Distinguishing Hexose Isomers with Water Adduction to Lithiated Monosaccharides Matthew T. Campbell, Dazhe Chen, Gary L. Glish
|
|
- Mitchell Stanley
- 7 years ago
- Views:
Transcription
1 Distinguishing Hexose Isomers with Water Adduction to Lithiated Monosaccharides Matthew T. Campbell, Dazhe Chen, Gary L. Glish Introduction Elucidation of glycans is particularly challenging because the monosaccharide components have similar structures and several stereocenters. Aldohexoses such as glucose are monosaccharides with four chiral centers allowing for 16 diastereomers and other structural isomers such as fructose. Collision induced dissociation does not provide sufficient information to distinguish those isomers. Most methods for indentifying hexose isomers rely on lengthy chromatographic separations or ion mobility separations that often lack the resolving power to discriminate between some isomers. New methods have been developed to distinguish hexose isomers using mass spectrometry without a prior separation step. One method includes prior derivatization of the hexose epimers followed by subsequent CID to yield unique ratios of product ions. Other methods used the fixed ligand kinetic method which eliminates the need for a derivatization reaction, but it requires the addition of a divalent transition metal, a chiral reference molecule (typically an amino acid), and fixed ligand (usually a molecule with a fixed negative charge) which will all adduct with the hexose to form a tertameric complex. CID is used on the resulting complex and the relative
2 intensities of product ions can be used for distinguishing isomers. Here we present a method for distinguishing between biologically relevant hexose isomers (glucose, galactose, mannose, and fructose) by water adduction to the lithiated hexose ions in a quadrupole ion trap. Methods Solutions of 10 μm monosaccharide (D-glucose, D-mannose, D-galactose, D-talose, or D-Fructose shown in scheme 1) with 100 μm lithium acetate were prepared in 50/50 methanol/water. Solutions were analyzed on a Bruker Equire 3000 ion trap mass spectrometer via electrospray ionization. The lithiated monosaccharide was isolated, and a delay was applied before scanning the isolated lithiated ions from the trap to allow for controlled reaction times of water adduction. The total reaction time was measured from isolation of the lithiated monosaccharide (time = 0) to ejection of non-water adducted peak after the set delay. Signal intensity of the unreacted peak at m/z 187 (I 187 ) and the water adducted peak at m/z 205 (I 205 ) were used to study the kinetics of the water adduction reaction. Density functional theory was used to study the binding of lithium to D- glucose, D-mannose, D-galactose, and D-Talose. All computations were performed with the Gaussian 09 suite of programs. All optimizations and frequency
3 calculations were performed using the B3LYP/ G(d,p) level of theory. Because there are hundreds of possible conformations for any of the four hexoses, only the lowest energy conformation for both the α and β anomers were used as starting points. Results Scheme 1: Structures for all five hexoses studied The lithiated isomers of glucose, galactose, mannose, and fructose show no difference in MS/MS spectra after collision induced dissociation. Water adduction rates were measured for each monosaccharide. The signal intensity was measured for both the lithiated monosaccharide (I 187 ) and the corresponding water adducted peak (I 205 ) at reaction times of 11, 21,31,41,51, and 61 ms. Plotting ln ( I 187 ) I 187 +I 205
4 versus time yields a linear plot as expected for pseudo-first order reaction kinetics. The slope of the linear fit applied to each plot is a product of the reaction rate and an unknown concentration of water in the quadrupole ion trap. This slope, however, is constant across experiments done on multiple days, and can be used to distinguish between the four isomers studied (Figure 1). Figure 1: Reaction slope for each hexose Figure 2: Unreactive fraction for each hexose ESI of each hexose produces both reactive structures that forms a water adduct and a non-reactive structure that does not adduct water. After a sufficiently long delay time only the unreactive structure of the lithiated monosaccharides will be present at m/z 187. The final ratio of non-water adducted species (I 187 ) to the total lithiated hexose (I I 205 ) allows for identification of each isomer. These ratios are measured after allowing for reaction times greater than 1000 ms. Previous experiments have shown this to be more than sufficient time to completely deplete all the reactive ion structure(s).
5 Density functional theory was used to study the relative energies of several different lithiation sites for each hexose. After optimizing each hexose structure to the lowest energy conformation α and β anomer for D-glucose, D-galactose, D- mannose, and D-talose (8 structures total), a lithium cation was added. Several structures, each with a lithium cation in a different location relative to the hexose, were optimized. This resulted in several unique lithiation sites for each of the anomers studied. The coordination number for lithium was found for each of the resulting unique structures. In all structures lithium was found to bind bidentate, tridentate, or tetradetate with the oxygen atoms of the hexose. The number of oxygen atoms coordinated to the lithium cation dictates its Lewis acidity. The more hydroxyls bound the lithium, the more the charge is dispersed resulting in the cation being less Lewis acidic. Analogously, binding to fewer oxygen atoms retains the charge and the acidity of the cation. Higher acidity means there is a more favorable reaction between the lithium cation and water. Therefore, it is expected that hexoses that preferentially form bidentate structures over tridentate and tetradentate structures will be more reactive with water, and using this hypothesis the experimental data and theoretical calculations are in good agreement. Both anomers of glucose resulted in primarily bidentate structures. The optimized structures of lithium and galactose yielded mostly bidentate with some low energy tridentate structures (Figure 3). Mannose showed more lower energy
6 trivalent coordination structures, and talose showed almost exclusively tridentate and tetradentate structures. Figure 3: Relative energy for lithiated hexose structures. All energies are relative to the lowest energy structure for each respective hexose
Pesticide Analysis by Mass Spectrometry
Pesticide Analysis by Mass Spectrometry Purpose: The purpose of this assignment is to introduce concepts of mass spectrometry (MS) as they pertain to the qualitative and quantitative analysis of organochlorine
More information3) How many monosaccharides are connected to each other in a disaccharide? A) 1 B) 2 C) 3 D) 4
General, Organic, and Biochemistry, 2e (Frost) HOMEWORK Chapter 6 Carbohydrates Life s Sweet Molecules 6.1 Multiple-Choice 1) Which of the following is a polysaccharide? Glucose Sucrose C) Starch D) Maltose
More informationElectrospray Ion Trap Mass Spectrometry. Introduction
Electrospray Ion Source Electrospray Ion Trap Mass Spectrometry Introduction The key to using MS for solutions is the ability to transfer your analytes into the vacuum of the mass spectrometer as ionic
More informationCHEM 121. Chapter 18. Name: Date: 1. Which of the following compounds is both an aldose and a hexose? A) Page 1
CEM 121. Chapter 18. Name: Date: 1. Which of the following compounds is both an aldose and a hexose? A) B) C) D) Page 1 2. Which of the following structures is that of an L-monosaccharide? A) B) C) D)
More informationSimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data
SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization Jenny Albanese 1, Matthias Glueckmann 2 and Christof Lenz 2 1 AB
More informationSignal, Noise, and Detection Limits in Mass Spectrometry
Signal, Noise, and Detection Limits in Mass Spectrometry Technical Note Chemical Analysis Group Authors Greg Wells, Harry Prest, and Charles William Russ IV, Agilent Technologies, Inc. 2850 Centerville
More informationCHE334 Identification of an Unknown Compound By NMR/IR/MS
CHE334 Identification of an Unknown Compound By NMR/IR/MS Purpose The object of this experiment is to determine the structure of an unknown compound using IR, 1 H-NMR, 13 C-NMR and Mass spectroscopy. Infrared
More informationCatalysis by Enzymes. Enzyme A protein that acts as a catalyst for a biochemical reaction.
Catalysis by Enzymes Enzyme A protein that acts as a catalyst for a biochemical reaction. Enzymatic Reaction Specificity Enzyme Cofactors Many enzymes are conjugated proteins that require nonprotein portions
More informationApplication of a New Immobilization H/D Exchange Protocol: A Calmodulin Study
Application of a New Immobilization H/D Exchange Protocol: A Calmodulin Study Jiang Zhao; Mei Zhu; Daryl E. Gilblin; Michael L. Gross Washington University Center for Biomrdical and Bioorganic Mass Spectrometry:
More informationSimultaneous Metabolite Identification and Quantitation with UV Data Integration Using LightSight Software Version 2.2
Technical ote Simultaneous Metabolite Identification and Quantitation with UV Data Integration Using LightSight Software Version 2.2 Alek. Dooley, Carmai Seto, esham Ghobarah, and Elliott B. Jones verview:
More informationApplication Note # LCMS-66 Straightforward N-glycopeptide analysis combining fast ion trap data acquisition with new ProteinScape functionalities
Application Note # LCMS-66 Straightforward N-glycopeptide analysis combining fast ion trap data acquisition with new ProteinScape functionalities Introduction Glycosylation is one of the most common and
More information0 10 20 30 40 50 60 70 m/z
Mass spectrum for the ionization of acetone MS of Acetone + Relative Abundance CH 3 H 3 C O + M 15 (loss of methyl) + O H 3 C CH 3 43 58 0 10 20 30 40 50 60 70 m/z It is difficult to identify the ions
More informationSimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data
SimGlycan Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization Jenny Albanese1, Matthias Glueckmann2 and Christof Lenz2 1Applied
More informationQuantitative Analysis of Stable Isotopes of Glucose in Blood Plasma Using Quadrupole GC-MS GC/MS Technical Report No.2
IMD--037 Quantitative Analysis of Stable Isotopes of Glucose in Blood Plasma Using Quadrupole G-MS G/MS Technical Report o.2 G/MS Metabolomics & Life Science Project (Yuki Sakamoto, Katsuhiro akagawa,
More informationReview of Chemical Equilibrium 7.51 September 1999. free [A] (µm)
Review of Chemical Equilibrium 7.51 September 1999 Equilibrium experiments study how the concentration of reaction products change as a function of reactant concentrations and/or reaction conditions. For
More informationMass Spectrometry Based Proteomics
Mass Spectrometry Based Proteomics Proteomics Shared Research Oregon Health & Science University Portland, Oregon This document is designed to give a brief overview of Mass Spectrometry Based Proteomics
More informationUHPLC/MS: An Efficient Tool for Determination of Illicit Drugs
Application Note: 439 UHPLC/MS: An Efficient Tool for Determination of Illicit Drugs Guifeng Jiang, Thermo Fisher Scientific, San Jose, CA, USA Key Words Accela UHPLC System MSQ Plus MS Detector Drugs
More informationChemistry. CHEMISTRY SYLLABUS, ASSESSMENT and UNIT PLANNERS GENERAL AIMS. Students should be able to
i CHEMISTRY SYLLABUS, ASSESSMENT and UNIT PLANNERS GENERAL AIMS Students should be able to - apply and use knowledge and methods that are typical to chemistry - develop experimental and investigative skills,
More informationCHEMISTRY STANDARDS BASED RUBRIC ATOMIC STRUCTURE AND BONDING
CHEMISTRY STANDARDS BASED RUBRIC ATOMIC STRUCTURE AND BONDING Essential Standard: STUDENTS WILL UNDERSTAND THAT THE PROPERTIES OF MATTER AND THEIR INTERACTIONS ARE A CONSEQUENCE OF THE STRUCTURE OF MATTER,
More informationMass Spectrometry. Overview
Mass Spectrometry Overview Mass Spectrometry is an analytic technique that utilizes the degree of deflection of charged particles by a magnetic field to find the relative masses of molecular ions and fragments.2
More information13C NMR Spectroscopy
13 C NMR Spectroscopy Introduction Nuclear magnetic resonance spectroscopy (NMR) is the most powerful tool available for structural determination. A nucleus with an odd number of protons, an odd number
More informationIsomers Have same molecular formula, but different structures
Isomers ave same molecular formula, but different structures Constitutional Isomers Differ in the order of attachment of atoms (different bond connectivity) Stereoisomers Atoms are connected in the same
More informationCarbohydrate Analysis: Column Chemistries and Detection
Carbohydrate Analysis: Column Chemistries and Detection Joe Romano Waters Corporation Carbohydrates in Feeds Methodology Forum AOAC 2007 Annual Meeting Anaheim, CA September 18, 2007 2007 Waters Corporation
More information# LCMS-35 esquire series. Application of LC/APCI Ion Trap Tandem Mass Spectrometry for the Multiresidue Analysis of Pesticides in Water
Application Notes # LCMS-35 esquire series Application of LC/APCI Ion Trap Tandem Mass Spectrometry for the Multiresidue Analysis of Pesticides in Water An LC-APCI-MS/MS method using an ion trap system
More informationGENERAL UNKNOWN SCREENING FOR DRUGS IN BIOLOGICAL SAMPLES BY LC/MS Luc Humbert1, Michel Lhermitte 1, Frederic Grisel 2 1
GENERAL UNKNOWN SCREENING FOR DRUGS IN BIOLOGICAL SAMPLES BY LC/MS Luc Humbert, Michel Lhermitte, Frederic Grisel Laboratoire de Toxicologie & Génopathologie, CHRU Lille, France Waters Corporation, Guyancourt,
More informationElectrospray Mass Spectrometry of Tris-acetylacetonatochromium(III)
Electrospray Mass Spectrometry of Tris-acetylacetonatochromium(III) Purpose: Verify the synthesis of the synthesis product, Cr(acac) 3. The presence of any urea containing byproducts will also be determined.
More informationMultiQuant Software 2.0 for Targeted Protein / Peptide Quantification
MultiQuant Software 2.0 for Targeted Protein / Peptide Quantification Gold Standard for Quantitative Data Processing Because of the sensitivity, selectivity, speed and throughput at which MRM assays can
More informationChapter 3 Molecules of Cells
Bio 100 Molecules of cells 1 Chapter 3 Molecules of Cells Compounds containing carbon are called organic compounds Molecules such as methane that are only composed of carbon and hydrogen are called hydrocarbons
More informationThe Synthesis of trans-dichlorobis(ethylenediamine)cobalt(iii) Chloride
CHEM 122L General Chemistry Laboratory Revision 2.0 The Synthesis of trans-dichlorobis(ethylenediamine)cobalt(iii) Chloride To learn about Coordination Compounds and Complex Ions. To learn about Isomerism.
More informationHigh Resolution LC-MS Data Output and Analysis
High Resolution LC-MS Data Output and Analysis Your Sample LC/MS Result Sample Sample Efficient Separation Preparation Introduction Gradient (column) Today Data (computer) LC- MS Ions Detection Ions Separation
More informationWorkshop IIc. Manual interpretation of MS/MS spectra. Ebbing de Jong. Center for Mass Spectrometry and Proteomics Phone (612)625-2280 (612)625-2279
Workshop IIc Manual interpretation of MS/MS spectra Ebbing de Jong Why MS/MS spectra? The information contained in an MS spectrum (m/z, isotope spacing and therefore z ) is not enough to tell us the amino
More informationHow To Use Gc-Ms
The CHROMacademy Essential Guide Understanding GC-MS Analysis Part 1 Speakers John Hinshaw GC Dept. Dean CHROMacademy Tony Taylor Technical Director Crawford Scientific Moderator M ( g ) e M ( g ) 2e Peter
More informationCorrelation of the Mass Spectrometric Analysis of Heat-Treated Glutaraldehyde Preparations to Their 235nm / 280 nm UV Absorbance Ratio
an ABC Laboratories white paper Correlation of the Mass Spectrometric Analysis of Heat-Treated Glutaraldehyde Preparations to Their 235nm / 280 nm UV Absorbance Ratio A. Sen, R. Dunphy, L. Rosik Analytical
More informationSimultaneous qualitative and quantitative analysis using the Agilent 6540 Accurate-Mass Q-TOF
Simultaneous qualitative and quantitative analysis using the Agilent 654 Accurate-Mass Q-TOF Technical Overview Authors Pat Perkins Anabel Fandino Lester Taylor Agilent Technologies, Inc. Santa Clara,
More informationRecognizing Organic Molecules: Carbohydrates, Lipids and Proteins
Recognizing Organic Molecules: Carbohydrates, Lipids and Proteins Oct 15 8:05 PM What is an Organic Molecule? An Organic Molecule is a molecule that contains carbon and hydrogen and oxygen Carbon is found
More informationEleanor Riches Waters Corporation, Manchester, UK INTRODUCTION
X E V O T Q MS W IT H AT MOS P H E RIC P R E S SU R E P HOT O IO NIZ AT IO N (A P P I) SOU RC E: T H E IONIZATION OF COMPOUNDS WITH DIVERSE STRUCTURES USING VITAMINS AS A MODEL Eleanor Riches Waters Corporation,
More informationmethods Electrospray mass spectrometry of human hair wax esters Mark Fitzgerald and Robert C. Murphy 1
Electrospray mass spectrometry of human hair wax esters methods Mark Fitzgerald and Robert C. Murphy 1 Department of Pharmacology, University of Colorado at Denver and Health Sciences Center, Aurora, CO
More informationOverview. Triple quadrupole (MS/MS) systems provide in comparison to single quadrupole (MS) systems: Introduction
Advantages of Using Triple Quadrupole over Single Quadrupole Mass Spectrometry to Quantify and Identify the Presence of Pesticides in Water and Soil Samples André Schreiber AB SCIEX Concord, Ontario (Canada)
More informationDiscovery of Pesticide Protomers Using Routine Ion Mobility Screening
Michael McCullagh, 1 David Eatough, 1 Vincent Hanot, 2 and Séverine Goscinny 2 1 Waters Corporation, Wilmslow, UK 2 Wetenschappelijk Instituut Volksgezondheid Institut Scientifique de Santé Publique, Brussels,
More informationLab #11: Determination of a Chemical Equilibrium Constant
Lab #11: Determination of a Chemical Equilibrium Constant Objectives: 1. Determine the equilibrium constant of the formation of the thiocyanatoiron (III) ions. 2. Understand the application of using a
More informationIdentification of Surfactants by Liquid Chromatography-Mass Spectrometry
Identification of Surfactants by Liquid Chromatography-Mass Spectrometry James Little, Eastman Chemical Company, Kingsport, TN American Society for Mass Spectrometry 2004 Nashville, TN 1 verview Surfactant
More informationBiological Membranes. Impermeable lipid bilayer membrane. Protein Channels and Pores
Biological Membranes Impermeable lipid bilayer membrane Protein Channels and Pores 1 Biological Membranes Are Barriers for Ions and Large Polar Molecules The Cell. A Molecular Approach. G.M. Cooper, R.E.
More informationAmount of Substance. http://www.avogadro.co.uk/definitions/elemcompmix.htm
Page 1 of 14 Amount of Substance Key terms in this chapter are: Element Compound Mixture Atom Molecule Ion Relative Atomic Mass Avogadro constant Mole Isotope Relative Isotopic Mass Relative Molecular
More informationProtein Prospector and Ways of Calculating Expectation Values
Protein Prospector and Ways of Calculating Expectation Values 1/16 Aenoch J. Lynn; Robert J. Chalkley; Peter R. Baker; Mark R. Segal; and Alma L. Burlingame University of California, San Francisco, San
More informationGIANT FREQUENCY SHIFT OF INTRAMOLECULAR VIBRATION BAND IN THE RAMAN SPECTRA OF WATER ON THE SILVER SURFACE. M.E. Kompan
GIANT FREQUENCY SHIFT OF INTRAMOLECULAR VIBRATION BAND IN THE RAMAN SPECTRA OF WATER ON THE SILVER SURFACE M.E. Kompan Ioffe Institute, Saint-Peterburg, Russia kompan@mail.ioffe.ru The giant frequency
More informationMolecular Spectroscopy
Molecular Spectroscopy UV-Vis Spectroscopy Absorption Characteristics of Some Common Chromophores UV-Vis Spectroscopy Absorption Characteristics of Aromatic Compounds UV-Vis Spectroscopy Effect of extended
More informationEnzymes. Enzymes are characterized by: Specificity - highly specific for substrates
Enzymes Enzymes are characterized by: Catalytic Power - rates are 10 6-10 12 greater than corresponding uncatalyzed reactions Specificity - highly specific for substrates Regulation - acheived in many
More informationAB SCIEX TOF/TOF 4800 PLUS SYSTEM. Cost effective flexibility for your core needs
AB SCIEX TOF/TOF 4800 PLUS SYSTEM Cost effective flexibility for your core needs AB SCIEX TOF/TOF 4800 PLUS SYSTEM It s just what you expect from the industry leader. The AB SCIEX 4800 Plus MALDI TOF/TOF
More informationWhat happens to the food we eat? It gets broken down!
Enzymes Essential Questions: What is an enzyme? How do enzymes work? What are the properties of enzymes? How do they maintain homeostasis for the body? What happens to the food we eat? It gets broken down!
More informationRequired Reading Material.
JF Chemistry 1101 2014-2015 Introduction to Physical Chemistry: Acid Base and Solution Equilibria. Professor Mike Lyons School of Chemistry melyons@tcd.ie Required Reading Material. Kotz, Treichel and
More informationChemistry 4631. Instrumental Analysis Lecture 1. Chem 4631
Chemistry 4631 Instrumental Analysis Lecture 1 Syllabus Chemistry 4631 Spring 2016 Lecture: MWF 9:00 9:50 a.m. Chem 352 Attendance is expected. Instructor: Dr. Teresa D. Golden Chem 279, 565-2888, tgolden@unt.edu.
More informationNote: Please use the actual date you accessed this material in your citation.
MIT OpenCourseWare http://ocw.mit.edu 5.111 Principles of Chemical Science, Fall 2005 Please use the following citation format: Sylvia Ceyer and Catherine Drennan, 5.111 Principles of Chemical Science,
More informationdissociation: projectile charge and Furthermore we have observed that with increasing impact energy the kinetic energy of the fragments
Kinetic energy release in molecular dissociation: projectile charge and collision energy dependence Dissociation products of CO have been measured in coincidence with each other for collisions with He
More informationNANOCOMPOSIX'S GUIDE TO ICP-MS MEASUREMENT
NANOCOMPOSIX'S GUIDE TO ICP-MS MEASUREMENT AND ANALYSIS SEPTEMBER 2012, V 1.1 4878 RONSON CT STE K SAN DIEGO, CA 92111 858-565 - 4227 NANOCOMPOSIX.COM Note to the Reader: We at nanocomposix have published
More informationBackground A nucleus with an odd atomic number or an odd mass number has a nuclear spin that can be observed by NMR spectrometers.
NMR Spectroscopy I Reading: Wade chapter, sections -- -7 Study Problems: -, -7 Key oncepts and Skills: Given an structure, determine which protons are equivalent and which are nonequivalent, predict the
More informationMolecule Projections
Key Definitions ü Stereochemistry refers to the chemistry in 3 dimensions (greek stereos = solid). This science was created by Pasteur (1860), van Hoff et LeBel (1874). ü Stereisomers are isomeric molecules
More informationUltraviolet Spectroscopy
Ultraviolet Spectroscopy The wavelength of UV and visible light are substantially shorter than the wavelength of infrared radiation. The UV spectrum ranges from 100 to 400 nm. A UV-Vis spectrophotometer
More informationCHAPTER 6 AN INTRODUCTION TO METABOLISM. Section B: Enzymes
CHAPTER 6 AN INTRODUCTION TO METABOLISM Section B: Enzymes 1. Enzymes speed up metabolic reactions by lowering energy barriers 2. Enzymes are substrate specific 3. The active site in an enzyme s catalytic
More informationBrønsted-Lowry Acids and Bases
Brønsted-Lowry Acids and Bases 1 According to Brønsted and Lowry, an acid-base reaction is defined in terms of a proton transfer. By this definition, the reaction of Cl in water is: Cl(aq) + Cl (aq) +
More informationMass Spectrometry Signal Calibration for Protein Quantitation
Cambridge Isotope Laboratories, Inc. www.isotope.com Proteomics Mass Spectrometry Signal Calibration for Protein Quantitation Michael J. MacCoss, PhD Associate Professor of Genome Sciences University of
More informationAMD Analysis & Technology AG
AMD Analysis & Technology AG Application Note 120419 Author: Karl-Heinz Maurer APCI-MS Trace Analysis of volatile organic compounds in ambient air A) Introduction Trace analysis of volatile organic compounds
More information6.5 Periodic Variations in Element Properties
324 Chapter 6 Electronic Structure and Periodic Properties of Elements 6.5 Periodic Variations in Element Properties By the end of this section, you will be able to: Describe and explain the observed trends
More informationAP Chemistry A. Allan Chapter 8 Notes - Bonding: General Concepts
AP Chemistry A. Allan Chapter 8 Notes - Bonding: General Concepts 8.1 Types of Chemical Bonds A. Ionic Bonding 1. Electrons are transferred 2. Metals react with nonmetals 3. Ions paired have lower energy
More informationProteomics in Practice
Reiner Westermeier, Torn Naven Hans-Rudolf Höpker Proteomics in Practice A Guide to Successful Experimental Design 2008 Wiley-VCH Verlag- Weinheim 978-3-527-31941-1 Preface Foreword XI XIII Abbreviations,
More informationSummary of the characteristics of different mass analyzers
Summary of the characteristics of different mass analyzers All mass spectrometers combine ion formation, mass analysis, and ion detection. This discussion is concerned with how various mass analyzers are
More information1 The water molecule and hydrogen bonds in water
The Physics and Chemistry of Water 1 The water molecule and hydrogen bonds in water Stoichiometric composition H 2 O the average lifetime of a molecule is 1 ms due to proton exchange (catalysed by acids
More informationTime-of-Flight Mass Spectrometry
Time-of-Flight Mass Spectrometry Technical Overview Introduction Time-of-flight mass spectrometry (TOF MS) was developed in the late 1940 s, but until the 1990 s its popularity was limited. Recent improvements
More informationElemental Analyses by ICP-AES
Elemental Analyses by ICP-AES Henry Gong, Senior Analytical Chemist September 10, 2008 ICP-AES inductively coupled plasma atomic emission spectrophotometry Electrons of an atom absorb energy and jump to
More informationOrganic Molecules of Life - Exercise 2
Organic Molecules of Life - Exercise 2 Objectives -Know the difference between a reducing sugar and a non-reducing sugar. -Distinguish Monosaccharides from Disaccharides and Polysaccharides -Understand
More informationBulletin 887B. HPLC Carbohydrate Column Selection Guide
9 North Harrison Road Bellefonte, PA -00 USA Telephone 00-- -9- Fax 00--0-9-0 email: supelco@sial.com sigma-aldrich.com/supelco HPLC Carbohydrate Column Selection Guide Because carbohydrates exhibit a
More informationMS/MS analysis of Polyphenols
Purdue-UAB Botanicals Center for Age-Related Disease MS/MS analysis of Polyphenols Jeevan Prasain Ph.D. Pharmacology & Toxicology UAB Polyphenols H Caffeic acid Phenolic acids and derivatives H EGC (Flavanol)
More informationChem101: General Chemistry Lecture 9 Acids and Bases
: General Chemistry Lecture 9 Acids and Bases I. Introduction A. In chemistry, and particularly biochemistry, water is the most common solvent 1. In studying acids and bases we are going to see that water
More informationBruker ToxScreener TM. Innovation with Integrity. A Comprehensive Screening Solution for Forensic Toxicology UHR-TOF MS
Bruker ToxScreener TM A Comprehensive Screening Solution for Forensic Toxicology Innovation with Integrity UHR-TOF MS ToxScreener - Get the Complete Picture Forensic laboratories are frequently required
More informationSolid Phase Peptide Synthesis
Solid Phase Peptide Synthesis Fischer Projections revisited C C C Remember that group rotations are always allowed C C 80 rotations of entire molecule are allowed C 80 C 90 rotations of entire molecule
More informationamazon SL Innovation with Integrity Setting New Standards in Performance, Simplicity and Value Ion Trap MS
amazon SL Setting New Standards in Performance, Simplicity and Value Innovation with Integrity Ion Trap Best-In-Class Ion Trap Mass Spectrometer for Routine Analysis The amazon SL entry-level system is
More informationAdvantages of Polar, Reversed- Phase HPLC Columns for the Analysis of Drug Metabolites
Advantages of Polar, Reversed- Phase HPLC Columns for the Analysis of Drug Metabolites Carmen T. Santasania and David S. Bell SUPELCO, 595 North Harrison Road, Bellefonte, PA 16823 T404045 GUS Abstract
More informationTheme 3: Bonding and Molecular Structure. (Chapter 8)
Theme 3: Bonding and Molecular Structure. (Chapter 8) End of Chapter questions: 5, 7, 9, 12, 15, 18, 23, 27, 28, 32, 33, 39, 43, 46, 67, 77 Chemical reaction valence electrons of atoms rearranged (lost,
More informationBackground Information
1 Gas Chromatography/Mass Spectroscopy (GC/MS/MS) Background Information Instructions for the Operation of the Varian CP-3800 Gas Chromatograph/ Varian Saturn 2200 GC/MS/MS See the Cary Eclipse Software
More informationProteinPilot Report for ProteinPilot Software
ProteinPilot Report for ProteinPilot Software Detailed Analysis of Protein Identification / Quantitation Results Automatically Sean L Seymour, Christie Hunter SCIEX, USA Pow erful mass spectrometers like
More informationelectron does not become part of the compound; one electron goes in but two electrons come out.
Characterization Techniques for Organic Compounds. When we run a reaction in the laboratory or when we isolate a compound from nature, one of our first tasks is to identify the compound that we have obtained.
More information5.111 Principles of Chemical Science
MIT OpenCourseWare http://ocw.mit.edu 5.111 Principles of Chemical Science Fall 2008 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms. 5.111 Principles
More informationA REVIEW OF GENERAL CHEMISTRY: ELECTRONS, BONDS AND MOLECULAR PROPERTIES
A REVIEW OF GENERAL CEMISTRY: ELECTRONS, BONDS AND MOLECULAR PROPERTIES A STUDENT SOULD BE ABLE TO: 1. Draw Lewis (electron dot and line) structural formulas for simple compounds and ions from molecular
More informationProteinScape. Innovation with Integrity. Proteomics Data Analysis & Management. Mass Spectrometry
ProteinScape Proteomics Data Analysis & Management Innovation with Integrity Mass Spectrometry ProteinScape a Virtual Environment for Successful Proteomics To overcome the growing complexity of proteomics
More informationSpectrophotometry and the Beer-Lambert Law: An Important Analytical Technique in Chemistry
Spectrophotometry and the Beer-Lambert Law: An Important Analytical Technique in Chemistry Jon H. Hardesty, PhD and Bassam Attili, PhD Collin College Department of Chemistry Introduction: In the last lab
More informationIR Applied to Isomer Analysis
DiscovIR-LC TM Application Note 025 April 2008 Deposition and Detection System IR Applied to Isomer Analysis Infrared spectra provide valuable information about local configurations of atoms in molecules.
More informationWater. Definition: A mole (or mol ) Water can IONIZE transiently. NONpolar covalent molecules do not dissolve in water + + + + + + + + + + + + + + + +
Today s Topics Polar Covalent Bonds ydrogen bonding Properties of water p Water C bonds are Nonpolar Will these molecules dissolve in water? Start Macromolecules Carbohydrates & Lipids Sept 4, 05 Why are
More informationAiping Lu. Key Laboratory of System Biology Chinese Academic Society APLV@sibs.ac.cn
Aiping Lu Key Laboratory of System Biology Chinese Academic Society APLV@sibs.ac.cn Proteome and Proteomics PROTEin complement expressed by genome Marc Wilkins Electrophoresis. 1995. 16(7):1090-4. proteomics
More informationAn acid is a substance that produces H + (H 3 O + ) Ions in aqueous solution. A base is a substance that produces OH - ions in aqueous solution.
Chapter 8 Acids and Bases Definitions Arrhenius definitions: An acid is a substance that produces H + (H 3 O + ) Ions in aqueous solution. A base is a substance that produces OH - ions in aqueous solution.
More informationWeight Loss Determined from Mass Spectrometry Trend Data in a Thermogravimetric/Mass Spectrometer System
Weight Loss Determined from Mass Spectrometry Trend Data in a Thermogravimetric/Mass Spectrometer System Carlton G. Slough TA Instruments, 109 Lukens Drive, New Castle DE 19720, USA ABSTRACT The use of
More informationTopic 8 Acids and bases 6 hours
Topic 8 Acids and bases 6 hours Hydronium ion (H3O + ) = more stable form of hydrogen ion (H + ) H + + H2O H3O + 8.1 Theories of acids and bases 2 hours 1. Arrhenius H-X / M-OH ACID a substance that dissociates
More informationCombinatorial Biochemistry and Phage Display
Combinatorial Biochemistry and Phage Display Prof. Valery A. Petrenko Director - Valery Petrenko Instructors Galina Kouzmitcheva and I-Hsuan Chen Auburn 2006, Spring semester COMBINATORIAL BIOCHEMISTRY
More informationCHM333 LECTURE 13 14: 2/13 15/12 SPRING 2012 Professor Christine Hrycyna
INTRODUCTION TO ENZYMES Enzymes are usually proteins (some RNA) In general, names end with suffix ase Enzymes are catalysts increase the rate of a reaction not consumed by the reaction act repeatedly to
More informationAbsoluteIDQ p180 Kit. Targeted Metabolite Identifi cation and Quantifi cation. Bringing our targeted metabolomics expertise to your lab.
AbsoluteIDQ p180 Kit Targeted Metabolite Identifi cation and Quantifi cation Bringing our targeted metabolomics expertise to your lab. The Biocrates AbsoluteIDQ p180 mass spectrometry Assay Preparation
More informationWhat does pka tell you?
ph and pka What does pka tell you? pka tells you if a given molecule is going to either give a proton to water at a certain ph, or remove a proton A pka of 2 for substance X means that at a ph of 2, X
More informationph: Measurement and Uses
ph: Measurement and Uses One of the most important properties of aqueous solutions is the concentration of hydrogen ion. The concentration of H + (or H 3 O + ) affects the solubility of inorganic and organic
More informationChem 1B Saddleback College Dr. White 1. Experiment 8 Titration Curve for a Monoprotic Acid
Chem 1B Saddleback College Dr. White 1 Experiment 8 Titration Curve for a Monoprotic Acid Objectives To learn the difference between titration curves involving a strong acid with a strong base and a weak
More informationIntroduction to Proteomics 1.0
Introduction to Proteomics 1.0 CMSP Workshop Tim Griffin Associate Professor, BMBB Faculty Director, CMSP Objectives Why are we here? For participants: Learn basics of MS-based proteomics Learn what s
More information10.1 The function of Digestion pg. 402
10.1 The function of Digestion pg. 402 Macromolecules and Living Systems The body is made up of more than 60 % water. The water is found in the cells cytoplasm, the interstitial fluid and the blood (5
More informationUsing Natural Products Application Solution with UNIFI for the Identification of Chemical Ingredients of Green Tea Extract
Using Natural Products Application Solution with UNIFI for the Identification of Chemical Ingredients of Green Tea Extract Lirui Qiao, 1 Rob Lewis, 2 Alex Hooper, 2 James Morphet, 2 Xiaojie Tan, 1 Kate
More information