They can be obtained in HQJHQH format directly from the home page at:

Size: px
Start display at page:

Download "They can be obtained in HQJHQH format directly from the home page at: http://www.engene.cnb.uam.es/downloads/kobayashi.dat"

Transcription

1 HQJHQH70 *XLGHG7RXU This document contains a Guided Tour through the HQJHQH platform and it was created for training purposes with respect to the system options and analysis possibilities. It is not intended for training about the biological interpretation of the results. Original data used in this demo correspond to Kobayashi et al. (2001), Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems. J Bacteriol. 183(24): and it is available in the web at: They can be obtained in HQJHQH format directly from the home page at: 1RWH: this file contains a complete demo. However, it will be modified and extended as new algorithms will be available, and as new experience with the system will be reported. Please, submit any recommendation or suggestions to our webmaster from the HQJHQH-home page, or directly to

2 *XLGHG7RXUZLWK.RED\DVLGDWD Once you have enter your 8VHU,GHQWLILFDWLRQ and your 3DVVZRUG, you are on your home directory. Here, or in a another subdirectory, you have to upload your data file ( NRER\DVLGDW for this demo). Remember that the file format must be the HQJHQH format. To upload the file you must specify the data file name and the complete path in the text box next to the Upload button. Alternatively, you can use the Search button to search for the file. After that, click on the Upload button to start uploading. )LJXUH Current Directory list containing all files generated by the system. The uploading process may last a few minutes. The following message appears when the process is successfully finished: )LJXUH Uploaded message Hit the continue button to return to the home directory. Now the kobayashi.dat file appears in the list:

3 )LJXUH: Current Directory list, with the new uploaded file By clicking on the file name you can see all the processes that you can be executed on a data file, as well as the data file information: )LJXUH : kobayashi.dat, with its overview representation (on the left), available operations (in the upper zone) and related information about this file.

4 Let s now start running the different available processes. 3UH3URFHVVLQJDOJRULWKPGDWDVFDOHGE\/RJ By clicking on the 3UHSURFHVVLQJOption on the Pre-Processing panel (see Figure 4), you will be driven to the PreProcessing Parameters page. )LJXUH Pre-processing Parameters Page (Logarithm base =2) The only required parameter is the output data file name without extension (for example, Kob_Log2). Type in the Logarithm Base text box and then click the 3URFHHG button. If the process is successful, you will be taken back to the directory list where a new entry has been added: the new generated file, whose extension is also GDW ( Kob_log2.dat ) You can click the file name to see the new data information. See how the data visualization has changed (due to the nice properties of log transformation). )LJXUHData Visualization of kobayashi scaled data (logarithm base = 2)

5 3UHSURFHVVLQJDOJRULWKPUHPRYHIODWYHFWRUVZKRVHVWDQGDUGGHYLDWLRQLVOHVVWKDQ In the directory list click kok_log2.dat file, and select the 3UHSURFHVVLQJ option again. Then, on the Preprocessing Parameters Page (Figure 5), type kob_3 as the Output Name, 0.5 as the 6WDQGDUG GHYLDWLRQILOWHUand 3URFHHG. Look at the new file (kob_3.dat) information by clicking on the file name. The new generated file has now 708 vectors (genes) that have passed the standard deviation filter. )LJXUH (on the left) Data Visualization of kob_3 file 9DOXHV+LVWRJUDP Select file Kob_3.dat, and click the 9DOXH +LVWRJUDP Option on the Statistical Analysis panel. Specify the output file name only (Kob_4). Then click the 3URFHHG button. )LJXUH Values Histogram Parameters page. The resulting file will have a.vh extension ( kob_4.vh ). When you see it on the directory list, you can click on it to look at its information.

6 )LJXUH: Values Histogram file Information. 3UHSURFHVVLQJDOJRULWKPQRUPDOL]LQJWKHGDWD In the directory list, click kok_3.dat file, and select the 3UHSURFHVVLQJoption again. Then, on the Preprocessing Parameters Page (Figure 5), type kob_5 as the Output Name and select the 1RUPDOL]H Option of the &HQWHULQJParameter and then 3URFHHG. )LJXUH: Preprocessing Parameters: Normalize option. After the data normalization process is finished, you will have a new data file with.dat extension ( kob_5.dat ). The file with the same number of vectors (708), but with normalized expression values. 9DOXHV+LVWRJUDPRQ.REBGDW Repeat the process described in step 3 with the normalized data. Name the output file as Kob_6. And see the differences with the Kob_4.vh file

7 )LJXUH: Values Histogram file Information (normalized data) :RUNLQJZLWKQRWQRUPDOL]HGGDWDILOH.REBGDW +LHUDUFKLFDO&OXVWHULQJSURFHGXUH a) Using Simple Average Linkage and Euclidean Distance Click the kob_3.dat file on the directory list, then select the +LHUDUFKLFDO&OXVWHULQJoption on the Clustering panel. You will go to the Hierarchical Clustering Parameters page. )LJXUH: Hierarchical Clustering Parameters page. Type the Output File Name: kob_3_1. Select the Simple $YHUDJH /LQNDJH option in the Agglomerative Method parameter and the (XFOLGHDQoption of the Distance parameter. Then 3URFHHG. The output file will have an.ht extension ( Kob_3_1.ht )

8 )LJXUH: Kob_3_1.ht hierarchical file view. b) Using Simple Average Linkage and Correlation Distance Click on the kob_3.dat file, then select the +LHUDUFKLFDO&OXVWHULQJoption on the Clustering panel. You will go to the Hierarchical Clustering Parameters page. Similar to the previous example, type the Output File Name: kob_3_2, select the Simple $YHUDJH/LQNDJHoption of the Agglomerative Method parameter and the &RUUHODWLRQoption of the Distance parameter. Then 3URFHHG. The output file has an.ht extension ( Kob_3_2.ht ) )LJXUH: Kob_3_2.ht hierarchical file view. You can now appreciate the differences between both trees, due to different distance metric used (Euclidean versus Correlation).

9 620SURFHGXUH a) Using Euclidean Distance Click on the kob_3.dat file in the directory list, then select the 620 option on the Projection Methods panel. You are driven to the Projection Methods Parameters page. )LJXUH: SOM Parameters page. Type the Output File Name: kob_3_3. The rest of the parameters are set by default, including the Euclidean distance. Then 3URFHHG. The output file has a.map extension ( Kob_3_3.map ). By clicking on it you will see the map visualization. For map files, three or four graphical representations are displayed: the code vectors profiles, the Sammon projection of the code vectors in the map, the sorted expression matrix, and, optionally, the Principal Component Projection (you must first create a.pc file, by clicking on the link Create under the message PC not created, and then review the map file). )LJXUH: The Sammon Projection. )LJXUH: The sorted expression matrix.

10 )LJXUH: The code vectors profiles. )LJXUH: The Principal Components Projection. b) Using Correlation Distance This example is similar to the previous one. You will realize a SOM projection on the same input file, but you must select the Correlation Distance parameter; the output file name will be kob_3_4. Then Proceed. The result is a kob_3_4.map. You can see the data graphical representation by clicking the file name..b0hdqvdojrulwkpfoxvwhuv a) Using Euclidean Distance

11 Click on the kob_3.dat file, then select the.0hdqvoption on the Clustering panel. You are driven to the K-Means Parameters page. )LJXUH: K-Means Parameters page. Type the Output File Name: kob_3_5 and the number of clusters: 10 (both parameters are required). The rest of the parameters are left with the default value (Distance = Euclidean). Then 3URFHHG. The output file has a.cb extension ( Kob_3_5.cb ). By clicking on it you will see the data visualization for the clustering results. Three or four graphical representations of data are displayed: the centroids profiles, the Sammon projection of the centroids, the sorted expression matrix, and, optionally, the Principal Component Projection (you must first create a.pc file, by clicking on the link Create under the message PC not created, and then review the clustering file).. )LJXUH: The Sammon Projection (on the left) and )LJXUH: The sorted expression matrix (on the right).

12 )LJXUH: The code vectors (centroids) profiles. )LJXUH: The Principal Components Projection. b) Using Correlation Distance This example is similar to the previous one. You can execute a K-Means Clustering over the same input file, but now selecting the Correlation Distance parameter; the output file name will be kob_3_6. Then 3URFHHG. The result is a kob_3_6.cb. You can now see the data graphical representation by clicking on the generated file name.

Tutorial for proteome data analysis using the Perseus software platform

Tutorial for proteome data analysis using the Perseus software platform Tutorial for proteome data analysis using the Perseus software platform Laboratory of Mass Spectrometry, LNBio, CNPEM Tutorial version 1.0, January 2014. Note: This tutorial was written based on the information

More information

MultiExperiment Viewer Quickstart Guide

MultiExperiment Viewer Quickstart Guide MultiExperiment Viewer Quickstart Guide Table of Contents: I. Preface - 2 II. Installing MeV - 2 III. Opening a Data Set - 2 IV. Filtering - 6 V. Clustering a. HCL - 8 b. K-means - 11 VI. Modules a. T-test

More information

JustClust User Manual

JustClust User Manual JustClust User Manual Contents 1. Installing JustClust 2. Running JustClust 3. Basic Usage of JustClust 3.1. Creating a Network 3.2. Clustering a Network 3.3. Applying a Layout 3.4. Saving and Loading

More information

Data Mining Clustering (2) Sheets are based on the those provided by Tan, Steinbach, and Kumar. Introduction to Data Mining

Data Mining Clustering (2) Sheets are based on the those provided by Tan, Steinbach, and Kumar. Introduction to Data Mining Data Mining Clustering (2) Toon Calders Sheets are based on the those provided by Tan, Steinbach, and Kumar. Introduction to Data Mining Outline Partitional Clustering Distance-based K-means, K-medoids,

More information

DATA MINING CLUSTER ANALYSIS: BASIC CONCEPTS

DATA MINING CLUSTER ANALYSIS: BASIC CONCEPTS DATA MINING CLUSTER ANALYSIS: BASIC CONCEPTS 1 AND ALGORITHMS Chiara Renso KDD-LAB ISTI- CNR, Pisa, Italy WHAT IS CLUSTER ANALYSIS? Finding groups of objects such that the objects in a group will be similar

More information

Introduction to Clustering

Introduction to Clustering Introduction to Clustering Yumi Kondo Student Seminar LSK301 Sep 25, 2010 Yumi Kondo (University of British Columbia) Introduction to Clustering Sep 25, 2010 1 / 36 Microarray Example N=65 P=1756 Yumi

More information

SPSS Tutorial. AEB 37 / AE 802 Marketing Research Methods Week 7

SPSS Tutorial. AEB 37 / AE 802 Marketing Research Methods Week 7 SPSS Tutorial AEB 37 / AE 802 Marketing Research Methods Week 7 Cluster analysis Lecture / Tutorial outline Cluster analysis Example of cluster analysis Work on the assignment Cluster Analysis It is a

More information

Data Mining Cluster Analysis: Basic Concepts and Algorithms. Lecture Notes for Chapter 8. Introduction to Data Mining

Data Mining Cluster Analysis: Basic Concepts and Algorithms. Lecture Notes for Chapter 8. Introduction to Data Mining Data Mining Cluster Analysis: Basic Concepts and Algorithms Lecture Notes for Chapter 8 Introduction to Data Mining by Tan, Steinbach, Kumar Tan,Steinbach, Kumar Introduction to Data Mining 4/8/2004 Hierarchical

More information

Capture Pro Software FTP Server System Output

Capture Pro Software FTP Server System Output Capture Pro Software FTP Server System Output Overview The Capture Pro Software FTP server will transfer batches and index data (that have been scanned and output to the local PC) to an FTP location accessible

More information

COC131 Data Mining - Clustering

COC131 Data Mining - Clustering COC131 Data Mining - Clustering Martin D. Sykora m.d.sykora@lboro.ac.uk Tutorial 05, Friday 20th March 2009 1. Fire up Weka (Waikako Environment for Knowledge Analysis) software, launch the explorer window

More information

Chapter 6. Using the SQL Server

Chapter 6. Using the SQL Server Chapter 6 Using the SQL Server BC30 Using the SQL Server 1 5/2010 Content 1 Installing and setting up the SQL Server... 3 2 Exporting an SQL database... 7 3 Importing an SQL database... 9 4 Opening the

More information

Creating and Manipulating Spatial Weights

Creating and Manipulating Spatial Weights Creating and Manipulating Spatial Weights Spatial weights are essential for the computation of spatial autocorrelation statistics. In GeoDa, they are also used to implement Spatial Rate smoothing. Weights

More information

K-means Clustering Technique on Search Engine Dataset using Data Mining Tool

K-means Clustering Technique on Search Engine Dataset using Data Mining Tool International Journal of Information and Computation Technology. ISSN 0974-2239 Volume 3, Number 6 (2013), pp. 505-510 International Research Publications House http://www. irphouse.com /ijict.htm K-means

More information

Hierarchical Cluster Analysis Some Basics and Algorithms

Hierarchical Cluster Analysis Some Basics and Algorithms Hierarchical Cluster Analysis Some Basics and Algorithms Nethra Sambamoorthi CRMportals Inc., 11 Bartram Road, Englishtown, NJ 07726 (NOTE: Please use always the latest copy of the document. Click on this

More information

Distances, Clustering, and Classification. Heatmaps

Distances, Clustering, and Classification. Heatmaps Distances, Clustering, and Classification Heatmaps 1 Distance Clustering organizes things that are close into groups What does it mean for two genes to be close? What does it mean for two samples to be

More information

CONTENTS PREFACE 1 INTRODUCTION 1 2 DATA VISUALIZATION 19

CONTENTS PREFACE 1 INTRODUCTION 1 2 DATA VISUALIZATION 19 PREFACE xi 1 INTRODUCTION 1 1.1 Overview 1 1.2 Definition 1 1.3 Preparation 2 1.3.1 Overview 2 1.3.2 Accessing Tabular Data 3 1.3.3 Accessing Unstructured Data 3 1.3.4 Understanding the Variables and Observations

More information

Clustering UE 141 Spring 2013

Clustering UE 141 Spring 2013 Clustering UE 141 Spring 013 Jing Gao SUNY Buffalo 1 Definition of Clustering Finding groups of obects such that the obects in a group will be similar (or related) to one another and different from (or

More information

IT462 Lab 5: Clustering with MS SQL Server

IT462 Lab 5: Clustering with MS SQL Server IT462 Lab 5: Clustering with MS SQL Server This lab should give you the chance to practice some of the data mining techniques you've learned in class. Preliminaries: For this lab, you will use the SQL

More information

Step-by-Step Guide to Bi-Parental Linkage Mapping WHITE PAPER

Step-by-Step Guide to Bi-Parental Linkage Mapping WHITE PAPER Step-by-Step Guide to Bi-Parental Linkage Mapping WHITE PAPER JMP Genomics Step-by-Step Guide to Bi-Parental Linkage Mapping Introduction JMP Genomics offers several tools for the creation of linkage maps

More information

Data Mining. SPSS Clementine 12.0. 1. Clementine Overview. Spring 2010 Instructor: Dr. Masoud Yaghini. Clementine

Data Mining. SPSS Clementine 12.0. 1. Clementine Overview. Spring 2010 Instructor: Dr. Masoud Yaghini. Clementine Data Mining SPSS 12.0 1. Overview Spring 2010 Instructor: Dr. Masoud Yaghini Introduction Types of Models Interface Projects References Outline Introduction Introduction Three of the common data mining

More information

A Demonstration of Hierarchical Clustering

A Demonstration of Hierarchical Clustering Recitation Supplement: Hierarchical Clustering and Principal Component Analysis in SAS November 18, 2002 The Methods In addition to K-means clustering, SAS provides several other types of unsupervised

More information

https://weboffice.edu.pe.ca/

https://weboffice.edu.pe.ca/ NETSTORAGE MANUAL INTRODUCTION Virtual Office will provide you with access to NetStorage, a simple and convenient way to access your network drives through a Web browser. You can access the files on your

More information

Clustering. Adrian Groza. Department of Computer Science Technical University of Cluj-Napoca

Clustering. Adrian Groza. Department of Computer Science Technical University of Cluj-Napoca Clustering Adrian Groza Department of Computer Science Technical University of Cluj-Napoca Outline 1 Cluster Analysis What is Datamining? Cluster Analysis 2 K-means 3 Hierarchical Clustering What is Datamining?

More information

Symantec Client Firewall Policy Migration Guide

Symantec Client Firewall Policy Migration Guide Symantec Client Firewall Policy Migration Guide Installing and using the Symantec Client Firewall Migration Wizard This document includes the following topics: About the Symantec Client Firewall Migration

More information

Clustering. Data Mining. Abraham Otero. Data Mining. Agenda

Clustering. Data Mining. Abraham Otero. Data Mining. Agenda Clustering 1/46 Agenda Introduction Distance K-nearest neighbors Hierarchical clustering Quick reference 2/46 1 Introduction It seems logical that in a new situation we should act in a similar way as in

More information

Machine Learning using MapReduce

Machine Learning using MapReduce Machine Learning using MapReduce What is Machine Learning Machine learning is a subfield of artificial intelligence concerned with techniques that allow computers to improve their outputs based on previous

More information

Example: Document Clustering. Clustering: Definition. Notion of a Cluster can be Ambiguous. Types of Clusterings. Hierarchical Clustering

Example: Document Clustering. Clustering: Definition. Notion of a Cluster can be Ambiguous. Types of Clusterings. Hierarchical Clustering Overview Prognostic Models and Data Mining in Medicine, part I Cluster Analsis What is Cluster Analsis? K-Means Clustering Hierarchical Clustering Cluster Validit Eample: Microarra data analsis 6 Summar

More information

Data Clustering. Dec 2nd, 2013 Kyrylo Bessonov

Data Clustering. Dec 2nd, 2013 Kyrylo Bessonov Data Clustering Dec 2nd, 2013 Kyrylo Bessonov Talk outline Introduction to clustering Types of clustering Supervised Unsupervised Similarity measures Main clustering algorithms k-means Hierarchical Main

More information

CMTRAC. Application Overview APPLICATION DATASHEET

CMTRAC. Application Overview APPLICATION DATASHEET Application Overview CMTRAC APPLICATION DATASHEET CMtrac is an innovative web-based tool for controlling and tracking change processes. This tool provides businesses with a simple mechanism to define and

More information

Hamline University Administrative Computing Page 1

Hamline University Administrative Computing Page 1 User Guide Banner Handout: BUSINESS OBJECTS ENTERPRISE (InfoView) Document: boxi31sp3-infoview.docx Created: 5/11/2011 1:24 PM by Chris Berry; Last Modified: 8/31/2011 1:53 PM Purpose:... 2 Introduction:...

More information

Exiqon Array Software Manual. Quick guide to data extraction from mircury LNA microrna Arrays

Exiqon Array Software Manual. Quick guide to data extraction from mircury LNA microrna Arrays Exiqon Array Software Manual Quick guide to data extraction from mircury LNA microrna Arrays March 2010 Table of contents Introduction Overview...................................................... 3 ImaGene

More information

Advanced Digital Imaging

Advanced Digital Imaging Asset Management System User Interface Cabin River Web Solutions Overview The ADI Asset Management System allows customers and ADI to share digital assets (images and files) in a controlled environment.

More information

Using Data Mining for Mobile Communication Clustering and Characterization

Using Data Mining for Mobile Communication Clustering and Characterization Using Data Mining for Mobile Communication Clustering and Characterization A. Bascacov *, C. Cernazanu ** and M. Marcu ** * Lasting Software, Timisoara, Romania ** Politehnica University of Timisoara/Computer

More information

Technology Business Solutions. Online Backup Manager INSTALLATION

Technology Business Solutions. Online Backup Manager INSTALLATION Technology Business Solutions Online Backup Manager 1. Go to the TBS OBM Software Registration Page Click the TBS Logo Under the select an account type choose the PRO version. Page1 of7 2.) Create a new

More information

Tutorial Segmentation and Classification

Tutorial Segmentation and Classification MARKETING ENGINEERING FOR EXCEL TUTORIAL VERSION 1.0.8 Tutorial Segmentation and Classification Marketing Engineering for Excel is a Microsoft Excel add-in. The software runs from within Microsoft Excel

More information

NAS 253 Introduction to Backup Plan

NAS 253 Introduction to Backup Plan NAS 253 Introduction to Backup Plan Create backup jobs using Backup Plan in Windows A S U S T O R C O L L E G E COURSE OBJECTIVES Upon completion of this course you should be able to: 1. Create backup

More information

Cluster Analysis: Advanced Concepts

Cluster Analysis: Advanced Concepts Cluster Analysis: Advanced Concepts and dalgorithms Dr. Hui Xiong Rutgers University Introduction to Data Mining 08/06/2006 1 Introduction to Data Mining 08/06/2006 1 Outline Prototype-based Fuzzy c-means

More information

COPYRIGHTED MATERIAL. Contents. List of Figures. Acknowledgments

COPYRIGHTED MATERIAL. Contents. List of Figures. Acknowledgments Contents List of Figures Foreword Preface xxv xxiii xv Acknowledgments xxix Chapter 1 Fraud: Detection, Prevention, and Analytics! 1 Introduction 2 Fraud! 2 Fraud Detection and Prevention 10 Big Data for

More information

Statistical Databases and Registers with some datamining

Statistical Databases and Registers with some datamining Unsupervised learning - Statistical Databases and Registers with some datamining a course in Survey Methodology and O cial Statistics Pages in the book: 501-528 Department of Statistics Stockholm University

More information

Structural Health Monitoring Tools (SHMTools)

Structural Health Monitoring Tools (SHMTools) Structural Health Monitoring Tools (SHMTools) Getting Started LANL/UCSD Engineering Institute LA-CC-14-046 c Copyright 2014, Los Alamos National Security, LLC All rights reserved. May 30, 2014 Contents

More information

Unsupervised learning: Clustering

Unsupervised learning: Clustering Unsupervised learning: Clustering Salissou Moutari Centre for Statistical Science and Operational Research CenSSOR 17 th September 2013 Unsupervised learning: Clustering 1/52 Outline 1 Introduction What

More information

Chapter ML:XI (continued)

Chapter ML:XI (continued) Chapter ML:XI (continued) XI. Cluster Analysis Data Mining Overview Cluster Analysis Basics Hierarchical Cluster Analysis Iterative Cluster Analysis Density-Based Cluster Analysis Cluster Evaluation Constrained

More information

Monitoring Pramati Web Server

Monitoring Pramati Web Server Monitoring Pramati Web Server 15 Overview This section describes how to monitor Pramati Web Server from the Console. You can monitor information regarding the running Default Server and Virtual Hosts,

More information

Cluster analysis with SPSS: K-Means Cluster Analysis

Cluster analysis with SPSS: K-Means Cluster Analysis analysis with SPSS: K-Means Analysis analysis is a type of data classification carried out by separating the data into groups. The aim of cluster analysis is to categorize n objects in k (k>1) groups,

More information

An Introduction to Data Mining. Big Data World. Related Fields and Disciplines. What is Data Mining? 2/12/2015

An Introduction to Data Mining. Big Data World. Related Fields and Disciplines. What is Data Mining? 2/12/2015 An Introduction to Data Mining for Wind Power Management Spring 2015 Big Data World Every minute: Google receives over 4 million search queries Facebook users share almost 2.5 million pieces of content

More information

Java Modules for Time Series Analysis

Java Modules for Time Series Analysis Java Modules for Time Series Analysis Agenda Clustering Non-normal distributions Multifactor modeling Implied ratings Time series prediction 1. Clustering + Cluster 1 Synthetic Clustering + Time series

More information

Insight Video Net. LLC. CMS 2.0. Quick Installation Guide

Insight Video Net. LLC. CMS 2.0. Quick Installation Guide Insight Video Net. LLC. CMS 2.0 Quick Installation Guide Table of Contents 1. CMS 2.0 Installation 1.1. Software Required 1.2. Create Default Directories 1.3. Create Upload User Account 1.4. Installing

More information

Clustering. 15-381 Artificial Intelligence Henry Lin. Organizing data into clusters such that there is

Clustering. 15-381 Artificial Intelligence Henry Lin. Organizing data into clusters such that there is Clustering 15-381 Artificial Intelligence Henry Lin Modified from excellent slides of Eamonn Keogh, Ziv Bar-Joseph, and Andrew Moore What is Clustering? Organizing data into clusters such that there is

More information

Follow these procedures for QuickBooks Direct or File Integration: Section 1: Direct QuickBooks Integration [Export, Import or Both]

Follow these procedures for QuickBooks Direct or File Integration: Section 1: Direct QuickBooks Integration [Export, Import or Both] Follow these procedures for QuickBooks Direct or File Integration: Section 1: Direct QuickBooks Integration [Export, Import or Both] Part A - Configuration Step 1. During installation of the Amano Time

More information

The Virtual Desktop. User s Guide

The Virtual Desktop. User s Guide The Virtual Desktop User s Guide Version 1.0 18 April, 2000 Table of contents 1. Registration... 2 2. Logging In... 4 3. Main Desktop... 5 3.1. Changing Information... 6 3.2. Selecting a File... 8 3.3.

More information

Cluster software and Java TreeView

Cluster software and Java TreeView Cluster software and Java TreeView To download the software: http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm http://bonsai.hgc.jp/~mdehoon/software/cluster/manual/treeview.html Cluster 3.0

More information

Montefiore Portal Quick Reference Guide

Montefiore Portal Quick Reference Guide Montefiore Portal Quick Reference Guide Montefiore s remote portal allows users to securely access Windows applications, file shares, internal web applications, and more. To use the Portal, you must already

More information

Chapter 20: Data Analysis

Chapter 20: Data Analysis Chapter 20: Data Analysis Database System Concepts, 6 th Ed. See www.db-book.com for conditions on re-use Chapter 20: Data Analysis Decision Support Systems Data Warehousing Data Mining Classification

More information

. Learn the number of classes and the structure of each class using similarity between unlabeled training patterns

. Learn the number of classes and the structure of each class using similarity between unlabeled training patterns Outline Part 1: of data clustering Non-Supervised Learning and Clustering : Problem formulation cluster analysis : Taxonomies of Clustering Techniques : Data types and Proximity Measures : Difficulties

More information

ARTIFICIAL INTELLIGENCE (CSCU9YE) LECTURE 6: MACHINE LEARNING 2: UNSUPERVISED LEARNING (CLUSTERING)

ARTIFICIAL INTELLIGENCE (CSCU9YE) LECTURE 6: MACHINE LEARNING 2: UNSUPERVISED LEARNING (CLUSTERING) ARTIFICIAL INTELLIGENCE (CSCU9YE) LECTURE 6: MACHINE LEARNING 2: UNSUPERVISED LEARNING (CLUSTERING) Gabriela Ochoa http://www.cs.stir.ac.uk/~goc/ OUTLINE Preliminaries Classification and Clustering Applications

More information

NAS 225 Introduction to FTP Explorer

NAS 225 Introduction to FTP Explorer NAS 225 Introduction to FTP Explorer Connect to FTP sites and transfer files A S U S T O R C O L L E G E COURSE OBJECTIVES Upon completion of this course you should be able to: 1. Use FTP Explorer to connect

More information

Hierarchical Clustering Analysis

Hierarchical Clustering Analysis Hierarchical Clustering Analysis What is Hierarchical Clustering? Hierarchical clustering is used to group similar objects into clusters. In the beginning, each row and/or column is considered a cluster.

More information

UNSUPERVISED MACHINE LEARNING TECHNIQUES IN GENOMICS

UNSUPERVISED MACHINE LEARNING TECHNIQUES IN GENOMICS UNSUPERVISED MACHINE LEARNING TECHNIQUES IN GENOMICS Dwijesh C. Mishra I.A.S.R.I., Library Avenue, New Delhi-110 012 dcmishra@iasri.res.in What is Learning? "Learning denotes changes in a system that enable

More information

Using SSH Secure FTP Client INFORMATION TECHNOLOGY SERVICES California State University, Los Angeles Version 2.0 Fall 2008.

Using SSH Secure FTP Client INFORMATION TECHNOLOGY SERVICES California State University, Los Angeles Version 2.0 Fall 2008. Using SSH Secure FTP Client INFORMATION TECHNOLOGY SERVICES California State University, Los Angeles Version 2.0 Fall 2008 Contents Starting SSH Secure FTP Client... 2 Exploring SSH Secure FTP Client...

More information

Cluster Analysis. Isabel M. Rodrigues. Lisboa, 2014. Instituto Superior Técnico

Cluster Analysis. Isabel M. Rodrigues. Lisboa, 2014. Instituto Superior Técnico Instituto Superior Técnico Lisboa, 2014 Introduction: Cluster analysis What is? Finding groups of objects such that the objects in a group will be similar (or related) to one another and different from

More information

PaperStream Connect. Setup Guide. Version 1.0.0.0. Copyright Fujitsu

PaperStream Connect. Setup Guide. Version 1.0.0.0. Copyright Fujitsu PaperStream Connect Setup Guide Version 1.0.0.0 Copyright Fujitsu 2014 Contents Introduction to PaperStream Connect... 2 Setting up PaperStream Capture to Release to Cloud Services... 3 Selecting a Cloud

More information

SeattleSNPs Interactive Tutorial: Web Tools for Site Selection, Linkage Disequilibrium and Haplotype Analysis

SeattleSNPs Interactive Tutorial: Web Tools for Site Selection, Linkage Disequilibrium and Haplotype Analysis SeattleSNPs Interactive Tutorial: Web Tools for Site Selection, Linkage Disequilibrium and Haplotype Analysis Goal: This tutorial introduces several websites and tools useful for determining linkage disequilibrium

More information

WebFOCUS RStat. RStat. Predict the Future and Make Effective Decisions Today. WebFOCUS RStat

WebFOCUS RStat. RStat. Predict the Future and Make Effective Decisions Today. WebFOCUS RStat Information Builders enables agile information solutions with business intelligence (BI) and integration technologies. WebFOCUS the most widely utilized business intelligence platform connects to any enterprise

More information

Figure 1: Saving Project

Figure 1: Saving Project VISAN Introduction............................... 1 Data Visualization........................... 4 Classification.............................. 7 LDF and QDF.......................... 7 Neural Networks.........................

More information

Capture Pro Software FTP Server Output Format

Capture Pro Software FTP Server Output Format Capture Pro Software FTP Server Output Format Overview The Capture Pro Software FTP server will transfer batches and index data (that have been scanned and output to the local PC) to an FTP location accessible

More information

Medical Information Management & Mining. You Chen Jan,15, 2013 You.chen@vanderbilt.edu

Medical Information Management & Mining. You Chen Jan,15, 2013 You.chen@vanderbilt.edu Medical Information Management & Mining You Chen Jan,15, 2013 You.chen@vanderbilt.edu 1 Trees Building Materials Trees cannot be used to build a house directly. How can we transform trees to building materials?

More information

Data Mining Cluster Analysis: Basic Concepts and Algorithms. Lecture Notes for Chapter 8. Introduction to Data Mining

Data Mining Cluster Analysis: Basic Concepts and Algorithms. Lecture Notes for Chapter 8. Introduction to Data Mining Data Mining Cluster Analsis: Basic Concepts and Algorithms Lecture Notes for Chapter 8 Introduction to Data Mining b Tan, Steinbach, Kumar Tan,Steinbach, Kumar Introduction to Data Mining /8/ What is Cluster

More information

There are a number of different methods that can be used to carry out a cluster analysis; these methods can be classified as follows:

There are a number of different methods that can be used to carry out a cluster analysis; these methods can be classified as follows: Statistics: Rosie Cornish. 2007. 3.1 Cluster Analysis 1 Introduction This handout is designed to provide only a brief introduction to cluster analysis and how it is done. Books giving further details are

More information

ParishSOFT Remote Installation

ParishSOFT Remote Installation Table of Contents Setting up Remote Solution Windows 7 or Vista... 1 Connecting to ParishSOFT... 1 Accessing Your database... 3 Switching to your parish database... 4 Setting up Accounts for users... 5

More information

Technical Support Information No. 201c January 2013

Technical Support Information No. 201c January 2013 Customer Focus Page 1 of 6 Application Personal Computer (APC) Issues on Newer Windows PC Operating Systems Background Application Personal Computer (APC 7.0) software was originally developed as a DOS

More information

-CONTINUE ON NEXT PAGE

-CONTINUE ON NEXT PAGE Page 1 Thank you for taking part in the s Stepping Out to Cure Scleroderma! We appreciate your support of our mission. Here are some instructions to help you send an email message from your Participant

More information

Petrel TIPS&TRICKS from SCM

Petrel TIPS&TRICKS from SCM Petrel TIPS&TRICKS from SCM Knowledge Worth Sharing Histograms and SGS Modeling Histograms are used daily for interpretation, quality control, and modeling in Petrel. This TIPS&TRICKS document briefly

More information

City of St. Petersburg, Florida Fiscal & Budget Transparency Tool User Guide. Last Updated: March 2015

City of St. Petersburg, Florida Fiscal & Budget Transparency Tool User Guide. Last Updated: March 2015 City of St. Petersburg, Florida Fiscal & Budget Transparency Tool User Guide Last Updated: March 2015 St. Petersburg s Fiscal and Budget Transparency Tool allows you to explore budget and historical finances

More information

An Introduction to Microarray Data Analysis

An Introduction to Microarray Data Analysis Chapter An Introduction to Microarray Data Analysis M. Madan Babu Abstract This chapter aims to provide an introduction to the analysis of gene expression data obtained using microarray experiments. It

More information

AHRQ Quality Indicators. MapIT Tool Conversion of ICD9 to ICD10

AHRQ Quality Indicators. MapIT Tool Conversion of ICD9 to ICD10 AHRQ Quality Indicators MapIT Tool Conversion of ICD9 to ICD10 1 MapIT Version 2.1.220 with 2012 and 2013 ICD-9/10 Codes and Mapping Purpose The MapIT tool takes a selected set of ICD-9 codes, applies

More information

Connecting To SOM Network Drives With Windows XP

Connecting To SOM Network Drives With Windows XP Connecting To SOM Network Drives With Windows XP The first step to take is to make sure that you are using the UCSF VPN client when you connect. If you do not have a VPN username and password, you will

More information

Spyglass Portal Manual v.20140214

Spyglass Portal Manual v.20140214 Spyglass Portal Manual v.20140214 Spyglass Portal Manual... 1 Getting Started... 2 Pre- mission... 3 As a user, I want to create and download a mission for the ESP... 3 Define default setting (phasecfg.rb)...

More information

McAfee SIEM Alarms. Setting up and Managing Alarms. Introduction. What does it do? What doesn t it do?

McAfee SIEM Alarms. Setting up and Managing Alarms. Introduction. What does it do? What doesn t it do? McAfee SIEM Alarms Setting up and Managing Alarms Introduction McAfee SIEM provides the ability to send alarms on a multitude of conditions. These alarms allow for users to be notified in near real time

More information

Université de Montpellier 2 Hugo Alatrista-Salas : hugo.alatrista-salas@teledetection.fr

Université de Montpellier 2 Hugo Alatrista-Salas : hugo.alatrista-salas@teledetection.fr Université de Montpellier 2 Hugo Alatrista-Salas : hugo.alatrista-salas@teledetection.fr WEKA Gallirallus Zeland) australis : Endemic bird (New Characteristics Waikato university Weka is a collection

More information

Didacticiel Études de cas

Didacticiel Études de cas 1 Theme Data Mining with R The rattle package. R (http://www.r project.org/) is one of the most exciting free data mining software projects of these last years. Its popularity is completely justified (see

More information

Hadoop SNS. renren.com. Saturday, December 3, 11

Hadoop SNS. renren.com. Saturday, December 3, 11 Hadoop SNS renren.com Saturday, December 3, 11 2.2 190 40 Saturday, December 3, 11 Saturday, December 3, 11 Saturday, December 3, 11 Saturday, December 3, 11 Saturday, December 3, 11 Saturday, December

More information

Data Mining Project Report. Document Clustering. Meryem Uzun-Per

Data Mining Project Report. Document Clustering. Meryem Uzun-Per Data Mining Project Report Document Clustering Meryem Uzun-Per 504112506 Table of Content Table of Content... 2 1. Project Definition... 3 2. Literature Survey... 3 3. Methods... 4 3.1. K-means algorithm...

More information

ProjectWise Explorer V8i User Manual for Subconsultants & Team Members

ProjectWise Explorer V8i User Manual for Subconsultants & Team Members ProjectWise Explorer V8i User Manual for Subconsultants & Team Members submitted to Michael Baker International Subconsultants & Team Members submitted by Michael Baker International ProjectWise Support

More information

Tutorial - PEST. Visual MODFLOW Flex. Integrated Conceptual & Numerical Groundwater Modeling

Tutorial - PEST. Visual MODFLOW Flex. Integrated Conceptual & Numerical Groundwater Modeling Tutorial - PEST Visual MODFLOW Flex Integrated Conceptual & Numerical Groundwater Modeling PEST with Pilot Points Tutorial This exercise demonstrates some of the advanced and exiting opportunities for

More information

Echidna: Efficient Clustering of Hierarchical Data for Network Traffic Analysis

Echidna: Efficient Clustering of Hierarchical Data for Network Traffic Analysis Echidna: Efficient Clustering of Hierarchical Data for Network Traffic Analysis Abdun Mahmood, Christopher Leckie, Parampalli Udaya Department of Computer Science and Software Engineering University of

More information

DeCyder Extended Data Analysis module Version 1.0

DeCyder Extended Data Analysis module Version 1.0 GE Healthcare DeCyder Extended Data Analysis module Version 1.0 Module for DeCyder 2D version 6.5 User Manual Contents 1 Introduction 1.1 Introduction... 7 1.2 The DeCyder EDA User Manual... 9 1.3 Getting

More information

Content Management System

Content Management System Content Management System XT-CMS + XARA Guide & Tutorial The purpose of this guide and tutorial is to show how to use XT-CMS with web pages exported from Xara. Both Xara Web Designer and Xara Designer

More information

A QUICK OVERVIEW OF THE OMNeT++ IDE

A QUICK OVERVIEW OF THE OMNeT++ IDE Introduction A QUICK OVERVIEW OF THE OMNeT++ IDE The OMNeT++ 4.x Integrated Development Environment is based on the Eclipse platform, and extends it with new editors, views, wizards, and additional functionality.

More information

Using Internet or Windows Explorer to Upload Your Site

Using Internet or Windows Explorer to Upload Your Site Using Internet or Windows Explorer to Upload Your Site This article briefly describes what an FTP client is and how to use Internet Explorer or Windows Explorer to upload your Web site to your hosting

More information

Qualtrics Survey Software. Create an Account

Qualtrics Survey Software. Create an Account Qualtrics Survey Software Qualtrics is online survey software with the ability to create and distribute surveys, quizzes, and polls. Katz and CBA faculty, staff, and students may create accounts. There

More information

PLESK 7 NEW FEATURES HOW-TO RESOURCES

PLESK 7 NEW FEATURES HOW-TO RESOURCES PLESK 7 NEW FEATURES HOW-TO RESOURCES Copyright (C) 1999-2004 SWsoft, Inc. All rights reserved. Distribution of this work or derivative of this work in any form is prohibited unless prior written permission

More information

Publishing Geoprocessing Services Tutorial

Publishing Geoprocessing Services Tutorial Publishing Geoprocessing Services Tutorial Copyright 1995-2010 Esri All rights reserved. Table of Contents Tutorial: Publishing a geoprocessing service........................ 3 Copyright 1995-2010 ESRI,

More information

Consumption of OData Services of Open Items Analytics Dashboard using SAP Predictive Analysis

Consumption of OData Services of Open Items Analytics Dashboard using SAP Predictive Analysis Consumption of OData Services of Open Items Analytics Dashboard using SAP Predictive Analysis (Version 1.17) For validation Document version 0.1 7/7/2014 Contents What is SAP Predictive Analytics?... 3

More information

This exam contains 13 pages (including this cover page) and 18 questions. Check to see if any pages are missing.

This exam contains 13 pages (including this cover page) and 18 questions. Check to see if any pages are missing. Big Data Processing 2013-2014 Q2 April 7, 2014 (Resit) Lecturer: Claudia Hauff Time Limit: 180 Minutes Name: Answer the questions in the spaces provided on this exam. If you run out of room for an answer,

More information

Online Performance Reviews with PeopleAdmin

Online Performance Reviews with PeopleAdmin Online Performance Reviews with PeopleAdmin Employee Guide This detailed guide is designed to help you, the employee, navigate the online Performance Communication Process using PeopleAdmin. Included in

More information

Using CyTOF Data with FlowJo Version 10.0.7. Revised 2/3/14

Using CyTOF Data with FlowJo Version 10.0.7. Revised 2/3/14 Using CyTOF Data with FlowJo Version 10.0.7 Revised 2/3/14 Table of Contents 1. Background 2. Scaling and Display Preferences 2.1 Cytometer Based Preferences 2.2 Useful Display Preferences 3. Scale and

More information

Test Note Phone Manager Deployment Windows Group Policy Sever 2003 and XP SPII Clients

Test Note Phone Manager Deployment Windows Group Policy Sever 2003 and XP SPII Clients Test Note Phone Manager Deployment Windows Group Policy Sever 2003 and XP SPII Clients Note: I have only tested these procedures on Server 2003 SP1 (DC) and XP SPII client, in a controlled lab environment,

More information

TIBCO Spotfire Business Author Essentials Quick Reference Guide. Table of contents:

TIBCO Spotfire Business Author Essentials Quick Reference Guide. Table of contents: Table of contents: Access Data for Analysis Data file types Format assumptions Data from Excel Information links Add multiple data tables Create & Interpret Visualizations Table Pie Chart Cross Table Treemap

More information

REMOTELY ACCESS YOUR FILES WITH THE FLAGLER FILECONNECT SYSTEM

REMOTELY ACCESS YOUR FILES WITH THE FLAGLER FILECONNECT SYSTEM REMOTELY ACCESS YOUR FILES WITH THE FLAGLER FILECONNECT SYSTEM This document explains the various ways to connect to your network files and group share data. In addition, staff and full-time faculty are

More information

Listed below are the common process in creating a new content type, and listing a summary of all contents via view and/or panel custom page.

Listed below are the common process in creating a new content type, and listing a summary of all contents via view and/or panel custom page. Why Features? Basically, in Drupal, one has to undergo series of configurations to be able to create content type, views and/or panels, etc. depending on the functionality one wants to achieve. For a single

More information