COMPUTER HARDWARE: For maintenance/emergency status updates please see Service status. Networking:

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1 For maintenance/emergency status updates please see Service status. COMPUTER HARDWARE: Networking: - 1Gb (fiber) - Internet Access - 10Gb Core Switching (Juniper Ex4500/4200) - 40Gb Infiniband QDR HPC network - 10Gb iscsi SAN - 1Gb Local Network - (3Com, Netgear, Linksys & HP equipment) Clusters: - 64bit Application Cluster of 8 48core nodes (384 cores), 768G RAM, 10Gb iscsi, XenServer 6.0 Enterprise Edition - 64bit Computing Cluster of 32 48core nodes (1536 cores, 13.5 TFLOPs), 3T RAM, Infiniband QDR Interconnect, Scientific Linux 5.7, Torque bit Computing Cluster of 18 dual-cpu nodes (36 processors): 24x Intel Xeon 3.06 GHz, 12x Intel Xeon 2.4 GHz, 40G RAM, 1.5T 15k SAS NAS, Debian GNU/Linux 4.0, SGE 6.0u8-64 bit Computing Cluster of 20 dual-cpu nodes (40 processors): 40 x AMD Opteron GHz, 40G RAM, 1.5T 15k SAS NAS, Debian GNU/Linux 4.0, SGE 6.0u8 Storage systems: T of LustreFS for Computing Clusters (including 2T on SSD Drives) on 4x HP DL380, 16x 60G SSD Drives, 3x HP P20003G SAS6G, 24x 2T SATA, 12x 600G SAS, Infiniband QD - 1T SSD NAS, Ubuntu 10.04, Infiniband QDR on HP DL380, 16x 60G SSD Drives - 25T of raw storage for Application Cluster on 48x 600G SAS drives (HP P2000G3 10Gb iscsi) - IBM Storage DS3200 9TB SAS/SAS storage (20x450GB 15k SAS, 4x600GB 15k SAS), 2G Redundant RAID controller - 48T of raw storage Fujitsu Eternus DX80 FC/FC storage - Dual-CPU Opteron 270 2GHz, 6GB RAM, 74GB SCSI 15k + 12TB SATA RAID 1 / 9

2 - 3TB 2x Dual-CPU Xeon GHz, 2GB RAM, SAS RAID Servers: - Sun Microsystems Sun Fire v210 Sparc, SunOS Sun Microsystems Sun Fire X4200 2x Opteron 285; 8GB RAM; 2x73GB SAS 10k - IBM System x3650 2x Xeon L5420; 16GB RAM; 2x143GB SAS 15k RAID, dual-port FC 8Gbit HBA - IBM System x345 2x Xeon 3000 Series 2.2GHz; 4GB RAM; 36GB 15k SCSI RAID - 2x IBM System x336 2x Xeon 3000 Series 3.0GHz; 4GB RAM, 2x73GB 10k SCSI RAID - IBM System x330 2x Pentium 3 1.4GHz; 1GB RAM; 36GB 10k SCSI RAID - IBM System x232 Pentium 3 800MHz; 1GB RAM; 4x73GB 15k SCSI RAID - IBM Netfinity x Pentium 3 1.0GHz; 1,5GB RAM; 6x36GB SCSI RAID - HP Proliant DL360 Xeon 3000 Series 2.8GHz; 4GB RAM; 36GB 15k SCSI RAID - Dual-CPU Opteron 246 2GHz, 2GB RAM, 6GB SATA RAID - Quad-CPU Opteron ,3GHz, 32GB RAM, 1,2TB SAS RAID - Dual-CPU Opteron 270 2GHz, 4GB RAM, 2x147GB SCSI 15k RAID - Dual-CPU Xeon GHz, 8GB RAM, 320GB HDD - Dual-CPU Xeon GHz, 4GB RAM, 2x73 + 2x36 GB SCSI 10/15k RAID - Dual-CPU Xeon GHz, 32GB RAM, 1,2GB SCSI RAID - Celeron 2.8GHz, 1GB RAM, 80GB HDD - Shared disk capacity: 9TB (SAS/SAS) + 4TB (SAS/GbE) + 18TB backup Workstations: - 1x Intal Xeon E5320, 8GB RAM, 1TB HDD - Linux - 3x Intel Quad-Core Q9550, 4GB RAM, 500HDD - Linux - 4x Intel Dual-Core E6300, 4GB RAM, 1TB HDD - Linux - 3x Dual-CPU Intel Xeon E5300 Series, 16G RAM, 147G SAS 15k, 500G - Linux - 1x Dual-CPU Intel Xeon E5420, 16 GB, 1 TB - 2x Dual-CPU Intel Xeon E5620, 16GB RAM, 500G HDD - 2x Dual-CPU Intel Xeon E5660, 24GB RAM, 500G HDD - 4x Intel Quad-Core Q8300, 4GB RAM, 1TB HDD 2 / 9

3 - 1x AMD Athlon 2600+, 512 MB RAM, 400GB HDD - 1x Dual-CPU Intel Xeon 5620, 8GB RAM, 1TB HDD - 1x Intel Core i3, 8GB RAM, 500 HDD - Windows 7-1x AMD Opteron 268, 5GB RAM, 160 GB HDD - Windows 7-1x AMD Opteron 246, 2GB RAM, 2x 74 GB SAS - Linux - 7x various PCs Laptops: - Lenovo T410 Thinkpad - Windows 7 Pro - Lenovo T420 Thinkpad - Widnows 7 Pro - Lenovo X220 - Windows 7 Pro - 2x IBM T61p Thinkpad - Windows XP Pro - Amilo Pro V2060 Fujitsu-Siemens Laptop - Windows XP Pro - Eurocom P3 1GHz - Windows XP Pro - 2x MSI u100 Notebook - dual boot Linux / Windows XP Pro Other: - Digital Projector S40, 3M, USA - Desktop Scanner CanoScan 3200F, Canon Inc., Japan - Hewlett Packard LaserJet 1150 PCL network printer - Hewlett Packard Color LaserJet 1500 network printer - Lexmark Z31 Color InkJet network printer - HP Color Laserjet CM 2320 FXI MFP - Kyocera C2126MFP 3 / 9

4 COMPUTER SOFTWARE: OS: - Production: mainly i686/x86_64/ia64 Debian GNU/Linux 4.0, SunOS 5.9 and Slackware - Testing: Gentoo/Slackware/Ubuntu Linux, MS Windows Workstations: Ubuntu Linux, Canonical Ltd., WINDOWS XP Professional, Microsoft Corp., USA Molecular Modeling: - AMBER, University of California, San Francisco, USA - CABS, Warsaw University, Warsaw, Poland - CHARMM, Harvard University, Cambridge, USA - CNS, Yale University, New Haven, USA - HYPERCHEM 7.1, Hypercube, Inc., Gainesville, USA - INSIGHT II, Catalyst, Accelrys Software Inc., USA - MODELLER 9v1, University of California, San Francisco, USA - MOLSCRIPT 2.1.2, Avatar Software AB, Sweden - MC-SYM UniversitĂŠ de MontrĂŠal, Canada - NAMD 2.6, Beckman Institute, USA - REFINER, Warsaw University, Warsaw, Poland - ROSETTA, University of Washington, Seattle, USA - SCULPT 3.0, Elsevier MDL, San Ramon, USA - SCWRL 3.0, Fox Chase Cancer Center, Philadelphia, USA - SYBYL 7.3, Tripos, USA - UNRES, University of Gdansk, Gdansk, Poladnd - ERNA3D, PENTAFOLIUM-SOFT, Rosengarten, Germany Docking: 4 / 9

5 - AUTODOCK, The Scripps Research Institute, La Jolla, USA - BIGGER, Universidade Nova de Lisboa, Caparica, Portugal - DOCK, University of California, San Francisco, USA - GRAMM, University of Kansas, Lawrence, USA - HADDOCK, Utrecht University, the Netherlands - RDOCK, Boston University, Boston, USA - SURFLEX, BioPharmics LLC, USA - ZDOCK, Boston University, Boston, USA Sequence Analysis: - Clone Manager 7, Scientific & Educational Software, USA - CLANS & HHpred, Max Planck Institute of Developmental Biology, Tuebingen, Germany - NCBI Toolkit 6.1, NCBI, Bethesda, USA Statistical Analysis: - Statistica 7 & Data Mining, StatSoft., USA Office: - ENDNOTE, ISI ResearchSoft, Berkeley, USA - MS Office XP, Microsoft Corp., USA - VMware Workstation 5, Mware, Inc., USA - CrossOver Office 4.2, CodeWeavers, USA - MS Office 2010, Microsoft Corp., USA - MS Windows 7 Pro, Microsoft Corp., USA 5 / 9

6 WET LAB HARDWARE: Protein and nucleic acid biochemistry: - CD Spectropolarimeter JASCO J-810, Jasco, Japan - ASM-800 DNA Synthesizer, Biosset Ltd., Russia - OPS-201 Oligonucleotide Purification System, Biosset Ltd., Russia - ABI Prism 310 Genetic Analyzer, Capillary DNA Sequencer, Applied Biosystems, USA - Minicycler, MJ Reasearch, USA - MJ Mini Personal Thermal Cycler, Bio-Rad Laboratories, Inc., USA - C1000 Thermal Cycler Chassis, Bio-Rad Laboratories, Inc., USA - Immersion Circulator 7312, PolyScience, USA - Fraction collector, Brandel, USA - Tensor 27, FTIR Spectrometer, Bruker, Germany Chromatographic systems - 2x BioLogic LP, Bio-Rad Laboratories, Inc., USA - AKTA Purifier, GE Healthcare, USA - Avant, GE Healthcare, USA - HPLC, Waters, USA 6 / 9

7 Cell cultures: - 2x Incubated orbital shaker Unitron - plus, Infors AG, Switzerland Electrophoresis: - DNA - horizontal gel electrophoresis systems: - 2x SUBDNA, Kucharczyk TE, Poland - SUBMINI, Kucharczyk TE, Poland - SHU13, Sigma-Aldrich, USA - SHU6, Sigma-Aldrich, USA - Protein - vertical gel electrophoresis systems: - 3x PROTEAN II, Bio-Rad Laboratories, Inc., USA, - MINI PROTEAN tetra electrophoresis system, Bio-Rad Laboratories, Inc., USA, - MINIPOL 2, Kucharczyk TE, Poland - 2x Vertical Electrophoresis system large scale, C.B.S Scientific, USA 7 / 9

8 - Power supplies: - 2x E844, Consort nv, Belgium - E132, Consort nv, Belgium - 2x EV232, Consort nv, Belgium - Protein blotting: - Mini Trans-Blot Cell, Bio-Rad Laboratories, Inc., USA, - 2x Semi-dry blotters SV20-SDB, Sigma-Aldrich, USA - 96 well Dot-Blot Hybridization Manifold, SciePlas Ltd., UK - Microcentrifuges: - Mikro 20, Hettich, Germany D, Eppendorf, Germany R, Eppendorf, Germany , Eppendorf, Germany R, Eppendorf, Germany R, Eppendorf, Germany Other equipment: - ph 211 Microprocessor phmeter, Hanna Instruments, USA - Water Bath (Model WB), Memmert, Germany 8 / 9

9 - Unimax shaker, Heidolph Instruments GmbH & Co. KG, Germany - 3xThermomixer comfort, Eppendorf, Germany - Deepfreezer ULT , Revco Thermo Electron Corporation, USA - Micro-Pulser, Bio-Rad Laboratories, Inc., USA A CATALOG of other equipment freely available to the Bujnicki lab in IIMCB. 9 / 9

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