tof Mass Spectrometry Quantification of Multiple Therapeutic mabs in Serum Using microlc-esi-q-tof Mass Spectrometry Paula Ladwig, David Barnidge, Mindy Kohlhagen, John Mills, Maria Willrich, Melissa R. Snyder and David Murray

More information

Biotechpharma company profile

Biotechpharma company profile Biotechpharma company profile October 2013 1 History 2004 Biotechpharma UAB established as a proteomic research company in Vilnius, Lithuania 2005 Company became a member of UK s Northway group, investing

More information

Introduction to Bioprocessing

Introduction to Bioprocessing Introduction to Bioprocessing Cambridge Healthtech Institute Peptalk Palm Springs, CA Presented by Susan Dana Jones and Sheila Magil BioProcess Technology Consultants www.bptc.com BioProcess Technology

More information

Integrated computational and synthetic tools to drive the discovery of orthosteric protein-protein interaction inhibitors

Integrated computational and synthetic tools to drive the discovery of orthosteric protein-protein interaction inhibitors Faculty of Mathematics and Physical Sciences School of Chemistry Project Manager Part time 18.75 hours Fixed term for 24 months, available from 1 February 2016 Integrated computational and synthetic tools

More information

prime Innovation with Integrity The multidimensional path to the Proteome Mass Spectrometry

prime Innovation with Integrity The multidimensional path to the Proteome Mass Spectrometry prime The multidimensional path to the Proteome Innovation with Integrity Mass Spectrometry Reach for the Full Potential of Proteomics. Open Your Eyes to PRIME The Proteome is far more complex than was

More information

World Leader in MALDI-QIT-TOF MS Technology

World Leader in MALDI-QIT-TOF MS Technology World Leader in MALDI-QIT-TOF MS Technology Matrix Assisted Laser Desorption/Ionization (MALDI) technology achieves high efficiency ionization by mixing the sample to be analyzed with a laser energy-absorbing

More information

Dr Alexander Henzing

Dr Alexander Henzing Horizon 2020 Health, Demographic Change & Wellbeing EU funding, research and collaboration opportunities for 2016/17 Innovate UK funding opportunities in omics, bridging health and life sciences Dr Alexander

More information

Tutorial for proteome data analysis using the Perseus software platform

Tutorial for proteome data analysis using the Perseus software platform Tutorial for proteome data analysis using the Perseus software platform Laboratory of Mass Spectrometry, LNBio, CNPEM Tutorial version 1.0, January 2014. Note: This tutorial was written based on the information

More information

Simultaneous qualitative and quantitative analysis using the Agilent 6540 Accurate-Mass Q-TOF

Simultaneous qualitative and quantitative analysis using the Agilent 6540 Accurate-Mass Q-TOF Simultaneous qualitative and quantitative analysis using the Agilent 654 Accurate-Mass Q-TOF Technical Overview Authors Pat Perkins Anabel Fandino Lester Taylor Agilent Technologies, Inc. Santa Clara,

More information

biopharmaceuticals Join the sweet revolution in Thermo Scientific Glycan Analysis for Biotherapeutics

biopharmaceuticals Join the sweet revolution in Thermo Scientific Glycan Analysis for Biotherapeutics Thermo Scientific Glycan Analysis for Biotherapeutics Join the sweet revolution in biopharmaceuticals Intact Glycoproteins Glycopeptides Free Glycans Monosacccharides MEETING THE CHALLENGES of Glycan Characterization

More information

RapidFire High-throughput MS technology. Enhancing Drug Discovery Turning Mass Specs into Plate Readers

RapidFire High-throughput MS technology. Enhancing Drug Discovery Turning Mass Specs into Plate Readers RapidFire High-throughput MS technology Enhancing Drug Discovery Turning Mass Specs into Plate Readers 1 Drug Discovery with RapidFire Target Selection High-throughput Target Screening (HTS) Lead Optimization

More information

Henry Shion, Robert Birdsall, Steve Cubbedge, and Weibin Chen Waters Corporation, Milford, MA, USA APPLICATION BENEFITS INTRODUCTION WATERS SOLUTIONS

Henry Shion, Robert Birdsall, Steve Cubbedge, and Weibin Chen Waters Corporation, Milford, MA, USA APPLICATION BENEFITS INTRODUCTION WATERS SOLUTIONS Development of Integrated Informatics Workflows for the Automated Assessment of Comparability for Antibody Drug Conjugates (ADCs) Using LC-UV and LC-UV/MS Henry Shion, Robert Birdsall, Steve Cubbedge,

More information

2011 Waters Corporation

2011 Waters Corporation 2011 Waters Corporation Waters Overview Introduction to Waters Established in 1958 Publicly traded corporation (NYSE:WAT) $1.84 billion in annual revenue Headquartered in Milford, Massachusetts Manufacturing

More information

Master course KEMM03 Principles of Mass Spectrometric Protein Characterization. Exam

Master course KEMM03 Principles of Mass Spectrometric Protein Characterization. Exam Exam Master course KEMM03 Principles of Mass Spectrometric Protein Characterization 2010-10-29 kl 08.15-13.00 Use a new paper for answering each question! Write your name on each paper! Aids: Mini calculator,

More information

A Streamlined Workflow for Untargeted Metabolomics

A Streamlined Workflow for Untargeted Metabolomics A Streamlined Workflow for Untargeted Metabolomics Employing XCMS plus, a Simultaneous Data Processing and Metabolite Identification Software Package for Rapid Untargeted Metabolite Screening Baljit K.

More information

EKSIGENT EKSPERT NANOLC 400. Unmatched flexibility for low flow LC/MS

EKSIGENT EKSPERT NANOLC 400. Unmatched flexibility for low flow LC/MS EKSIGENT EKSPERT NANOLC 4 Unmatched flexibility for low flow LC/MS EKSIGENT EKSPERT NANOLC 4 Focused ekspertise In 23, Eksigent changed the way scientists looked at nanoscale chromatography with the introduction

More information

The Facts on Equine Drug Testing

The Facts on Equine Drug Testing The Facts on Equine Drug Testing CONTACT Travis Mays, MS Interim Section Head Analytical Chemistry, Drug Testing Laboratory Toxicology Laboratory 979.845.3414 tmays@ LIMITATIONS IN DRUG TESTING While advancements

More information

MRMPilot Software: Accelerating MRM Assay Development for Targeted Quantitative Proteomics

MRMPilot Software: Accelerating MRM Assay Development for Targeted Quantitative Proteomics MRMPilot Software: Accelerating MRM Assay Development for Targeted Quantitative Proteomics With Unique QTRAP and TripleTOF 5600 System Technology Targeted peptide quantification is a rapidly growing application

More information

Monoclonal Antibody Characterization Achieving Higher Throughput and Productivity

Monoclonal Antibody Characterization Achieving Higher Throughput and Productivity Monoclonal Antibody Characterization Achieving Higher Throughput and Productivity Dionex Solutions to Accelerate Monoclonal Antibody R&D and Characterization The throughput and productivity challenge Increasing

More information

Week 9: MS in Space and Proteomics

Week 9: MS in Space and Proteomics Week 9: MS in Space and Proteomics 1 Last Time Detectors Small Molecule Applications, Environmental: (e.g. TWQC) 2 Mass Spectrometry in Space Possibly the coolest application of small molecule MS is in

More information

Thermo Scientific Mass Spectrometric Immunoassay (MSIA)

Thermo Scientific Mass Spectrometric Immunoassay (MSIA) INSTRUCTIONS FOR USE OF PRODUCTS Thermo Scientific Mass Spectrometric Immunoassay (MSIA) Demonstration Protocol for Affinity Purification and Analysis of Human Insulin from Human Plasma Utilizing MSIA

More information

A Hybrid Microchip/Capillary Electrophoresis Mass Spectrometry Platform for Rapid and Ultrasensitive Bioanalysis

A Hybrid Microchip/Capillary Electrophoresis Mass Spectrometry Platform for Rapid and Ultrasensitive Bioanalysis A Hybrid Microchip/Capillary Electrophoresis Mass Spectrometry Platform for Rapid and Ultrasensitive Bioanalysis Ryan Kelly 1, Chenchen Wang, Cheng S. Lee, Richard D. Smith, Keqi Tang 1 Environmental Molecular

More information

Symbol nomenclature for glycan representation

Symbol nomenclature for glycan representation 598 DOI 10.1002/pmic.200900708 Proteomics 2009, 9, 598 599 Symbol nomenclature for glycan representation Ajit Varki 1, Richard D. Cummings 2, Jeffrey D. Esko 1, Hudson H. Freeze, Pamela Stanley 4, Jamey

More information

Method Development of LC-MS/MS Analysis of Aminoglycoside Drugs: Challenges and Solutions

Method Development of LC-MS/MS Analysis of Aminoglycoside Drugs: Challenges and Solutions Method Development of LC-MS/MS Analysis of Aminoglycoside Drugs: Challenges and Solutions authors Angela (Qi) Shen, Ling Morgan, Marcele L. Barroso, and Xin Zhang; Tandem Labs Tuyen Nguyen; Sepracor Inc.

More information

Novel Glycan Column Technology for the LC-MS Analysis of Labeled and Native N-Glycans Released from Proteins and Antibodies

Novel Glycan Column Technology for the LC-MS Analysis of Labeled and Native N-Glycans Released from Proteins and Antibodies Novel Glycan Column Technology for the LC-MS Analysis of Labeled and Native N-Glycans Released from Proteins and Antibodies Udayanath Aich, 1 Ilze Birznieks, 1 Julian Saba, 2 Xiaodong Liu, 1 Rosa Viner,

More information

TotalChrom. Chromatography Data Systems. Streamlining your laboratory workflow

TotalChrom. Chromatography Data Systems. Streamlining your laboratory workflow TotalChrom Chromatography Data Systems Streamlining your laboratory workflow maximize productivity with TotalChrom CDS Acquiring, processing, reporting, reviewing and approving data is a streamlined series

More information

STANFORD UNIVERSITY MASS SPECTROMETRY 333 CAMPUS DR., MUDD 175 STANFORD, CA 94305-5080

STANFORD UNIVERSITY MASS SPECTROMETRY 333 CAMPUS DR., MUDD 175 STANFORD, CA 94305-5080 Training on the ZQ Open access MS Questions? Contact Dr. Allis Chien allis@stanford.edu 650-723-0710 0710 STANFORD UNIVERSITY MASS SPECTROMETRY STANFORD UNIVERSITY MASS SPECTROMETRY 333 CAMPUS DR., MUDD

More information

Selvita Integrated drug discovery collaborations

Selvita Integrated drug discovery collaborations Selvita Integrated drug discovery collaborations Magdalena Żabka Selvita overview Origins Polish biotechnology research company headquartered in Krakow Mission Resources We deliver comprehensive solutions

More information

INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE Q6B. Current Step 4 version

INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE Q6B. Current Step 4 version INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE ICH HARMONISED TRIPARTITE GUIDELINE SPECIFICATIONS: TEST PROCEDURES AND ACCEPTANCE

More information

LABORATÓRIUMI GYAKORLAT SILLABUSZ SYLLABUS OF A PRACTICAL DEMONSTRATION. financed by the program

LABORATÓRIUMI GYAKORLAT SILLABUSZ SYLLABUS OF A PRACTICAL DEMONSTRATION. financed by the program TÁMOP-4.1.1.C-13/1/KONV-2014-0001 projekt Az élettudományi-klinikai felsőoktatás gyakorlatorientált és hallgatóbarát korszerűsítése a vidéki képzőhelyek nemzetközi versenyképességének erősítésére program

More information

American Society for Mass Spectrometry

American Society for Mass Spectrometry American Society for Mass Spectrometry 30 th Asilomar Conference on Mass Spectrometry Advances in Glycomics and Glycoproteomics: Methods and Applications October 10 14, 2014 Asilomar Conference Center

More information

High-Throughput 3-D Chromatography Through Ion Exchange SPE

High-Throughput 3-D Chromatography Through Ion Exchange SPE High-Throughput 3-D Chromatography Through Ion Exchange SPE Application Note 205 Luke Roenneburg and Alan Hamstra (Gilson, Inc.) Introduction 2-dimensional (2-D) separation is the separation of a sample

More information

Analytik von Biopharmazeutika Vom Bioreaktor bis zum finalen Produkt

Analytik von Biopharmazeutika Vom Bioreaktor bis zum finalen Produkt Analytik von Biopharmazeutika Vom Bioreaktor bis zum finalen Produkt Gemeinsames Symposium des PVZ und der DPhG Fachgruppe Arzneimittelkontrolle/Pharmazeutische Analytik Braunschweig, 12. März 2015 Christian

More information

Full Name: Farnoosh Dairpoosh. Permanent Email : F732044@gmail.com. Tel: +49 176 207 045 02

Full Name: Farnoosh Dairpoosh. Permanent Email : F732044@gmail.com. Tel: +49 176 207 045 02 Basic information Full Name: Farnoosh Dairpoosh Permanent Email : F732044@gmail.com Tel: +49 176 207 045 02 Mailing address: Technische Biochemie Campus A1 5 Universität des Saarlandes 66123 Saarbrücken,

More information

How To Develop A Recipe Card

How To Develop A Recipe Card TSNA Method Development Dr Michael Intorp CORESTA Cooperation Center for Scientific Research Relative to Tobacco FDA Center for Tobacco Products Scientific Workshop Tobacco Product Analysis 30 31 July

More information

Proteomic Analysis using Accurate Mass Tags. Gordon Anderson PNNL January 4-5, 2005

Proteomic Analysis using Accurate Mass Tags. Gordon Anderson PNNL January 4-5, 2005 Proteomic Analysis using Accurate Mass Tags Gordon Anderson PNNL January 4-5, 2005 Outline Accurate Mass and Time Tag (AMT) based proteomics Instrumentation Data analysis Data management Challenges 2 Approach

More information

July 31st 2014: PEWS. Control of glycosylation in cell bioprocesses. Mike Butler University of Manitoba CANADA

July 31st 2014: PEWS. Control of glycosylation in cell bioprocesses. Mike Butler University of Manitoba CANADA July 31st 2014: PEWS Control of glycosylation in cell bioprocesses Mike Butler University of Manitoba CANADA Seminar Plan Structure of Mabs Glycosylation of Antibodies effect of dissolved oxygen The secret

More information

Peptide Mapping 101: Essential Tools for Effective Development and Characterization. Part 1:Introduction to Peptide Mapping

Peptide Mapping 101: Essential Tools for Effective Development and Characterization. Part 1:Introduction to Peptide Mapping Thank you for joining us! The Webinar will begin shortly Peptide Mapping 101: Essential Tools for Effective Development and Characterization Part 1:Introduction to Peptide Mapping Stephan M. Koza, Ph.

More information