MIGUEL GARCÍA REMESAL

Transcription

1 CURRICULUM VITAE (ABBREVIATED) 1. CONTACT MIGUEL GARCÍA REMESAL Associate Professor Departamento de Inteligencia Artificial Escuela Técnica Superior de Ingenieros Informáticos Universidad Politécnica de Madrid Campus de Montegancedo S/N Boadilla del Monte (Madrid) Spain Phone: (+34) Fax: (+34) EDUCATION March 2006 Doctor of Philosophy, Computer Science and Artificial Intelligence, Department of Artificial Intelligence, Facultad de Informática, Universidad Politécnica de Madrid, Madrid (Spain). Thesis topic: Integration of heterogeneous data sources. Supervisor: Dr. Victor Maojo. December 2001 Master of Science, Computer Science. Facultad de Informática, Universidad Politécnica de Madrid, Madrid (Spain).

2 3. TEACHING EXPERIENCE 1. September 2011 Today: Profesor Contratado Doctor (tenured position), Departamento de Inteligencia Artificial, Escuela Técnica Superior de Ingenieros Informáticos, Universidad Politécnica de Madrid, Madrid (Spain). 2. October 2007 September 2011: Profesor Titular de Universidad Interino (non-tenured position), Departamento de Inteligencia Artificial, Escuela Técnica Superior de Ingenieros Informáticos, Universidad Politécnica de Madrid, Madrid (Spain). 4. RESEARCH EXPERIENCE 1. September 2009 Today: Faculty member and researcher, Biomedical Informatics Group, Escula Técnica Superior de Ingenieros Informáticos, Universidad Politécnica de Madrid. Research topic: Text mining and heterogeneous database integration. 2. June 2009 September 2009: Visiting Scholar, Department of Biomedical Informatics, University of Utah. Research topic: use of domain ontologies for heterogeneous database integration, collaborating with Prof. Joyce Mitchell and Prof. Julio Facelli. 3. March 2006 October 2007: Postdoctoral researcher, Biomedical Informatics Group, Facultad de Informática, Universidad Politécnica de Madrid. Research topic: heterogeneous database integration, collaborating in more than 10 european and national research projects. 4. April July 2005: Predoctoral researcher, Department of Computer Science, Rutgers, The State University of New Jersey, Piscataway, NJ (EEUU). Topic: Integration of Textual and Relational Databases. Advisor: Prof. Casimir Kulikowski. 5. January 2002 March 2006: Predoctoral Researcher, Biomedical Informatics Group, Facultad de Informática, Universidad Politécnica de Madrid. Research topic: heterogeneous database integration, working in the INFOGENMED project, funded by the European commission.

3 5. SUPERVISION OF Ph.D. THESES 1. Lisibonny E. Beato Castro. Expected to graduate in Topic: Sentiment analysis in Twitter. Departamento de Lenguajes y Sistemas Informáticos e Ingeniería del Software, Escuela Técnica Superior de Ingenieros Informáticos, Universidad Politécnica de Madrid. 2. Diana de la Iglesia Jiménez. Expected to graduate in Topic: Nanoinformatics. Departamento de Inteligencia Artificial, Escuela Técnica Superior de Ingenieros Informáticos, Universidad Politécnica de Madrid. 3. Guillermo de la Calle Velasco. Expected to graduate in Topic: Text mining methods for biomedical information extraction. Departamento de Inteligencia Artificial, Escuela Técnica Superior de Ingenieros Informáticos, Universidad Politécnica de Madrid. 4. Alberto Anguita Sánchez. Graduated in Topic: A semantic mediation model for heterogeneous database integration. Departamento de Inteligencia Artificial, Facultad de Informática, Universidad Politécnica de Madrid. 5. Luis Martín Martín. Graduated in Topic: Method for conflicts resolution and constraints management in semantic mediation. Departamento de Inteligencia Artificial, Facultad de Informática Universidad Politécnica de Madrid.

4 6. PUBLICATIONS IN PEER-REVIEWED JOURNALS (INDEXED BY ISI WoK) 1. Anguita A, García-Remesal M, de la Iglesia D, Graf N, Maojo V. Toward a view-oriented approach for aligning RDF-based biomedical resources. Methods Inf Med. In press. 2. Anguita A, García-Remesal M, de la Iglesia D, Maojo V. NCBI2RDF: Enabling full RDFbased Access to NCBI databases. Biomed Res Int (formerly J Biomed Biotechnol) 2013;2013: doi: /2013/ Anguita A, Martin L, Garcia-Remesal M, Maojo V. RDFBuilder: A tool to automatically build RDF-based interfaces for MAGE-OM microarray data sources Comput Methods Programs Biomed. 2013; 111(1): doi: /j.cmpb de la Iglesia D, García-Remesal M, de la Calle G, Kulikowski C, Sanz F, Maojo V. The impact of computer science in molecular medicine: enabling high-throughput research. Curr Top Med Chem. 2013;13(5): doi: / García-Remesal M, García-Ruiz A, Pérez-Rey D, de la Iglesia D, Maojo V. Biomed Res Int.(formerly J Biomed Biotechnol) 2013;2013: doi: /2013/ Maojo V, Fritts M, Martin-Sanchez F, De la Iglesia D, Cachau RE, Garcia-Remesal M, Crespo J, Mitchell JA, Anguita A, Baker N, Barreiro JM, Benitez SE, De la Calle G, Facelli JC, Ghazal P, Geissbuhler A, Gonzalez-Nilo F, Graf N, Grangeat P, Hermosilla I, Hussein R, Kern J, Koch S, Legre Y, Lopez-Alonso V, Lopez-Campos G, Milanesi L, Moustakis V, Munteanu C, Otero P, Pazos A, Perez-Rey D, Potamias G, Sanz F, Kulikowski C. Nanoinformatics: developing new computing applications for biomedicine. Comput Sci Eng 2012; 94(6): doi: /S Maojo V, Garcia-Remesal M, Bielza C, Crespo J, Perez-Rey D, Kulikowski C. Biomedical informatics publications: a global perspective: part I: conferences. Methods Inf Med. 2012;51(1): doi: /ME Maojo V, Garcia-Remesal M, Bielza C, Crespo J, Perez-Rey D, Kulikowski C. Biomedical informatics publications: a global perspective: part II: journals. Methods Inf Med. 2012;51(2): doi: /ME

5 9. Perez-Rey D, Jimenez-Castellanos A, Garcia-Remesal M, Crespo J, Maojo V. CDAPubMed: a browser extension to retrieve EHR-based biomedical literature. BMC Med Inform Decis Mak. 2012;12:29. doi: / de la Calle G, García-Remesal M, Nkumu-Mbomio N, Kulikowski C, Maojo V. e-mir2: a public online inventory of medical informatics resources. BMC Med Inform Decis Mak. 2012; 12:82. doi: / Maojo V, Fritts M, de la Iglesia D, Cachau RE, Garcia-Remesal M, Mitchell JA, Kulikowski C. Nanoinformatics: a new area of research in nanomedicine. Int J Nanomedicine. 2012;7: doi: /IJN.S Maojo V, Crespo J, García-Remesal M, de la Iglesia D, Perez-Rey D, Kulikowski C. Biomedical ontologies: toward scientific debate. Methods Inf Med. 2011; 50(3): doi: /ME de la Iglesia D, Maojo V, Chiesa S, Martin-Sanchez F, Kern J, Potamias G, Crespo J, Garcia- Remesal M, Keuchkerian S, Kulikowski C, Mitchell JA. International efforts in nanoinformatics research applied to nanomedicine. Methods Inf Med. 2011; 50(1): doi: /ME García-Remesal M, Cuevas A, Perez-Rey D, Martin L, Anguita A, de la Iglesia D, de la Calle G, Crespo J, Maojo V. PubDNA Finder: A web database linking full-text articles to sequences of nucleic acids. Bioinformatics 2010, Nov 1;26(21): doi: /BIOINFORMATICS/BTQ García-Remesal M, Cuevas A, López-Alonso V, López-Campos G, de la Calle G, de la Iglesia D, Pérez-Rey D, Crespo J, Martín-Sánchez F, Maojo V. A method for automatically extracting infectious disease-related primers and probes from the literature. BMC Bioinformatics 2010, 11:410. doi: / García-Remesal M, Maojo V, Billhardt H, Crespo J. Integration of relational and textual biomedical sources. A pilot experiment using a semi-automated method for logical schema acquisition. Methods Inf Med. 2010; 49(4): doi: /ME de la Calle G, García-Remesal M, Chiesa S, de la Iglesia D, Maojo V. BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature. BMC Bioinformatics. 2009; 10:320. doi: /

6 18. Maojo V, García-Remesal M, Crespo J. Detectors could spot plagiarism in research proposals. Nature. 2008; 456(7218):30. doi: /456030C. 19. Maojo V, Crespo J, de la Calle G, Barreiro J, Garcia-Remesal M. Using web services for linking genomic data to medical information systems. Methods Inf Med. 2007; 46(4): /ME Alonso-Calvo R, Maojo V, Billhardt H, Martin-Sanchez F, García-Remesal M, Pérez-Rey D. An agent- and ontology-based system for integrating public gene, protein, and disease databases. J Biomed Inform. 2007; 40(1): doi: /J.JBI Maojo V, García-Remesal M, Billhardt H, Alonso-Calvo R, Pérez-Rey D, Martín-Sánchez F. Designing new methodologies for integrating biomedical information in clinical trials. Methods Inf Med. 2006;45(2): Factor de impacto 1,684 (ISI/JCR 2006). 22. Pérez-Rey D, Maojo V, García-Remesal M, Alonso-Calvo R, Billhardt H, Martín-Sánchez F, Sousa A. Comput Biol Med. 2006;36(7-8): doi: /J.COMPBIOMED LANGUAGES 1. Spanish: Native proficiency. 2. English: Professional working proficiency. 3. French: Limited working proficiency.