Título/Title: Mejoras y avances conseguidos en el Atlas SPINCAM para el año WP3 Datos y sistemas de información

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1 Título/Title: Mejoras y avances conseguidos en el Atlas SPINCAM para el año 2014 Actividad en el plan de trabajo WP3 Datos y sistemas de información Autor: Fecha: Reunión: PAIS: Ecuador INSTITUCIÓN: CPPS TÉCNICOS: Steve, Erique Guajala Ned, Dwyer Ali, Alothman 03DIC2014 Taller técnico Indicadores, Gestión y Visualización de datos. Guayaquil (EC).

2 SPINCAM III Technical Workshop Guayaquil December 3-5, 2014 Ned Dwyer, Ali Alothman Coastal and Marine Research Centre University College Cork

3 Coastal and Marine Research Centre (CMRC) University College Cork (UCC) supports the activities of technical development of SPINCAM regional atlas hosted by CPPS CMRC role: Activity I: SIBIMAP data integration into SPINCAM regional atlas Activity II: Improving SPINCAM regional atlas interface Activity III: Integration of national data into SPINCAM regional atlas

4 Presented by: Ali Othman Steve Erique

5 Pending tasks (Santa Marta, Dec 2013) Interface Translation GeoNetwork Integration Dataset download New layers (SIBIMAP layers and other regional indicators) User Manual/Tutorial Data Quality control Presentation and Distribution

6 Sept, 2014: Technical Sessions in CPPS (Guayaquil, Ecuador) Data display issues were verified (UTF-8 compliance, floating point and other data conversions ) SIBIMAP interface was created and tested successfully with sample data. WMS Issues were checked with INVEMAR in order to propose solutions to overcome lack of integration of the service s metadata May, 2014: Technical Sessions in CMRC s HQ (Cork, Ireland) Geonetwork Integration and dataset download feature were achieved. SIBIMAP integration analysis led to a solution proposal. Interface translation and re-vamping tasks were set. WMS Integration issues were studied. New Geonetwork catalog is implemented

7

8 Activity I SIBIMAP data integration into SPINCAM regional atlas

9 SIBIMAP Data New SIBIMAP Search tab

10 SIBIMAP Data Three different species Cetaceans Tortoise Sharks All with specific observation options (sighting, entanglement, feeding, etc)

11 SIBIMAP Data A full list of Cetacean and Tortoise data is imported from SIBIMAP database List is available now through SIBIMAP tab on regional Smart Atlas Both Metadata and Data associated with these species are available for discovery and visualization through the atlas

12 SIBIMAP Data Sharks species have only metadata available at the moment Metadata option is the available option for search of this species If data becomes available in the future, adding associated datasets would require no extra technical development work It would only require the configuration files to be updated accordingly

13 SIBIMAP Data CPPS helped with a great effort to introduce data files and associated map files for SIBIMAP database to be incorporated into smart atlas through WMS standard - Thanks to Steve Erique and his team Discussions and feedback from Fernando Felix and his team at first technical workshop led to lots of bug fixes and feature improvements

14

15 SIBIMAP Data Improvements from feedback and discussions: Visualisation of full metadata records (cross browser compatibility) Character encodings in UTF8 Sorting attributes in information pop-ups in a customized order Updating overlays/selected layers information through SIBIMAP search Workflow scenarios for searching through newly introduced SIBIMAP block

16 SIBIMAPS species integration Tab panels of species

17 SIBIMAP Search User can select: species common/scientific name These two lists are linked. Selecting common name would change to associated scientific name and vice versa Observation type: Entanglement Sighting

18

19 SIBIMAP Search Search buttons Show Metadata button: Tabular metadata information about species Selected served as JPG images Display on map button: Selected species will be displayed on the mapping area of Smart Atlas via Web Map Service standard protocol (WMS)

20 SIBIMAP s Non-compliant Geonetwork Metadata problem is solved by calling spec-sheets from within A standard Geonetwork catalog entry

21 SIBIMAP Search Display on map button Load species data on smart atlas map area Tick the layer on the Overlays tab so it can be removed/added again later on Add this layer to selected layers work-space Following diagram depicts this search workflow

22

23 Activity II Improving SMART ATLAS Interface

24 Feature information visualisation JS Grids instead of html pop-ups More flexible and interactive Standard conformant (GML) Attributes can be ordered in a customized fashion Support for different data types (floats, dates, links etc..) Following diagram illustrates updated feature information visualization

25 Feature information visualisation (2013)

26 Feature information visualisation (2014)

27 Feature information visualisation Multiple features can be expanded/collapsed in an accordion layout style Custom rendering for columns Custom sorting for attributes User friendly labels instead of scientific names used in data files Full advantages of built-in features of ExtJS grids that can be used out of box: Sorting, headers, resizing, etc..

28 New Features Features added to regional atlas which is inherited from the continuous developments for ODIN-AFRICA Project Print Functionality Web page form Image Translation of interface Spanish Language French Language Toolbar / Icons / Logos Customization SPINCAM Atlas and sponsors logos with hyperlinks to Geonetwork catalog and Official SPINCAM website, respectively Customized Toolbar icons (by CPPS) Special Icons for layers (sighting, entanglement, port, etc)

29

30 Activity III Visualization of national data into the regional atlas

31 Remote WMS Data Colombian data special use case Data for Colombia can t be hosted locally on CPPS server due to licensing, policy issues Smart Atlas is configured to pull data remotely from it s host server in Colombia Two operation to be performed: GetMap: getting data as images and rendering that on the mapping area GetFeatureInfo: clicking on a specific feature to get further details about selected feature

32 Recommendations

33 Data Management The provided datasets still require a big amount of time for fixing and conversion (units,special characters, field names, UTF-8 compliance) It is very desirable that WMS services layers and names are not modified without early notice and that they don t include special characters, specially if the goal is to provide services for other languages. Data quality control and standarization should be enforced in order to minimize delays in the Atlas s layers deliveries.

34 WMS presentation Metadata display issues have been worked and a temporary solution has been implemented only for one case of study. However, a fair amount of effort and programming will be required to improve the look and feel of the current WMS services in SPINCAM Atlas.

35 Performance Issues Users input is required in order to improve the SPINCAM Atlas performance and accuracy. Improvements might be achieved by investing in operating system virtualization, hardware, Internet service, staff, etc.

36 Recommendations and possible future improvements: Migration to Geonetwork 2.10.X New Wrappers for getting remote data Improve layer information box (separate web service)

37 Recommendations and possible future improvements data discovery based on standard themes for example INSPIRE or GEMET any existing established themes across South America - pacific ocean? MESMA Project

38 Recommendations and possible future improvements improve layer information box (separate web services) Currently information box displays plain text annotations provided in the metadata section of map files A separate RESTFUL web service can update information tab for layers with standard template of thumbnails, links and HTML blocks that could improve readability and usability

39 Recommendations and possible future improvements building user training pages (discovery/visualization/download services) New section As part of current SPINCAM e.g /training Use IOC Ocean Teacher portal Training material would include tutorials and lessons on how best to use smart atlas software to publish data, create map files, metadata files and the use of standard web discovery/search and download services

40 Summary of Activities

41 Research and training activities Summary (1) Task Status Notes Activity I: Integrating SIBIMAP in the SPINCAM Regional Atlas Activity II: Improving SMARTATLAS Interface Activity III: Visualization of national data in the Regional Atlas WMS Completed Completed In Progress SIBIMAP is now fully integrated into SPINCAM regional atlas SPINCAM regional atlas has been updated with new feature information visualisation grids, localization into Spanish language and redesign of icons of regional atlas toolbar Ongoing research and discussions on how best to serve national data into SPINCAM regional atlas

42 Research and training activities Summary (2) Updated software packages of Smart Atlas for SPINCAM is uploaded to the download page at Registration is required with a valid user-name/password to download the software Updated Smart Atlas is installed for the regional SPINCAM atlas at Continuous testing and feedback is being performed by CPPS A word document report about activities of the development of SPINCAM regional atlas has been submitted to IOC

43 Appendix

44 Remote WMS Data Remote GetMap operation is fully implemented Remote GetFeatureInfo is partially implemented This is due to MapServer implementation MapServer is the backend server used by Smart Atlas Mapserver acts as a proxy to forward the request from SmartAtlas to remote server and getting back results from remote server to Smart Atlas

45 Remote WMS Data Remote GetFeatureInfo is partially implemented This is due to MapServer implementation This behaviour is to be overridden for Colombian data use case when GetFeatureInfo is performed When user clicks on the polygon of Colombia, a special wrapper script is used to send a JS request to remote server in Colombia for feature information Due to browser security same origin policy, these kind of requests would be blocked by internet browsers

46 Remote WMS Data Response (format) from remote map server must be known to client (Smart Atlas), so it can render the load coming back from server Three different types are supported as part of WMS standard Output:text/plain Output:text/html Output:application/vnd.ogc.gml

47 Remote WMS Data Option (1): Plain text can be chosen to be the output format of visualizing feature information It will be hard for the user to read and interpret as there will be little if no format not recommended

48 Remote WMS Data Option (2): HTML can be chosen to be the output format of visualizing feature information Client will show results as it comes from the server (already formatted) without any modification Server can send back result well formatted, so users can read it/interpret it easily Recommended

49 Remote WMS Data Option (3): GML can be chosen to be the output format of visualizing feature information Client will need to understand GML application profile used to be able to render information coming from server Less preferable as a new wrapper must be installed for every newly registered remote node

50 Recommendations Geonetwork 2.10.X SPINCAM regional atlas uses Geonetwork 2.6.X as a Metadata server and a Catalogue Web Service (CSW) provider Search/discovery operations done in the Simple search and Advance search panels on the regional atlas perform the search using this version of Geonetwork

51 Recommendations Geonetwork 2.10.X new features A quick look at some of the updates offered by latest version of Geonetwork 2.10.X (has not been evaluated by CMRC yet) Multilingual Indexing: If you have to cope with metadata in different languages, GeoNetwork can now index each language and search all across language indexes by translating your search terms

52 Recommendations Geonetwork 2.10.X new features Javascript widget user interface: A new user interface using one of the latest Javascript widget libraries (extjs) has been added to has been added to support searching, editing and viewing metadata records Editor Improvements: Picking terms from a thesaurus using a search widget, selecting reusable metadata components for inclusion in the record, user defined suggestions or picklists to control content, context sensitive help

53 Recommendations Geonetwork 2.10.X new features Metadata Status: Allows finer control of the metadata workflow. Records can be assigned a status that reflects where they are in the metadata workflow: draft, approved, retired, submitted, rejected Improved Database Connection Handling and Pooling Faceted search: Narrow your search by easily selecting new filter Continuous bug fixing

54 Recommendations Geonetwork 2.10.X Integration with regional atlas we would recommend upgrading to the latest version of Geonetwork as it will improve: Search based on the Spanish language Improved interface for publishing and navigating metadata records optimized performance and reduced response time for search Full list of new features available can be found at: ndex.html

55 Recommendations Geonetwork 2.10.X Integration with regional atlas Smart Atlas uses CSW version standard and communicate with Geonetwork application server that implements this standard A quick test to check if Smart Atlas work out of box with the new Geonetwork upgrade proved to be not possible A closer look at the way new Geonetwork handle CSW requests and apply filters is needed to have SPINCAM regional smart atlas plugged onto new version of Geonetwork

56 Recommendations MESMA Monitoring and Evaluation of Spatially Managed Areas EU FP7 MESMA has supplied innovative methods and integrated strategies for planning and decision making at different local, national, and European scales, for sustainable development of European seas project lead by IMARES - Marine Ecology Research Center- Holland - Luc van Hoof CMRC lead a work package on data management

57 MESMA use-case studies data analysis figure: Number of records with data links - Non WMS Number of records with WMS links Number of records with No data links Number of total records

58 INSPIRE (European Infrastructure Directive) Annex Themes Annex I 1. Co-ordinate reference systems 2. Geographical grid systems 3. Geographical names 4. Administrative units 5. Addresses 6. Cadastral parcels 7. Transport networks 8. Hydrography 9. Protected sites Annex II 1. Elevation 2. Land cover 3. Orthoimagery 4. Geology Annex III 1. Statistical units 2. Buildings 3. Soil 4. Land use 5. Human health and safety 6. Utility and government services 7. Environmental monitoring facilities 8. Production and industrial facilities 9. Agricultural and aquaculture facilities 10. Population distribution - demography 11. Area management restriction/regulation zones and reporting units 12. Natural risk zones 13. Atmospheric conditions 14. Meteorological geographical features 15. Oceanographic geographical features 16. Sea regions 17. Bio-geographical regions 18. Habitats and biotopes 19. Species distribution 20. Energy resources 21. Mineral resources

59 End of document!

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