Le cloud IFB et son instance Galaxy
|
|
- Amelia Conley
- 8 years ago
- Views:
Transcription
1 Le cloud IFB et son instance Galaxy Christophe BLANCHET Institut Français de Bioinformatique - IFB French Institute of Bioinformatics - ELIXIR-FR CNRS UMS Gif-sur-Yvette - FRANCE Ecole Bioinformatique Aviesan 28 Septembre 2015, Roscoff
2 Experimental data in life sciences (FR) French national platforms (GIS IBISA) Nb Cellular imaging 19 Genomic, Transcriptomic 16 Proteomic 13 French NGS platforms Structural biology, biophysic 11 NGS C BI PRO Source: omicsmaps.com NGS IMG PRO NGS BI C Biological platform (Genomics, IMaGing, PROteomics...) BI C Bioinformatics center Cloud resources Scientists BI IMG PRO NGS BI C PRO IMG C C Un déluge de donnée. Blanchet C. et Collin O., 2011, Biofutur, 323: PRO Regional centers distribute the load in terms of computing and storage, and provide better interactions with scientists Des sites intermédiaires permettent de répartir la charge en terme de stockage et de puissance de calcul tout en assurant une meilleure proximité avec les scientifiques 2
3 A lot of bioinforma-cs tools tools BLAST FastA OMSSA ClustalW2 SSearch PeptideShaker ARIA BWA X!tandem HMMer TopHat samtools Galaxy Clustal Muscle fastqc Omega R ABYSS ARIA 2.3 Bioconductor 2.11 biomaj BLAST Blat 35 Bowtie Bowtie beta7 BWA BWA CAP3 CD-HIT Clustal Omega CLUSTALW 2.1 Cufflinks Cutadapt E-SURGE Exonerate express FastA 3.6 FastQC Galaxy portal GATK HMMer 3.0 ImageJ 1.48 khmer 1.1 M-SURGE MEME 4.7 MMSEQ a Mobyle MODAL MultAlin MUSCLE neo4j Oases OMSSA PeptideShaker phyml 3.1 PREDATOR proline python 2.7 R 2.13 R R R-studio Ray 1.3 RSAT samtools Samtools 1.1 SearchGUI SeqClean Shiny Stacks STAR 2.4.0f1 SuMo v1 TGICL TopHat trim_galore Trinity U-CARE VCFtools Velvet X!tandem XPLOR-NIH
4 Many interfaces 4
5 The French Ins-tute of Bioinforma-cs and its e- infrastructure 5
6 IFB - Ins-tut Français de Bioinforma-que IFB, the French distributed infrastructure for life-science information Mission : to make available core bioinformatics resources to the national/international life science research community. To provide support for national biology programs To provide an IT infrastructure devoted to management and analysis of biological data To act as a middleman between the life science community and the bioinformatics/ computer science research community CNRS UMS3601. Avenue de la Terrasse, Bât Gif-sur-Yvette ELIXIR French Node The European distributed infrastructure for lifescience information To optimize the interactions and coordination between the national level and ELIXIR and other ESFRI infrastructures in biomedical and environmental field, To promote consistency and complementarities between the components offered by the ELIXIR French node and those of other European nodes 6
7 IFB e- Infrastructure Mission : to provide core bioinformatics resources to the life science research community. To set up a French IT infrastructure (cloud) devoted to management and analysis of biological data To provide hardware, data collections and bioinformatics tools To collaborate with international infrastructure (ELIXIR) Current resources A national hub : IFB-core IT resources hosted at CNRS IDRIS SC center A network of regional centers 32 bioinformatics platforms - 15,000 cores - 5 PB Two running clouds : IFB-core and GenOuest Create a federation of clouds for life sciences C C 7
8 Virtualisa-on Virtual machines 1 N } } App App Application OS Matériel P R S Re OS Matériel P R S Re Système d exploitation Hyperviseur Matériel Proc. RAM Stock. Rés. Matériel Proc. RAM Stock. Rés. Physical server 8
9 IFB- core s cloud IFB-core # Compute Cores # TB Storage # TB RAM Max VM size Technology Location Pilot c 256GB StratusLab CNRS-IDRIS, Paris 2016-S1 3, ?144c 3TB? StratusLab ,000 2,000 -?? StratusLab CNRS-IDRIS, Paris CNRS-IDRIS, Paris NGS, imaging, statistics, PaaS IaaS launch jobs Scientists RENATER 10giga SaaS Frontend Master Virtualization Layer Shared FS Workers Web portal Pdisk storage iscsi 10giga eth IDRIS CNRS SC-center 10giga eth Cloud Hypervisors - std nodes: 32c 128GB - bigmem nodes: 40c 256GB 9
10 Provide scien-sts with bioinforma-cs resources - data and tools - as cloud appliances 10
11 Create bioinforma-cs appliances VM 1 VM n Application Application OS OS HW HW Hypervisor HW tools BLAST FastA OMSSA ClustalW2 SSearch PeptideShaker ARIA BWA X!tandem HMMer TopHat samtools Galaxy Clustal Muscle fastqc Omega Create new cloud services Virtual Machines R + Linux system Bioinformatics Marketplace Appliance? predefined virtual machine including tools, pipeline,recipes Ready to run Appliance annotation Title Description + (w. controlled voc.) Topics Tools Contact Developer(s) and maintainer(s)! Structures Sequences Proteomics Galaxy... 11
12 Remote desktop IFB s bioinforma-cs appliances Proteomics Imaging Web Galaxy MODAL Eco Pop Galaxy Galaxy RADseq Galaxy AVIESAN 2015 BioDataCloud IGV Scientific apps RSAT z PhyML MacSyFinder SynBioWatch R CLI statistics biocompute Node Aria biohadoop Utilities biodata BioMaj BlobSeer biodata NFS Cassandra Docker CentOS Ubuntu Base OS Neo4j Data mgmt 12
13 AppS Cloud Galaxy Portal Galaxy portal is widely used in the community analyse NGS data (mainly but not only) connected to community knowledge: data and indexes, tools, workflows Cloud advantages : User is administrator of his/her own Galaxy instance: install data and tools Versions 1,2..n & Updates Preserve workflows and results in cloud storage Help the integration of monthly updates and new tools Cloud permit different appliances to be built from the same base: a basic one with common tools for NGS specific ones for a domain or a set of tools e.g. Galaxy-MODAL, Galaxy-RADseq, EBA-ChIP-Seq for training: create a special appliance with dedicated datasets, tools or workflows e.g. AVIESAN school 2013 manual Galaxy NGS Run Linux system Galaxy + Tools Galaxy RADseq Galaxy automatic Galaxy MODAL Aviesan Cloud Marketplace Install Publish VMs 13
14 App R Sta-s-cal Compu-ng R software environment for statistical computing and graphics include common bioinformatics module RStudio IDE Biobase, BiocGenerics, BiocInstaller, GenomeInfoDb integrated development environment (IDE) for R features: console, syntax-highlighting editor Shiny web framework powerful web framework for building web applications using R. without requiring HTML, CSS, or JavaScript knowledge. Contact: Stéphane Delmotte (PRABI-LBBE) 14
15 IFB s cloud for Bioinforma-cs Public Data sources Data BioMAJ EMBL PDB Genomes UNIPROT PROSITE Reference Datasets common share VMs VMs VMs VMs VMs VMs VMs VMs VMs VMs Cloud Credentials Data Personalized interfaces j. doe e. martin you chb virtual disks cg User data Author. VMs VMs VMs Cloud for Bioinformatics 15
16 A cloud driven through a web dashboard 16
17 Browse the marketplace and run an App! Proteomics Sequences Galaxy Structures?... IFB s bioinformatics marketplace! 17
18 Pra-que 18
19 Connexion au Cloud IFB Connectez-vous au cloud IFB dans Sign in 19
20 Connexion au Cloud IFB (2) Lors de la première connexion rubrique Settings complétez vos paramètres! clé SSH: fichier ~/.ssh/dsa.pub attention aux retours à la ligne lors du copier-coller la créer avec sshkeygen (ou PuTTYgen) 20
21 Le tableau de bord du Cloud IFB Gérer ses VMs Créer / arrêter / renommer Gérer ses disques virtuels Créer / supprimer Visualisez les paramètres nom/type/taille état/charge CPU disque virtuel attaché 21
22 Créer une machine virtuelle Proteomics Sequences Galaxy Structures?... IFB s Marketplace! 22
23 Choisir la bonne appliance 23
24 Caractéris-ques d une VM Définir sa VM un nom nombre de CPUs taille mémoire attacher un disque virtuel Cluster de VMs remplir le nombre de VMs choix du nom unique Appelée aussi Instance 24
25 Les disques durs virtuels Pour stocker ses données taille et nombre variable (quota) retrouver ses données d une VM à la suivante.! pas de sauvegarde! Sur un vdisk l attacher à une (seule) VM à la création de la VM Partager un vdisk mode cluster VM NFS 25
26 Pra-que Depuis le tableau de bord du cloud Créez votre disque virtuel bouton New vdisk monddgalaxy, 10Go 26
27 Pra-que Depuis le tableau de bord du cloud bouton New instance identifier quelle appliance fournit l outil deeptools? quelle version de l outil? Créer une instance EBA15 Galaxy ChIP-seq nom: galaxy_roscoff_2015 taille: c3.medium (2 CPU, 8 GB RAM) attacher votre disque virtuel monddgalaxy 27
28 Monitor your usage 28
29 Ques-ons? Acknowledgments IFB members IFB hub: Patricia, Jean-François, Mohamed, Jonathan, Maxime, Dominique Alumni : Marie, Quentin we are hiring! Working group IFB-GRISBI (co-chair with Olivier Collin) Appliances developers Samuel Blanck (Inria Lille), Jacques van Helden (TAGC), Stéphane Delmotte (PRABI-Doua), Bruno Spataro (PRABI-Doua), Marie-Laure Franchinard (MIGALE), Anis Djari (BioinfoGenoToul), Bertrand Néron (Institut Pasteur), Adrien Josso (MicroScope), Thomas Lacroix (MIGALE), Christian Baudet (CLB), Germain Paimparay & Baptiste Brault (CFB) CNRS IDRIS: R. Medeiros, C. Gauthey and staff StratusLab members IFB is funded by French programs PIA INBS 2012, BioDataCloud EU H2020 projects, CYCLONE (644925) and EGI-Engage (654142) 29
Le cloud IFB et son instance Galaxy
Le cloud IFB et son instance Galaxy Christophe BLANCHET Institut Français de Bioinformatique - IFB French Institute of Bioinformatics - ELIXIR-FR CNRS UMS3601 - Gif-sur-Yvette - FRANCE Ecole Bioinformatique
More informationUne e-infrastructure nationale en bioinformatique
Une e-infrastructure nationale en bioinformatique Christophe BLANCHET Institut Français de Bioinformatique - IFB French Institute of Bioinformatics - ELIXIR-FR CNRS UMS3601 - Gif-sur-Yvette - FRANCE JDEV
More informationInstitut Français de Bioinformatique, Un Cloud pour les Sciences du Vivant
Institut Français de Bioinformatique, Un Cloud pour les Sciences du Vivant Christophe Blanchet! Institut Français de Bioinformatique - IFB French Institute of Bioinformatics - ELIXIR French Node CNRS UMS3601
More informationBioinformatique sur Cloud Cas d usage avec le portail Galaxy
Bioinformatique sur Cloud Cas d usage avec le portail Galaxy Christophe Blanchet Institute of Biology and Chemistry of Proteins Head of Service Infrastructure for Biology - IDB CNRS-IBCP FR3302 - LYON
More informationCloud pour la Bioinformatique
Cloud pour la Bioinformatique Christophe Blanchet Institut Français de Bioinformatique - IFB French Institute of Bioinformatics - ELIXIR French Node CNRS UMS3601 - Gif-sur-Yvette - FRANCE Sequencing data
More informationSequencing data. And other experimental data. EMBL-EBI data resources growth
Sequencing Institut Français de Bioinformatique, Un loud pour les Sciences du Vivant source: www.genomesonline.org source: www.politigenomics.com/next-generation- hristophe Blanchet Institut Français de
More informationCloud Ready for Bioinformatics?
IDB acknowledges co-funding by the European Community's Seventh Framework Programme (INFSO-RI-261552) and the French National Research Agency's Arpege Programme (ANR-10-SEGI-001) Cloud Ready for Bioinformatics?
More informationIFB s e-infrastructure
IFB s e-infrastructure Christophe Blanchet Institut Français de Bioinformatique - IFB French Institute of Bioinformatics - ELIXIR-FR CNRS UMS3601 - Gif-sur-Yvette - FRANCE Life Sciences Platforms in France
More informationDeployment of BioXSDenabled services on a Cloud. christophe.blanchet@ibcp.fr
Deployment of BioXSDenabled services on a Cloud Outline IBCP, provider of BioXSD-enabled services Cloud Computing RENABI GRISBI, French infrastructure Bioinformatics Integrated s gbio-pbil.ibcp.fr/ws GBIO
More informationE-SCIENCE IN WESTERN FRANCE : THE BEGINNING
E-SCIENCE IN WESTERN FRANCE : THE BEGINNING Yvan Le Bras Olivier Collin Jacques Nicolas CNRS UMR 6074 IRISA-INRIA Context Now : Genomics : Next Generation Sequencing Now : Proteomics Next : Bio-imaging
More informationDATA MANAGEMENT PLAN IN THE REAL LIFE SCIENCES
DATA MANAGEMENT PLAN IN THE REAL LIFE SCIENCES Yvan Le Bras Cyril Monjeaud Olivier Collin Jacques Nicolas CNRS UMR 6074 IRISA-INRIA Context Now : Genomics : Next Generation Sequencing Now : Proteomics
More informationA curated Domain centric shared Docker registry linked to the Galaxy toolshed
A curated Domain centric shared Docker registry linked to the Galaxy toolshed François Moreews 1, Olivier Sallou 2, Yvan le Bras 2, Marie Grosjean 3, Cyril Monjeaud 2, Thomas Darde 4, Olivier Collin 2,
More informationTowards a galaxy.prabi.fr
Towards a galaxy.prabi.fr IFB- galaxy Day 04/12/2013 Navra5l V., PhD, UCBL navra5l@prabi.fr www.prabi.fr One among the six IFB regional nodes Region: Rhône- Alpes Director: Guy Perrière 11 Research Team,
More informationE-SCIENCE IN WESTERN FRANCE :
E-SCIENCE IN WESTERN FRANCE : BEGINS Yvan Le Bras Cyril Monjeaud Olivier Collin & the GenOuest team CNRS UMR 6074 IRISA-INRIA Context Now : Genomics : Next Generation Sequencing Now : Proteomics Next :
More informationIns$tut Français de Bioinforma$que Current situa+on and prospect. IFB General Assembly Gif- sur- Yve=e, January 9 2015
Ins$tut Français de Bioinforma$que Current situa+on and prospect IFB General Assembly Gif- sur- Yve=e, January 9 2015 Background 2010: Na+onal Infrastructures in Biology and Health call from the Investment
More informationOpen Cloud System. (Integration of Eucalyptus, Hadoop and AppScale into deployment of University Private Cloud)
Open Cloud System (Integration of Eucalyptus, Hadoop and into deployment of University Private Cloud) Thinn Thu Naing University of Computer Studies, Yangon 25 th October 2011 Open Cloud System University
More informationSURFsara HPC Cloud Workshop
SURFsara HPC Cloud Workshop doc.hpccloud.surfsara.nl UvA workshop 2016-01-25 UvA HPC Course Jan 2016 Anatoli Danezi, Markus van Dijk cloud-support@surfsara.nl Agenda Introduction and Overview (current
More informationSURFsara HPC Cloud Workshop
SURFsara HPC Cloud Workshop www.cloud.sara.nl Tutorial 2014-06-11 UvA HPC and Big Data Course June 2014 Anatoli Danezi, Markus van Dijk cloud-support@surfsara.nl Agenda Introduction and Overview (current
More informationEoulsan Analyse du séquençage à haut débit dans le cloud et sur la grille
Eoulsan Analyse du séquençage à haut débit dans le cloud et sur la grille Journées SUCCES Stéphane Le Crom (UPMC IBENS) stephane.le_crom@upmc.fr Paris November 2013 The Sanger DNA sequencing method Sequencing
More informatione-biogenouest : The Tools
e-biogenouest : The Tools Coordinateur : Olivier Collin Animateur : Yvan Le Bras CNRS UMR 6074 IRISA-INRIA / Plateforme de Bioinformatique GenOuest yvan.le_bras@irisa.fr Programme fédérateur Biogenouest
More informationAdministrer les solutions Citrix XenApp et XenDesktop 7.6 CXD-203
Administrer les solutions Citrix XenApp XenDesktop 7.6 CXD-203 MIEL Centre Agréé : N 11 91 03 54 591 Pour contacter le service formation : 01 60 19 16 27 Pour consulter le planning des formations : www.miel.fr/formation
More informationicer Bioinformatics Support Fall 2011
icer Bioinformatics Support Fall 2011 John B. Johnston HPC Programmer Institute for Cyber Enabled Research 2011 Michigan State University Board of Trustees. Institute for Cyber Enabled Research (icer)
More informationBig Data and Cloud Computing for GHRSST
Big Data and Cloud Computing for GHRSST Jean-Francois Piollé (jfpiolle@ifremer.fr) Frédéric Paul, Olivier Archer CERSAT / Institut Français de Recherche pour l Exploitation de la Mer Facing data deluge
More informationStockage distribué sous Linux
Félix Simon Ludovic Gauthier IUT Nancy-Charlemagne - LP ASRALL Mars 2009 1 / 18 Introduction Répartition sur plusieurs machines Accessibilité depuis plusieurs clients Vu comme un seul et énorme espace
More informationStratusLab project. Standards, Interoperability and Asset Exploitation. Vangelis Floros, GRNET
StratusLab project Standards, Interoperability and Asset Exploitation Vangelis Floros, GRNET EGI Technical Forum 2011 19-22 September 2011, Lyon, France StratusLab is co-funded by the European Community
More informationUGENE Quick Start Guide
Quick Start Guide This document contains a quick introduction to UGENE. For more detailed information, you can find the UGENE User Manual and other special manuals in project website: http://ugene.unipro.ru.
More informationRestricted Document. Pulsant Technical Specification
Pulsant Technical Specification Title Pulsant Government Virtual Server IL2 Department Cloud Services Contributors RR Classification Restricted Version 1.0 Overview Pulsant offer two products based on
More informationSCC / QUANTUM Kick Off 2015 Comment gérer efficacement des workflows et archives de données non structurées?
SCC / QUANTUM Kick Off 2015 Comment gérer efficacement des workflows et archives de données non structurées? Stéphane Estevez QUANTUM Senior Product Marketing Manager EMEA Anne Morin SCC Business Developpement
More informationAlternative Deployment Models for Cloud Computing in HPC Applications. Society of HPC Professionals November 9, 2011 Steve Hebert, Nimbix
Alternative Deployment Models for Cloud Computing in HPC Applications Society of HPC Professionals November 9, 2011 Steve Hebert, Nimbix The case for Cloud in HPC Build it in house Assemble in the cloud?
More informationLe Cloud Computing selon IBM : stratégie et offres, zoom sur WebSphere CloudBurst
Le Cloud Computing selon IBM : stratégie et offres, zoom sur WebSphere CloudBurst Hervé Grange WebSphere Client Technical Expert Stéphane Woillez Senior IT Architect - Cloud Computing Champion IBM France
More informationOPEN SOURCE AND BOTTOM-UP VRE APPROACH IN WESTERN FRANCE
OPEN SOURCE AND BOTTOM-UP VRE APPROACH IN WESTERN FRANCE Towards supporting accessible, reproducible, and transparent research in the life sciences Yvan Le Bras Cyril Monjeaud Olivier Collin, the GenOuest
More informationLes nouveautés 2014 mise en lumière
Les nouveautés 2014 mise en lumière Raymond Papaux HP Networking Hervé Gaudin HP Storage Réseaux convergés LAN et SAN pour PME Choix de SAN Quels en sont les critères? Server A Server B Switch A Switch
More informationSOFTWARE DEFINED SOLUTIONS JEUDI 19 NOVEMBRE 2015. Nicolas EHRMAN Sr Presales SDS
SOFTWARE DEFINED SOLUTIONS JEUDI 19 NOVEMBRE 2015 Nicolas EHRMAN Sr Presales SDS Transform your Datacenter to the next level with EMC SDS EMC SOFTWARE DEFINED STORAGE, A SUCCESS STORY 5 ÈME ÉDITEUR MONDIAL
More informationCloud Computing through Virtualization and HPC technologies
Cloud Computing through Virtualization and HPC technologies William Lu, Ph.D. 1 Agenda Cloud Computing & HPC A Case of HPC Implementation Application Performance in VM Summary 2 Cloud Computing & HPC HPC
More informationMicrosoft Hyper-V chose a Primary Server Virtualization Platform
Roger Shupert, Integration Specialist } Lake Michigan College has been using Microsoft Hyper-V as it s primary server virtualization platform since 2008, in this presentation we will discuss the following;
More informationMaquette DB2 PureScale
Maquette DB2 PureScale PureScale et technologie Power7 Thierry Desbourdes thierry.desbourdes@fr.ibm.com DB2 PureScale Cluster Actif / Actif Automatic workload balancing On-Demand Provisioning Cluster de
More informationVincent Rullier Technology specialist Microsoft Suisse Romande
Vincent Rullier Technology specialist Microsoft Suisse Romande Pourquoi virtualiser Différents types de virtualisation Présentation Applications Postes de travail Serveurs Bénéfices Conclusion Q&A Technology
More informationGenomic Applications on Cray supercomputers: Next Generation Sequencing Workflow. Barry Bolding. Cray Inc Seattle, WA
Genomic Applications on Cray supercomputers: Next Generation Sequencing Workflow Barry Bolding Cray Inc Seattle, WA 1 CUG 2013 Paper Genomic Applications on Cray supercomputers: Next Generation Sequencing
More informationSeed4C: A Cloud Security Infrastructure validated on Grid 5000
Seed4C: A Cloud Security Infrastructure validated on Grid 5000 E. Caron 1, A. Lefray 1, B. Marquet 2, and J. Rouzaud-Cornabas 1 1 Université de Lyon. LIP Laboratory. UMR CNRS - ENS Lyon - INRIA - UCBL
More informationDU PROJET E-BIOGENOUEST À CESGO, PREMIER CENTRE E-SCIENCE EN FRANCE : MISE EN PLACE D UNE INFRASTRUCTURE DE DONNÉES OUVERTE
DU PROJET E-BIOGENOUEST À CESGO, PREMIER CENTRE E-SCIENCE EN FRANCE : MISE EN PLACE D UNE INFRASTRUCTURE DE DONNÉES OUVERTE Yvan Le Bras Cyril Monjeaud Olivier Collin & the GenOuest team CNRS UMR 6074
More informationExperiences and challenges in the development of the JASMIN cloud service for the environmental science community
JASMIN (STFC/Stephen Kill) Experiences and challenges in the development of the JASMIN cloud service for the environmental science community ECMWF Visualisa-on in Meteorology Week, 28 September 2015 Philip
More informationGroup Projects M1 - Cubbyhole
SUPINFO Academic Dept. Project presentation Group Projects Version 1.0 Last update: 20/11/2013 Use: Students Author: Samuel CUELLA Conditions d utilisations : SUPINFO International University vous permet
More informationEuro-BioImaging European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences
Euro-BioImaging European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences WP11 Data Storage and Analysis Task 11.1 Coordination Deliverable 11.2 Community Needs of
More informationBig Data in BioMedical Sciences. Steven Newhouse, Head of Technical Services, EMBL-EBI
Big Data in BioMedical Sciences Steven Newhouse, Head of Technical Services, EMBL-EBI Big Data for BioMedical Sciences EMBL-EBI: What we do and why? Challenges & Opportunities Infrastructure Requirements
More informationEnabling multi-cloud resources at CERN within the Helix Nebula project. D. Giordano (CERN IT-SDC) HEPiX Spring 2014 Workshop 23 May 2014
Enabling multi-cloud resources at CERN within the Helix Nebula project D. Giordano (CERN IT-) HEPiX Spring 2014 Workshop This document produced by Members of the Helix Nebula consortium is licensed under
More informationBig Data in BioMedical Sciences. Steven Newhouse, Head of Technical Services, EMBL-EBI
Big Data in BioMedical Sciences Steven Newhouse, Head of Technical Services, EMBL-EBI Big Data for BioMedical Sciences EMBL-EBI: What we do and why? Challenges & Opportunities Infrastructure Requirements
More informationBuilding Storage Service in a Private Cloud
Building Storage Service in a Private Cloud Sateesh Potturu & Deepak Vasudevan Wipro Technologies Abstract Storage in a private cloud is the storage that sits within a particular enterprise security domain
More informationDevelopment of Bio-Cloud Service for Genomic Analysis Based on Virtual
Development of Bio-Cloud Service for Genomic Analysis Based on Virtual Infrastructure 1 Jung-Ho Um, 2 Sang Bae Park, 3 Hoon Choi, 4 Hanmin Jung 1, First Author Korea Institute of Science and Technology
More informationPlanning, Provisioning and Deploying Enterprise Clouds with Oracle Enterprise Manager 12c Kevin Patterson, Principal Sales Consultant, Enterprise
Planning, Provisioning and Deploying Enterprise Clouds with Oracle Enterprise Manager 12c Kevin Patterson, Principal Sales Consultant, Enterprise Manager Oracle NIST Definition of Cloud Computing Cloud
More informationThree data delivery cases for EMBL- EBI s Embassy. Guy Cochrane www.ebi.ac.uk
Three data delivery cases for EMBL- EBI s Embassy Guy Cochrane www.ebi.ac.uk EMBL European Bioinformatics Institute Genes, genomes & variation European Nucleotide Archive 1000 Genomes Ensembl Ensembl Genomes
More informationOptions in Open Source Virtualization and Cloud Computing. Andrew Hadinyoto Republic Polytechnic
Options in Open Source Virtualization and Cloud Computing Andrew Hadinyoto Republic Polytechnic No Virtualization Application Operating System Hardware Virtualization (general) Application Application
More informationManaging and Conducting Biomedical Research on the Cloud Prasad Patil
Managing and Conducting Biomedical Research on the Cloud Prasad Patil Laboratory for Personalized Medicine Center for Biomedical Informatics Harvard Medical School SaaS & PaaS gmail google docs app engine
More informationIn order to upload a VM you need to have a VM image in one of the following formats:
What is VM Upload? 1. VM Upload allows you to import your own VM and add it to your environment running on CloudShare. This provides a convenient way to upload VMs and appliances which were already built.
More informationAgenda. Begining Research Project. Our problems. λ The End is not near...
About me... Davor Guttierrez Company 3 Gen d.o.o. 33 employes Located in Ljubljana - Slovenia IBM Mainframe, Virtualization (RHEL, OracleVM, ) Oracle Application Servers Oracle Databases Jboss, Weblogic,
More informationRed Hat enterprise virtualization 3.0 feature comparison
Red Hat enterprise virtualization 3.0 feature comparison at a glance Red Hat Enterprise is the first fully open source, enterprise ready virtualization platform Compare the functionality of RHEV to VMware
More informationGuide Share France Groupe de Travail MQ sept 2013
Guide Share France Groupe de Travail MQ sept 2013 Carl Farkas Pan-EMEA zwebsphere Application Integration Consultant IBM France D/2708 Paris, France Internet : farkas@fr.ibm.com 2013 IBM Corporation p1
More informationSystem Requirements Orion
Orion Date 21/12/12 Version 1.0 Référence 001 Auteur Antoine Crué VOS CONTACTS TECHNIQUES JEAN-PHILIPPE SENCKEISEN ANTOINE CRUE LIGNE DIRECTE : 01 34 93 35 33 EMAIL : JPSENCKEISEN@ORSENNA.FR LIGNE DIRECTE
More informationWebLogic on Oracle Database Appliance: Combining High Availability and Simplicity
WebLogic on Oracle Database Appliance: Combining High Availability and Simplicity Frances Zhao-Perez Alexandra Huff Oracle CAF Product Management Simon Haslam Technical Director O-box Safe Harbor Statement
More informationData Centers and Cloud Computing. Data Centers
Data Centers and Cloud Computing Intro. to Data centers Virtualization Basics Intro. to Cloud Computing 1 Data Centers Large server and storage farms 1000s of servers Many TBs or PBs of data Used by Enterprises
More informationHadoopizer : a cloud environment for bioinformatics data analysis
Hadoopizer : a cloud environment for bioinformatics data analysis Anthony Bretaudeau (1), Olivier Sallou (2), Olivier Collin (3) (1) anthony.bretaudeau@irisa.fr, INRIA/Irisa, Campus de Beaulieu, 35042,
More informationCopyright 2012, Oracle and/or its affiliates. All rights reserved.
1 Oracle Virtual Networking: Data Center Fabric for the Cloud Sébastien Grotto Oracle Virtual Networking Specialist Optimisez et Virtualisez vos Infrastructures DataCenter avec Oracle 4 juin 2013 Why Data
More informationNew solutions for Big Data Analysis and Visualization
New solutions for Big Data Analysis and Visualization From HPC to cloud-based solutions Barcelona, February 2013 Nacho Medina imedina@cipf.es http://bioinfo.cipf.es/imedina Head of the Computational Biology
More informationJimmy Goffaux @amto_res. Hébergement Cloud - TechDay
Jimmy Goffaux @amto_res Hébergement Cloud - TechDay Sommaire Besoin Chiffres Stockage : Ceph et local ACL et Permissions Hooks DNS Contextualisation Conclusion Besoin Besoin interne : - Industrialisation
More informationvnebula Cloud. Made Easy. Introducing vnebula from Stream Networks. A simple, self-service cloud portal for our partner community.
vnebula Cloud. Made Easy. Introducing vnebula from Stream Networks. A simple, self-service cloud portal for our partner community. Keep it simple Our partners asked us for a cloud portal that was simple
More informationOpen Source Cloud Computing Management with OpenNebula
CloudCamp Campus Party July 2011, Valencia Open Source Cloud Computing Management with OpenNebula Javier Fontán Muiños dsa-research.org Distributed Systems Architecture Research Group Universidad Complutense
More information2nd Singapore Heritage Science Conference
2nd Singapore Heritage Science Conference Nanyang Technological University (NTU), Singapour Thursday and Friday 15-16 January 2015 Intangible Heritage and Digital Humanities: the Realms of Music and Literature
More informationVirtual Computing and VMWare. Module 4
Virtual Computing and VMWare Module 4 Virtual Computing Cyber Defense program depends on virtual computing We will use it for hands-on learning Cyber defense competition will be hosted on a virtual computing
More informationSolution for private cloud computing
The CC1 system Solution for private cloud computing 1 Outline What is CC1? Features Technical details Use cases By scientist By HEP experiment System requirements and installation How to get it? 2 What
More informationModule I-7410 Advanced Linux FS-11 Part1: Virtualization with KVM
Bern University of Applied Sciences Engineering and Information Technology Module I-7410 Advanced Linux FS-11 Part1: Virtualization with KVM By Franz Meyer Version 1.0 February 2011 Virtualization Architecture
More informationStorage solutions for a. infrastructure. Giacinto DONVITO INFN-Bari. Workshop on Cloud Services for File Synchronisation and Sharing
Storage solutions for a productionlevel cloud infrastructure Giacinto DONVITO INFN-Bari Synchronisation and Sharing 1 Outline Use cases Technologies evaluated Implementation (hw and sw) Problems and optimization
More informationWorkshop. Avril 2015 Benoit Buonassera benoitb@checkpoint.com 06 72 94 19 98
Workshop Avril 2015 Benoit Buonassera benoitb@checkpoint.com 06 72 94 19 98 BE YOUR CUSTOMER S BEST ADVISOR By using the Security Checkup tool you will increase your business opportunities while bringing
More informationCOLLABORATIVE LCA. Rachel Arnould and Thomas Albisser. Hop-Cube, France
COLLABORATIVE LCA Rachel Arnould and Thomas Albisser Hop-Cube, France Abstract Ecolabels, standards, environmental labeling: product category rules supporting the desire for transparency on products environmental
More informationwu.cloud: Insights Gained from Operating a Private Cloud System
wu.cloud: Insights Gained from Operating a Private Cloud System Stefan Theußl, Institute for Statistics and Mathematics WU Wirtschaftsuniversität Wien March 23, 2011 1 / 14 Introduction In statistics we
More informationHyper-V vs ESX at the datacenter
Hyper-V vs ESX at the datacenter Gabrie van Zanten www.gabesvirtualworld.com GabesVirtualWorld Which hypervisor to use in the data center? Virtualisation has matured Virtualisation in the data center grows
More informationNebula Cloud Computing Project: Background, Technology, Operations, Challenges, and Status
Nebula Cloud Computing Project: Background, Technology, Operations, Challenges, and Status Raymond G. O Brien ARC CTO for IT Nebula Background Nebula cloud project evolved from a web app platform development
More informationAn Energy-aware Multi-start Local Search Metaheuristic for Scheduling VMs within the OpenNebula Cloud Distribution
An Energy-aware Multi-start Local Search Metaheuristic for Scheduling VMs within the OpenNebula Cloud Distribution Y. Kessaci, N. Melab et E-G. Talbi Dolphin Project Team, Université Lille 1, LIFL-CNRS,
More informationDedicated Hosting. The best of all worlds. Build your server to deliver just what you want. For more information visit: imcloudservices.com.
Dedicated Hosting The best of all worlds. Build your server to deliver just what you want. Only pay for what you use with no long term contracts. High availability, your server is in the cloud. Dedicated
More informationAssignment # 1 (Cloud Computing Security)
Assignment # 1 (Cloud Computing Security) Group Members: Abdullah Abid Zeeshan Qaiser M. Umar Hayat Table of Contents Windows Azure Introduction... 4 Windows Azure Services... 4 1. Compute... 4 a) Virtual
More informationIT-ADVENTURES PLAYGROUND (ISERINK) Remote Setup Guide IOWA STATE UNIVERSITY INFORMATION ASSURANCE CENTER
IT-ADVENTURES PLAYGROUND (ISERINK) Remote Setup Guide IOWA STATE UNIVERSITY INFORMATION ASSURANCE CENTER Spring 2014 Gaining access to your systems Since ISERink runs on a simulated internet provided by
More informationDeploying Business Virtual Appliances on Open Source Cloud Computing
International Journal of Computer Science and Telecommunications [Volume 3, Issue 4, April 2012] 26 ISSN 2047-3338 Deploying Business Virtual Appliances on Open Source Cloud Computing Tran Van Lang 1 and
More informationTHE EUCALYPTUS OPEN-SOURCE PRIVATE CLOUD
THE EUCALYPTUS OPEN-SOURCE PRIVATE CLOUD By Yohan Wadia ucalyptus is a Linux-based opensource software architecture that implements efficiencyenhancing private and hybrid clouds within an enterprise s
More informationAn Alternative to the VMware Tax...
An Alternative to the VMware Tax... John Tietjen Senior Solutions Architect Red Hat November 19, 2014 This presentation created for: AGENDA Red Hat Overview Red Hat Enterprise Virtualization: An alternative
More informationCalcul parallèle avec R
Calcul parallèle avec R ANF R Vincent Miele CNRS 07/10/2015 Pour chaque exercice, il est nécessaire d ouvrir une fenètre de visualisation des processes (Terminal + top sous Linux et Mac OS X, Gestionnaire
More informationHPC Cloud. Focus on your research. Floris Sluiter Project leader SARA
HPC Cloud Focus on your research Floris Sluiter Project leader SARA Why an HPC Cloud? Christophe Blanchet, IDB - Infrastructure Distributing Biology: Big task to port them all to your favorite architecture
More informationSAP Crystal Reports & SAP HANA: Integration & Roadmap Kenneth Li SAP SESSION CODE: 0401
SAP Crystal Reports & SAP HANA: Integration & Roadmap Kenneth Li SAP SESSION CODE: 0401 LEARNING POINTS Learn about Crystal Reports for HANA Glance at the road map for the product Overview of deploying
More information-> Integration of MAPHiTS in Galaxy
Enabling NGS Analysis with(out) the Infrastructure, 12:0512 Development of a workflow for SNPs detection in grapevine From Sets to Graphs: Towards a Realistic Enrichment Analy species: MAPHiTS -> Integration
More informationDenis Caromel, CEO Ac.veEon. Orchestrate and Accelerate Applica.ons. Open Source Cloud Solu.ons Hybrid Cloud: Private with Burst Capacity
Cloud computing et Virtualisation : applications au domaine de la Finance Denis Caromel, CEO Ac.veEon Orchestrate and Accelerate Applica.ons Open Source Cloud Solu.ons Hybrid Cloud: Private with Burst
More informationCase study: Migrating 1,000 VMs from VMware to RHEV. Tomas Von Veschler Cox Senior Solution Architect, Red Hat June 2013
Case study: Migrating 1,000 VMs from VMware to RHEV Tomas Von Veschler Cox Senior Solution Architect, Red Hat June 2013 Case headlines Increase virtualization capacity 4X Saving $1M in software licenses
More informationCloud Computing Solutions for Genomics Across Geographic, Institutional and Economic Barriers
Cloud Computing Solutions for Genomics Across Geographic, Institutional and Economic Barriers Ntinos Krampis Asst. Professor J. Craig Venter Institute kkrampis@jcvi.org http://www.jcvi.org/cms/about/bios/kkrampis/
More informationSolution for private cloud computing
The CC1 system Solution for private cloud computing 1 Outline What is CC1? Features Technical details System requirements and installation How to get it? 2 What is CC1? The CC1 system is a complete solution
More informationMobile Cloud Computing T-110.5121 Open Source IaaS
Mobile Cloud Computing T-110.5121 Open Source IaaS Tommi Mäkelä, Otaniemi Evolution Mainframe Centralized computation and storage, thin clients Dedicated hardware, software, experienced staff High capital
More informationCloud BioLinux: Pre-configured and On-demand Bioinformatics Computing for the Genomics Community
Cloud BioLinux: Pre-configured and On-demand Bioinformatics Computing for the Genomics Community Ntinos Krampis Asst. Professor J. Craig Venter Institute kkrampis@jcvi.org http://www.jcvi.org/cms/about/bios/kkrampis/
More informationIntroduction to Cloud Computing
Introduction to Cloud Computing Shang Juh Kao Dept. of Computer Science and Engineering National Chung Hsing University 2011/10/27 CSE, NCHU 1 Table of Contents 1. Introduction ( 資 料 取 自 NCHC 自 由 軟 體 實
More information2) Xen Hypervisor 3) UEC
5. Implementation Implementation of the trust model requires first preparing a test bed. It is a cloud computing environment that is required as the first step towards the implementation. Various tools
More informationParallels Plesk Automation
Parallels Plesk Automation Contents Compact Configuration: Linux Shared Hosting 3 Compact Configuration: Mixed Linux and Windows Shared Hosting 4 Medium Size Configuration: Mixed Linux and Windows Shared
More informationEstonian Scientific Computing Infrastructure (ETAIS)
Estonian Scientific Computing Infrastructure (ETAIS) Week #7 Hardi Teder hardi@eenet.ee University of Tartu March 27th 2013 Overview Estonian Scientific Computing Infrastructure Estonian Research infrastructures
More informationComputer Science. About PaaS Security. Donghoon Kim Henry E. Schaffer Mladen A. Vouk
About PaaS Security Donghoon Kim Henry E. Schaffer Mladen A. Vouk North Carolina State University, USA May 21, 2015 @ ICACON 2015 Outline Introduction Background Contribution PaaS Vulnerabilities and Countermeasures
More informationFinal Report on StratusLab Adoption
Final Report on StratusLab Adoption Charles Loomis, Mohammed Airaj, Marc-Elian Bégin, Christophe Blanchet, Evangelos Floros, Clément Gauthey To cite this version: Charles Loomis, Mohammed Airaj, Marc-Elian
More informationCloud OS. Philip Meyer Partner Technology Specialist - Hosting
Cloud OS Philip Meyer Partner Technology Specialist - Hosting The New Era of Hosting 52.4% 68% 62.5% Customers Cloud Applications Grow their business or realign to new company strategy Plan to adopt hybrid
More informationGetting Started Hacking on OpenNebula
LinuxTag 2013 Berlin, Germany, May 22nd Getting Started Hacking on OpenNebula Carlos Martín Project Engineer Acknowledgments The research leading to these results has received funding from Comunidad de
More information