Robert Ping UITS Research Technologies, Cyberinfrastructure and Service Center Indiana University Pervasive Technology Institute
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1 Cyberinfrastucture for IU Research and Academics Robert Ping, Cyberinfrastructure and Service Center Indiana University Pervasive Technology Institute Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk Digital Library Brown Bag Series Trustees Indiana University 2014
2 Overview (RT) - Changing the way IU uses Cyberinfrastructure RT Service Areas - From Analysis to Visualization and everything in between Analysis and software delivery and support Visualization facilities and services Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 2
3 (Inter)National Cyberinfrastructure *National Science Foundation, A Special Report. Accessed March 31, Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 3
4 Margaret Dolinsky, Associate Professor and Research Scientist H.R. Hope School of Fine Arts, Indiana University Bloomington Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 4
5 RT Services Science Gateways Web interfaces to supercomputers, massive storage, and shared workflows RT works to simplify the usage experience of computational resources for users through nationally funded grid projects. The Science Gateways Group does this in particular by implementing open source software to support science gateway projects. Science Gateways Storage Computation Analysis/ Bio/Health Visualization Campus Software Bridging Education/ Outreach Grant Support Cyber risk Mitigation 5
6 RT Services Science Gateways IU Cyberinfrastructure Gateway the one stop shopping portal for all IU central cyberinfrastructure as well as external resources such as Penguin on Demand, Amazon Web Services, and Microsoft Azure. URL available at and in RT printed overview brochure Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 6
7 RT Services Data Storage High-quality storage services for fast access or large data sets Data Capacitor II Data storage on disk, not backed up Temporary storage of research data purged regularly Large-capacity, high-throughput, high-bandwidth Lustre-based file system Serves all IU campuses Mounted on Big Red II, Quarry, and Mason research computing systems Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 7
8 RT Services Data Storage High-quality storage services for fast access or large data sets Data Capacitor Wide-Area Network (WAN) II Data storage on disk, not backed up Temporary storage of research data purged regularly Allows researchers to access remote data as if stored locally Serves all IU campuses and several research centers throughout the US Makes it easy to share large amount of data among multiple research sites Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 8
9 RT Services Data Storage High-quality storage services for fast access or large data sets Research File System (RFS) Centralized disk storage designed to support researchers Backed up regularly 2 copies (IUB and IUPUI) Open to IU community undergrads/non-iu must have sponsor 100 GB of disk storage Can utilize project areas in file system HIPAA-aligned (does not encrypt stored data individual users responsible) Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 9
10 RT Services Data Storage High-quality storage services for fast access or large data sets Scholarly Data Archive (SDA) Distributed tape storage for large-scale archival/near-line storage Mirrored 2 copies (IUB and IUPUI) Open to IU community undergrads/non-iu must have sponsor 42 PB of tape storage Supports SFTP, HSI, HPSS API HIPAA-aligned (does not encrypt stored data individual users responsible) Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 10
11 RT Services Computation Fast calculations, advanced simulations, and big data analysis Big Red II IU s main system for highperformance parallel computing Owned solely by IU 1 petaflops CPUs/GPUs 3.5 PB of scratch Available through itaccounts.iu.edu Support/consulting available Tours available Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 11
12 RT Services Computation Fast calculations, advanced simulations, and big data analysis Research Database Complex research databases and data applications Supports oracle and MySQL Databases Strictly devoted to research Runs Red Hat Enterprise Linux Examples of research projects currently supported Collaborative Initiative on Fetal Alcohol Spectrum Disorders Indiana Spatial Data Service National Gene Vector Biorepository Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 12
13 RT Services Computation Fast calculations, advanced simulations, and big data analysis Rockhopper Penguin Computing s Penguin-On-Demand (POD) supercomputing cloud appliance Hosted by Indiana University Burst capacity Collaborative effort between Penguin Computing and several US institutions Users log into the cluster using SSH Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 13
14 RT Services Computation Fast calculations, advanced simulations, and big data analysis Quarry IU s primary distributed Linux cluster computing environment For research and research instruction use Serves as condominium cluster Runs Red Hat Enterprise Linux Accounts available via the Account Management Service (AMS) Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 14
15 RT Services Computation Fast calculations, advanced simulations, and big data analysis Mason large memory computer cluster Supports data-intensive, high-performance computing tasks Specifically for genome researchers Uses include genome assembly software, large-scale phylogenetic software, and other genome applications Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 15
16 RT Services Spotlight Computation 2/2014 Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 16
17 RT Services Analysis and software delivery and support Tools for analytics and big data research Software and application consulting long term and short term Technical support Software packages like GIS and remote sensing software Purchase software Software licensing Benchmark and evaluate HPC systems Tutorials/Documentation Public software availability Application tuning Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 17
18 RT Services Services for biomedical, biological, and health-related research Clinical, genomic, and HIPAA-aligned services Examples include: The Advanced Biomedical IT Core (ABITC) Open Science Grid, Grid Operations Center Indiana CTSI HUB INResearch I2iConnect Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 18
19 RT Services Services for biomedical, biological, and health-related research The Advanced Biomedical IT Core (ABITC) REDCAP - a HIPAA aligned service to enable Research Electronic Data Capture by allowing research staff to design and deploy research study forms quickly and easily. REDCap may also be used to conduct electronic surveys for research. Alfresco Share - a HIPAA aligned document sharing website meant to empower collaboration. The service is typically used by members of extended research groups to share information, and by groups of researchers during grant-writing. Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 19
20 RT Services Services for biomedical, biological, and health-related research National Center for Genome Analysis Support Consulting for biologists undertaking genome analysis and genomic researchers Genome analysis software Optimization Hardening Enhancement Data storage Results archiving Delivery and assistance in use of supercomputer clusters Funded by the National Science Foundation Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 20
21 RT Services Visualization facilities and services Understanding advanced simulations and big data Project consultation Test and demonstrate new technologies and procedures Tours of IU visualization facilities Facility reservations Vis & Collaboration Theater Virtual Reality Theater Science on a Sphere IQ-Series - Wall/Tilt/Table Digitization & 3D Advanced Media Capture Haptic Interface Systems Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 21
22 RT Services Visualization facilities and services Examples: Digital Golden Book 3D scanning, analysis, Generating Interest in and printing STEM using 3D Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 22
23 Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 23
24 RT Services Campus Bridging: connecting local and national cyberinfrastructure Powerful resources as easy to use as your computer s peripheral devices Examples include: IUPUI researchers who are using DC-WAN II to transfer data that s local to their laboratory to the HPC systems at IUB Research Database Complex Web Services GitHub Enterprise Open Source Mirror Red Hat Enterprise Linux Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 24
25 RT Services Education and Outreach Can help you figure out which RT services might benefit your research and will help with planning events regarding IU Cyberinfrastructure K-12 outreach activities Ready, Set, Robots! In-person classes and workshops InfoShares tailored to your campus, department, class Tours of facilities like the Data Center or Science on a Sphere On-line tutorials and workshops Represent IU at conferences and within HPC organizations Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 25
26 RT Services Digital Humanities Provides support to all service areas with an emphasis on digital humanities. Recently added brand new service! Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 26
27 RT Services Grant support and custom fee-based services Helps with proposals that require cyberinfrastructure. Application development and custom programming for a fee. Data Management Plans Facilities Statements Letters of Support Application Development Custom programming Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 27
28 The Grant/Data Life Cycle Pre-Grant Preliminary Investigation Cyberinfrastructure Design Proposal Proposal Prep Budget Funding Execution Data Acquisition Data Analysis/ Simulation Data Management Data Sharing Data Visualization Renewal Post-Grant Data Publishing Data Archival Data Disposal Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 28
29 RT Services Services in support of cyber risk mitigation and IT-28 implementation Data Center and Cluster services to secure research data II-Basic and IUFS Scholarly Data Archive (SDA) Condominium computing Cluster as a service Penguin Computing Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 29
30 The Health Insurance Portability and Accountability Act of 1996 (HIPAA) Data Storage Scholarly Data Archive (SDA) Research File System (RFS) Shared and project scratch space Data Capacitor II Research databases RT helps you be proactive and preventative Research Database Complex (RDC) Data Management REDCap Collaboration and document sharing Alfresco Share Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 30
31 Contact us Right here in the library - Every Thursday 1 st Storage and Campus Bridging 2 nd Vis, Grant Support, and Science Gateways 3 rd Medical/bio research, and EOT 4 th Computation and Analysis Sign-up for the CI Newsletter Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 31
32 Contact Information Contact: Robert Ping Education and Outreach Manager Please help us help you: InfoShare Survey Science Storage Computation Analysis/ Bio/Health Visualization Campus Education/ Grant Cyber risk 32
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