ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 1
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1 ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 1
2 The meaning of e in e-science is electronic enhanced ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 2
3 A search for e-science and health on Google returns 3,060 hits 30,600 hits 306,000 hits ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 3
4 e-science in Health Sílvia D. Olabarriaga Academic Medical Center + Informatics Institute University of Amsterdam
5 Outline Intro e-*, grids, VL-e and all that Health applications in VL-e Virtual Lab for functional MRI Workflow High performance computing Message To Go ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 5
6 Intro e = enhanced carried out by communities that span disciplines, laboratories, organizations and national boundaries. involving geographically distributed and heterogeneous resources. carried out via collaborations in which information and computing technology plays a vital role. Adapted from IEEE International Conference on e-science and Grid Computing ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 6
7 Intro Examples: Local Lab Report xxxx Report xxxx Aassdada aasdasd Patient XXXX Adasdafab vadfaf Date: XXXX Radiology Intranet Medical Physics Home ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 7
8 Intro Examples: Global Government Hospitals Internet Physicians Researchers Farmaceutical Compaies Report xxxx Aassdada Report xxxx aasdasd Adasdafab Patient XXXX vadfaf Date: XXXX Patient ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 8
9 Intro HowTo Transport data Handle large datasets Exchange data Search for data Control user access Account for usage Guarantee privacy Run remote computations Handle large and complex experiments Exchange work practices ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 9
10 Intro e-* & Grids Grids represent one of the key computing paradigms that enable the creation and management of a Cyber-infrastructure for realization of e-almostanything. My favorite definition of grids : It s all about sharing distributed resources and the open protocols that enable it More than technology! ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 10
11 Intro Virtual Laboratory for e-science VL-e Vision Data Intensive Sciences Food Informatics Medical Diagnosis & Imaging Biodiversity Bioinformatics Dutch Telescience Virtual Laboratory Services Grid and Web Services ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 11
12 Intro HowTo..in VL-e Transport data Control user access Account for usage Run remote computations Handle large and complex experiments Handle large data Exchange programs Search for data Grid FTP Reliable File Transfer System Grid Security Interface Virtual Organizations Globus Toolkit EGEE middleware Nimrod-G Workflow management Storage Resource Broker Service Oriented Architecture AIDA (booth #31) ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 12
13 Outline Intro Health applications in VL-e Virtual Lab for functional MRI Workflow High performance computing Message To Go ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 13
14 VL-e Medical VL-e (Medical) Team & Co AMC (SP 1.3) E. Akkerman, J. Alkemade, L. Beenen, M. Caan, H. Gratama van Andel, C. Grimbergen, G. den Heeten, F. Hoefnagels, C. Lavini, J. Luitse, C. Majoie, A. Nederveen, S. Olabarriaga, J. Snel, R. Voorn, F. Vos, R. Willemse Informatics UvA K. Maheshwari, S. Olabarriaga (SP 1.3) A. Belloum, P. de Boer (SP 2.5) R. Belleman, M. Scarpa, A. Ozsoy (SP 2.1) B. Ó Nualláin (SP 2.1) Philips (SP1.3 & P 4) A. Bucur, J. van Leeuwen, H. Obbink, A. Tesanovic R. de Boer, R. van Driel, F. Hoogenraad SARA (SP 4) M. Bouwhuis, B. Heupers, grid-support@sara.nl J. Adriaanse, B. Stolk, E. Seinstra NIKHEF (SP 4) D. van Dok, J. J. Keijser, D.Groep, grid-support@nikhef.nl VUMC (SP 1.3) K. Cover, B. van Dijk, J. Sluijmer, H. Vrenken ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 14
15 VL-e Medical Example 1: e-neuroscience Virtual Lab for Functional MRI Stimulus System MR scanner fmri scan Brain activation map Group Activation Map ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 15
16 VL-e Medical Virtual Lab for fmri Data Acquisition Data Storage Data Access Data Analysis VBrowser Reliable JobRun NIMROD-G File FSL Transfer Image Viewers EGEE middleware Globus Toolkit Storage Resource Broker Grid FTP Grid Security Infrastructure Stimulus System 3 Tesla MRI EEG Computing Clusters Disk Tape Robot ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 16
17 VL-e Medical VL-fMRI: Architecture VL-e PoC (Proof-of-Concept) ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 17
18 VL-e Medical Example 2: Workflow Management Neurosurgery Planning ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 18
19 VL-e Medical Example 2: Workflow Management Neurosurgery Planning ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 19
20 VL-e Medical Example 3: HPC Tracking of White Matter Fibers from Diffusion Tensor Imaging (DTI) ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 20
21 VL-e Medical Example 3: HPC Tracking of White Matter Fibers from Diffusion Tensor Imaging (DTI) ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 21
22 Example N: Future? Researchers impressed by Google's medical diagnoses The Independent, 10 November 2006 Google-like Process For Mammogram Images Speeds Up Computer's Second Opinions Science Daily, July 2006 ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 22
23 ToGo Messages To Go e-science infrastructures are becoming reality VL-e Medical is tasting possibilities for e- Science on Heath Talk to us on booth #21 THANK YOU! ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 23
24 ICT Delta Kenniscongres, 23 May 2007, e-health, S.D. Olabarriaga 24
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