MareNostrum: Building and running the system - Lisbon, August 29th, 2005
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1 MareNostrum Building and running the system Lisbon, August 29th, 2005 Sergi Girona Operations Head History: Three Rivers Project IBM project Objective Bring IBM Power Systems back into the Top5 list Push forward Linux on Power Scale-out Strategy Find a willing partner to deploy bleeding edge technologies in an open collaborative environment Research university preferred. Integrate a complete supercluster architecture optimized for cost/performance using latest available technologies for interconnect, storage, and software Goals Get system into Top500 list by SC2004 in Pittsburgh PA, hence the name. Complete installation in 11/04 and system acceptance in 1H05
2 History: UPC CEPBA ( ) Research and service center within the Technical University of Catalonia (UPC) Active in the European projects context Research Computer architecture Basic HPC system software and tools Data bases CIRI ( ) R&D partnership agreement between UPC and IBM Research cooperation between CEPBA and IBM Index History Barcelona Supercomputing Center Centro Nacional de Supercomputación MareNostrum description Building the infrastructure Setting up the system Running the system
3 Barcelona Supercomputing Center Mission Investigate, develop and manage technology to facilitate the advancement of science. Objectives Operate national supercomputing facility R&D in Supercomputing and Computer Architecture. Collaborate in R&D e-science Consortium the Spanish Government (MEC) the Catalonian Government (DURSI) the Technical University of Catalonia (UPC) IT research and development projects Deep Computing Continuation of CEPBA (European Center for Parallelism in Barcelona) research lines in Deep Computing: Tools for performance analysis. Programming models. Operating Systems. Grid Computing and Clusters. Complex Systems & e-business. Parallelization of applications.
4 IT research and development projects Computer Architecture Superscalar and VLIW processor scalability to exploit higher instruction level parallelism. Microarchitecture techniques to reduce power and energy consumption. Vector co-processors to exploit data level parallelism, and application specific coprocessors. Quality of Service in multithreaded environments to exploit thread level parallelism. Profiling and optimization techniques to optimize the performance of existing applications. Life Science projects Genomic analysis. Data mining of biological databases. Systems biology. Prediction of protein fold. Study of molecular interactions and enzymatic mechanisms and drug design
5 Earth Science projects Forecasting of air quality and concentrations of gaseous photochemical pollutants (e.g. troposphere ozone) and particulate matter. Transport of Saharan dust (outbreaks) from North Africa toward the European continent and its contribution to PM levels. Modeling the climate change. This area of research is divided into: Interaction of air quality and climate change issues (forcing of climate change). Impact and consequences of climate change on a European scale Services Computational Services: Offering our parallel machines computational power. Training: Organizing technical seminars, conferences and focused courses. Technology Transfer: Carrying out projects for industry as well as to cover our academic research and internal service needs.
6 MareNostrum: Some current applications Isabel Campos Plasencia University of Zaragoza Fusion Group Research of nuclear fusion materials Follow-up of crystal particles Javier Jiménez Sendín Technical University of Madrid Turbulent channel simulation with Reynold numbers of friction of 2000 Modesto Orozco National Institute Nacional of Bioinformatics Molecular dynamics of all representative proteins DNA unfolding simulation Markus Uhlmann CIEMAT Direct Numerical Simulation of Turbulent Flow With Suspended Solid Particles Gustavo Yepes Alonso Autonomous University of Madrid Hydrodynamic simulations in Cosmology Simulation of a universe volume of 500 Mpc (1.500 millionslight year) Opportunities Access Committee Research groups from Spain Mechanism to promote cooperation with Europe, European projects Infrastructure: Mobility: DEISA HPC-Europa Call for researchers
7 Index History Barcelona Supercomputing Center Centro Nacional de Supercomputación MareNostrum description Building the infrastructure Setting up the system Running the system MareNostrum PowerPC 970 FX processors way nodes Peak Performance TFlops 9.6 TB of Memory 4 GB per node 236 TB Storage Capacity 3 networks Myrinet Gigabit TF DP (64-bit) 84.7 TF SP (32-bit) Tops (8-bit) 10/100 Ethernet Operating System: Linux Linux 2.6 (SuSE)
8 MareNostrum: Overall system description 29 Compute Racks (RC01-RC29) 171 BC chassis w/opm and gigabit ether switch 2392 JS20+ nodes w/myrinet daughter card 4 Myrinet Racks (RM01-RM04) 10 clos myrinet switches 2 Myrinet spines 1280s 7 Storage Server Racks (RS01-RS07) 40 p615 storage servers 6/rack 20 FastT 100 3/rack 20 EXP100 3/rack 1 Operations Rack (RH01) 7316-TF3 display 2 p615 mgmt nodes 2 HMC model 7315-CR2 3 Remote Async Nodes 3 Cisco BC chassis (BCIO) 1 Gigabit Network Racks 1 Force10 E600 for Gb network 4 Cisco port for 10/100 network Environmental Individual Frames Composite Compute 1200 Kg 21.6 KWatts BTUs/hr * 7U chassis Kg 626,4 KWatts BTUs/hr Storage 440 Kg 6 KWatts BTUs/hr Kg 42 KWatts BTUs/hr Management 420 Kg 1.5 KWatts 5050 BTUs/hr Kg 1.5 KWatts 5050 BTUs/hr Myrinet 40 Kg 1.4KWatts 4 12 * 14U chassis 480 Kg 16,8 Kwatts Switch 128 Kg 5 KWatts 16,037BTU/hr Kg 10 Kwatts 32 BTUs/h TOTAL Weight Power Heat AC Required Space Kg 696,7 Kwatts Over 2 million BTUs/hr 180 Tons AC 160 sq meters
9 Hardware: PPC970FX PPC GHz: 64 bit PowerPC implementation 90 nm 42W + altivec VMX extensions Featuring 10 instr. issue 10 pipelined functional units L1: 64KB Instruction / 32KB data L2 cache: 512KB Support for large pages 16MB leading to 8.8 Gflops peak Blades, blade center and blade center racks JS20 Processor Blade 2-way 2.2 GHz Power PC 970 SMP 4GB memory (512KB L2 cache) Local IDE drive (40 GB) 2x1Gb Ethernet on board Myrinet daughter card Blade Center 14 blades per chassis (7U) 28 processors 56GB memory Gigabit ethernet switch 6 chassis in a rack (42U) 168 processors 336GB memory
10 29 bladecenter 1350 xseriesracks (RC01-RC29) BladeCenter(7U) Box Summary per rack 6 Blade Center Chassis Cabling External 6 10/100 cat5 from MM 6 Gb from ESM to E LC cables to myrinet switch Internal 24 OPM cables to 84 LC cables BladeCenter(7U) BladeCenter(7U) BladeCenter(7U) BladeCenter(7U) BladeCenter(7U) Myrinet racks 10 switches Interconnect up to 256 Blades Connect to Spine (64 ports) 2 Spine 1280 Interconnect up to 10 switches Monitoring using 10/100 connection
11 Myrinet racks Spine 1280 Spine to Spine Spine Blades or Storage servers 320 from Clos Myrinet Spine 1280 Spine Links 256 links (1 to each node) 250MB/s each direction
12 Gb Subsystem: Force 10 E600 Interconnection of Blade Centers Used for system boot of every blade center 212 internal network cables 179 for blades 42 for p connection available to external connection Gb Ethernet Blade Center GbE Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center Blade Center
13 Storage nodes Total of 20 storage nodes, 20 x 7 TBytes Each storage node 2xP615 FastT100 EXP100 Cabling per node 2 Myrinet 2 Gb to Force10 E /100 cat5 to Cisco 1 Serial P615 P615 FastT100 EXP100 P615 P615 FastT100 EXP100 P615 P615 FastT100 EXP100 Storage node Myrinet GbE Myrinet GbE p615 p615 2 CPUs Fiberchannel (250MB/s) FAST-T100 EXP100 Controller 300MB/s GB drives 3.5TB 5 LUN RAID5 3 hot spare disks sata drawer GB drives 3.5TB
14 Index History Barcelona Supercomputing Center Centro Nacional de Supercomputación MareNostrum description Building the infrastructure Setting up the system Running the system Location
15 MareNostrum Floorplan Blade centers Myrinet racks Storage servers Operations rack Gigabit switch 10/100 switches MareNostrum Floorplan Glass Box: x 9.04 x 4.97 m False floor: 0.97 m Area: 170m2 Volume: 660m m3 Steel: 26 tons Glass: 19 tons
16 Service The hole 15.5 x 16 x 5.4 m Power External AC Power 3 transformers from High to Low voltage Machine Air Conditioning + others Redundant UPS Disk servers + networking + some internal AC Generator (diesel) Disk servers + networking + some AC
17 AC 4 External Units 7ºC 12ºC 2 water tanks liters 2 pumps (connected to generator) 10 Internal Units 16ºC 26ºC Air conditioning, power, cabling, fire detection
18 Site preparation The movie From July 7th to October 20 th, 2005
19 Index History Barcelona Supercomputing Center Centro Nacional de Supercomputación MareNostrum description Building the infrastructure Setting up the system Running the system Mounting the system From November 27th to December 7 th, 2005
20 Site preparation Site preparation
21 Site preparation Cables Myrinet 172* fibers (25 meters) Near 61 km Gigabit and Ethernet (x2) 212 cupper (25 meters) 5,3 km Power Blade Center rack: 4 * 29 Disk server rack: 3 * 7 Myrinet rack: 6 * 4
22 Index History Barcelona Supercomputing Center Centro Nacional de Supercomputación MareNostrum description Building the infrastructure Setting up the system Running the system Software Diskless boot 2 mins. 1 node 15 mins. Linux 2.6 SuSE Each P615, using their SCSI disks, hosts via NFS Root file system Var file system for 40 blades
23 Software GPFS Basic shared file system Home, projects, scratch, apps Scalability Largest tested site ever: 1100 nodes Testbed till 2406 Through GbE Software LoadLeveler Scalability: Official: 1 job 128 nodes Tested: 400 New version soon Alternative: Slurm
24 Software Ganglia System monitoring Thank you!
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