Prof. Miloš ŠRÁMEK. Personal data. Biographical Sketch. Education and degrees. Employment. First, last name: Miloš Šrámek

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1 Prof. Miloš ŠRÁMEK Biographical Sketch Personal data First, last name: Miloš Šrámek Born : June 16, 1958, Bratislava, Slovakia Current employment: Gregor Mendel Institute of Molecular Plant Biology, Dr. Bohr-Gasse 3, 1030 Vienna, Austria Contact: milos.sramek (at) gmi.oeaw.ac.at Education and degrees : Ing. (Dipl.-Ing., MSc.) degree, Slovak Technical University in Bratislava, Slovakia, Faculty of Electrical Engineering and Information Technology, Field of study: Solid-State Physics : PhD. Degree, Vienna University of Technology, Austria, Field of study: Applied Computer Science Thesis: Visualization of Volumetric Data by Ray Tracing 2002 : Univ.-Doz. (Universitätsdozent, docent) degree, Vienna University of Technology, Austria, Field: Applied Computer Science, Thesis: Distance and Distance Transforms in Volume Graphics 2010 : Professor degree, Komenský University, Bratislava, Slovakia Field: Computer Science, Employment : Semiconductor technology engineer, Tesla Piešt any, Slovakia : System administrator, Slovak Bureau of Statistics, Bratislava, Slovakia : Institute of Measurement Science, Slovak Academy of Sciences, Bratislava, Slovakia : Institute for Information Processing of the Austrian Academy of Sciences, Vienna, Austria, part time : Institute for Information Processing of the Austrian Academy of Sciences, Vienna, Austria, part time : Center for Visual Computing, SUNY Stony Brook, NY, USA 1999 today : Austrian Academy of Sciences, Vienna, Austria : Commission for Scientific Visualization 2012 today : Gregor Mendel Institute of Molecular Plant Biology

2 Miloš ŠRÁMEK, Biographical sketch 2 Professional background General: basic and applied research in processing, modeling and visualization of discrete 2D and 3D data with applications in remote sensing, humanities, medical imaging and biology. 2D and 3D image processing segmentation and analysis of discrete volumetric data, interactive segmentation of volumetric data, segmentation by the watershed transform, scale space analysis, streamed processing of large volume data, parallelization and hardware acceleration Volume graphics and 3D object modeling volumetric object representation by distance fields, voxelization of geometric objects, implicit and volumetric modeling of biological structures Visualization of volumetric data Other Surface and volume rendering techniques, ray tracing algorithms in volume graphics, hardware acceleration in volume visualization, medical imaging, transfer functions in volume visualization, interaction techniques Applications of free and open source software in research and education Scientific Projects 1. KASI Knowledge Assisted Sparse Interaction for Peripheral CT Angiography, , Fonds zur Förderung der wissenschaftlichen Forschung (FWF), Austria, No. TRP-67-N23 (project head) 2. Science and Best Practice of Visualizationa and Interactions, joint seminar, 2011, Fonds zur Förderung der wissenschaftlichen Forschung (FWF), Austria, No. AJS 340-N23 (project head) 3. Clinical Visualization Tools for Peripheral CT-Angiography (AngioVisII), , Fonds zur Förderung der wissenschaftlichen Forschung (FWF), Austria, No. L291-N04 (project head) 4. Visualization Tools for CT-Angiography of Peripheral Vascular Disease (AngioVis), , Fonds zur Förderung der wissenschaftlichen Forschung (FWF), Austria, No. P15217 (principal investigator) 5. Structural Features of Landscape Ecology as Indicators for Sustainable Land Use, Federal Ministry for Science, Transport and Culture, , Austria

3 Miloš ŠRÁMEK, Biographical sketch 3 Teaching and student mentoring Universities Faculty of Mathematics, Physics and Informatics, Comenius University, Bratislava, Slovakia Vienna University of Technology, Vienna, Austria Masaryk University, Brno, Czech republic Lectures Visualization of Multidimensional Data, Comenius University, , winter semester, 2 hours/semester Selected Chapters from Applied Computer Science: Medical Imaging, Vienna University of Technology, No , summer semester, , 2 hours/semester (50%, together with L. Dimitrov) Visualization of Medical Data 1, Vienna University of Technology, No , , summer semester, 2 hours/semester (50%, together with Leonid Dimitrov) Visualization of Multidimensional Data, Comenius University, , winter semester, 2 hours/semester GNU/Linux and its Tools, Comenius University, , winter semester, 2 hours/semester Visualization of Medical Data, Masaryk University, 2009, summer semester Seminar coaching Volume Graphics Seminar, Comenius University, , winter and summer semester, 2 hours/semester Practical courses Project Practical Course (with bachelor thesis), Vienna University of Technology, , 2004 Practical Course Computer Graphics and Image Processing, Vienna University of Technology, , 2004S Practical Course Computer Graphics and Image Processing, Vienna University of Technology, , Project Practical Course (with bachelor thesis), Vienna University of Technology, , Practical Course Computer Graphics and Image Processing, Vienna University of Technology, , Student coaching PhD students, Vienna University of Technology: Matúš Straka (finished 2006, thesis topic Processing and Visualization of Peripheral CT- Angiography Datasets, PhD students, Comenius University Bratislava:

4 Miloš ŠRÁMEK, Biographical sketch 4 Marek Zimányi, finished 2007, thesis topic Model Based Reconstruction for Volume Visualization Pavol Novotný, finished 2008, thesis topic Voxelization of Solids With Sharp Details Július Parulek, finished 2008, thesis topic A Problem Solving Environment for Stereology Based Implicit Modeling of Muscle Cells Michal Červeňanský, finished 2010, thesis topic Graphics Computations on GPU in the OpenGl Environment Anton Vaško, finished 2011, thesis topic Optimization of Volume Data Filtering for SIMD- Enhanced General-Purpose Processors Michal Hučko, finished 2012, thesis topic Region-Based Processing and Visualisation of Volumetric Data MSc students, Vienna University of Technology: Andrea Harant (2005), Matthias Bernhard (2006), Gabriel Mistelbauer (2010) MSc students, Comenius University Bratislava Marek Zimányi (1998), Ondrej Lonek (2001), Pavol Novotný (2003), Július Parulek (2003), Michal Červeňanský (2004), Anton Vaško (2005), Tomáš Pail (2005), Dušan Migra (2005) Michal Hučko (2008), Marta Reznáková (2009), Erika Pálešová (2009), Michal Vanek (2010), Ivan Kolesár (2011), Marianna Takáčová (2013) Scientific Community Organization of Conferences Open Source Software in Research, Education and IT Solutions ( ), Žilina, Slovakia International Symposium on Volume Graphics, Praha 2007 Eurographics 2007 Medical Prize, Praha 2007 Membership in program committees The EuroVis 2012 Conference, Vienna, Austria, June 5 8, 2012 The Visualization 2011 Conference, Providence, USA, October 2011 The Visualization 2010 Conference, Salt Lake City, USA, October 2010 Shape Modeling International, Aix-en Provence, France, June 21 23, 2010 Visual Computing for Biology and Medicine, Leipzig, Germany, July 1-2, 2010 Open Source Software in Research and Education and IT Solutions, July 1-4, 2010 Žilina, Slovakia Eurographics 2010, Norrköping, Sweden, May 3-7, 2010 Open Source Software in Research and Education and IT Solutions, July 3-5, Žilina, 2009, Slovakia Aplimat 2008 Invited section Open Source Software in Research and Education, Bratislava, 2008 IEEE International Conference on Shape Modeling and Applications Stony Brook University, June 4 6, 2008 International Symposium on Volume Graphics, Praha 2007

5 Miloš ŠRÁMEK, Biographical sketch 5 Eurographics 2007 Medical Prize, Praha 2007 Aplimat 2007 Invited section Open Source Software in Research and Education, Bratislava, 2007 IADIS Computer Graphics and Visualization (CGV) 2007, Linda-a-Velha - Portugal IEEE Visualization 2007 Conference, October 31 Novenber 1, Sacramento CA, USA IEEE Visualization 2006, Oct 29 Nov 3, Baltimore MD, USA 7-th Eurographics Workshop on Visualization in Scientific Computing, 1997, Prague Spring Conference on Computer Graphics, Budmerice, Slovakia, Rewieving Journals The Visual Computer, Computers and Graphics, Computer Graphics Forum, IEEE Transactions on Visualization and Computer Graphics, International Journal of Computer Assisted Radiology and Surgery, Journal of Graphic Tools, Journal of Electronic Imaging, Journal of Medical Informatics and Technologies, ACM Transactions on Graphics, International Journal of Image and Graphics, IEEE Transactions on Medical Imaging, IEEE Transactions on Image Processing, Computer Vision and Image Understanding, Measurement Science Review, ACM Computing Surveys Conferences EuroVis 2012, Vienna, Austria, June 5 8, 2012 (5 papers) Eurographics 2012, May 13-18, 2012, Cagliari, Italy (1 paper) International Conferences in Central Europe on Computer Graphics, Visualization and Computer Vision, 2012, Pilsen, Czech republic (3 papers) GRAPP 2012, Barcelovna, Spain (2 papers) Eurographics 2011, (2 papers) The Visualization 2011 Conference, Providence, USA, October 2011 (6 papers) The Visualization 2010 Conference, Salt Lake City, USA, October 2010 (8 papers) Shape Modeling International, Aix-en-Provence, France, June 21 23, 2010 (3 papers) Visual Computing for Biology and Medicine, Leipzig, Germany, July 1-2, 2010 (2 papers) Eurographics 2010, Norrköping, Sweden, May 3-7, 2010 (12 papers) Shape Modeling and Applications Stony Brook 2008 (2 papers) IEEE Visualization 2008 Conference, (2 papers) IEEE Visualization 2007 Conference (4 papers) Eurographics 2007 (6 papers) Eurographics 2006 (12 papers) IEEE Visualization 2006 Conference (5 papers)

6 Miloš ŠRÁMEK, Biographical sketch 6 PhD Theses Czech University of Technology Prague 2002, 2011, 2015; Technical University Vienna 2005, 2008, 2009, 2014; Technical University Denmark 2007, 2012; Komenský University Bratislava 2009, 2010, 2013, 2014; Slovak Technical University, Bratislava, 2011; Slovak Academy of sciences, Bratislava, 2009 Selected publications 2006 [1] Gabriel Mistelbauer, Andrej Varchola, Hamed Bouzari, Juraj Starinsky, Arnold Kochl, Rudiger Schernthaner, Dominik Fleischmann, Eduard Groller, and Milos Sramek. Centerline reformations of complex vascular structures. In IEEE Pacific Visualization Symposium, pages , Los Alamitos, CA, USA, IEEE Computer Society. [2] Michal Hučko and Miloš Šrámek. Streamed watershed tranform on gpu for proccessing of large volume data. In Proceedings of the 28th Spring Conference on Computer Graphics, pages , Budmerice, Slovakia, [3] Michal Hučko and Miloš Šrámek. Interactive segmentation of volume data using watershed hierarchies. In 20th WSCG International Conference on Computer Graphics, Visualization and Computer Vision, pages, Pilsen, Czech Republic, accepted. [4] Gabriel Mistelbauer, Hamed Bouzari, Stefan Bruckner, Milos Sramek, and Eduard Gröller. Smart super views a knowledge-assisted interface for medical visualization. In IEEE Conference on Visual Analytics Science and Technology, pages, Seattle, Washington, USA, 2012 accepted. [5] Anton Vaško and Miloš Šrámek. Optimizing Gaussian filtering of volumetric data using SSE. Concurr. Comput. : Pract. Exper., 23: , Jan [6] M. Sramek. Pixel-by-pixel comparison of ODF documents rendered by various tools. PlugFest, July 14-15, 2011, Berlin, Germany, July [7] Michal Hucko and Milos Sramek. Region-based processing of volumetric data. Journal of Medical Informatics & Technologies, 17: , ISSN [8] Milos Sramek. Processing and visualization of vessel data in the angiovis project. In Peter Panfilov and Milos Sramek, editors, Bilateral Scientific Seminar: The Science and Best Practice of Visualizations and User Interactions. Book of Abstracts, pages Vienna, Austria. [9] Michal Červeňanský, Zsolt Tóth, Juraj Starinský, Andrej Ferko, and Miloš Šrámek. Parallel gpubased data-dependent triangulations. Computers & Graphics, 34(2): , [10] Pavol Novotný, Leonid I. Dimitrov and Miloš Šrámek. Enhanced voxelization and representation of objects with sharp details in truncated distance fields. IEEE Transactions on Visualization and Computer Graphics, 16(03): , [11] Michal Hučko, Michal Vanek, and Miloš Šrámek. The VRE volume rendering engine. In Proceedings of the 26th Spring Conference on Computer Graphics, SCCG 10, pages 61 68, New York, NY, USA, ACM. [12] Július Parulek, Miloš Šrámek, Michal Červenanský, Marta Novotová, and Ivan Zahradník. A cell architecture modeling system based on quantitative ultrastructural characteristics. In Ivan V. Maly, editor, Systems Biology, volume 500 of Methods in Molecular Biology, pages Humana Press, [13] Július Parulek, Miloš Šrámek, and Ivan Zahradník. Geomcell, design of cell geometry. In Nadia Magnenat-Thalmann, Jian J. Zhang, and David D. Feng, editors, Recent Advances in the 3D Physiological Human, pages Springer, 2009.

7 Miloš ŠRÁMEK, Biographical sketch 7 [14] Roman Ďurikovič, Silvester Czanner, Július Parulek,, and Miloš Šrámek. Heterogeneous modeling of biological organs and organ growth. In Alexander Pasko, Valery Adzhiev, and Peter Comninos, editors, Heterogeneous Objects Modelling and Applications, Lecture Notes in Computer Science, Vol 4889, pages Springer Verlag, [15] Andrej Varchola, Anton Vaško, Viliam Solčány, Leonid I. Dimitrov, and M. Šrámek. Processing of volumetric data by slice- and process-based streaming. In Hannah Slay and Shaun Bangay, editors, Afrigraph 07, pages , Grahamstown, South Africa, ACM Siggraph. [16] J. Parulek and M. Šrámek. Implicit modeling by metamorphosis of 2D shapes. In Mateu Sbert, editor, SCCG 07: Proceedings of the 23rd spring conference on Computer graphics, pages ACM Press, [17] Justus E. Roos, Dominik Fleischmann, Arnold Köchl, Tejas Rakshe, Matus Straka, Alessandro Napoli, Armin Kanitsar, Miloš Šrámek and Eduard Gröller. Multi-path curved planar reformation (mpcpr) of the peripheral arterial tree in CT angiography (CTA). Radiology, 244(1): , [18] M.L.H. Gruwel, P. Latta, M. Tanasiewicz, V. Volotovskyy, M. Šrámek, and B. Tomanek. MR imaging of teeth using a silent single point imaging technique. Applied Physics A, 88: , [19] Mark Jones, J. Andreas Bærentzen, and Miloš Šrámek. 3D distance fields: A survey of techniques and applications. IEEE Transactions on Visualization and Computer Graphics, 12(4): , [20] Parulek J, Šrámek M., Novotová M., and Zahradník I. Geometric modeling of muscle cells computer aided generation of complex structural models of muscle cells. GIT Imaging & Microscopy, 2, [21] J. Parulek, P. Novotný, and M. Šrámek. XISL a development tool for construction of implicit surfaces. In SCCG 06: Proceedings of the 22st spring conference on Computer graphics, pages , New York, NY, USA, ACM Press. [22] Leonid I. Dimitrov, Emanuel Wenger, Miloš Šrámek, Elisabeth Trinkl, and Claudia Lang-Auinger. VISAGE: An integrated environment for visualization and study of archaeological data generated by industrial computer tomography. In M. Ioannides, D. Arnold, F. Niccolucci, and K. Mania, editors, The 7th VAST International Symposium on Virtual Reality, Archaeology and Cultural Heritage (VAST), volume 4263, pages 49 55, Edited books and proceedings [23] Michal Kaukič, Miloš Šrámek and Ladislav Ševčovič, editors. Open Source Software in Education, Research and IT Solutions OSSConf2012, Žilina, Slovakia, July Society for Open Information Technologies, Slovakia. [24] Michal Kaukič, Miloš Šrámek, Slavko Fedorik, and Ladislav Ševčovič, editors. Open Source Software in Education, Research and IT Solutions OSSConf2011, Žilina, Slovakia, July Society for Open Information [25] Peter Panfilov and Milos Sramek, editors. Bilateral Scientific Seminar: The Science and Best Practice of Visualizations and User Interactions. Book of Abstracts Vienna, Austria. [26] H.-C. Hege, R. Machiraju, T. Möller, and M. Sramek, editors. Volume Graphics 2007 International Symposium on Volume Graphics Proceedings. ISBN , IEEE Computer Society, Vienna, January 20, 2015 Miloš Šrámek