Curriculum Vitae. Team Leader, Synthetic Molecular Biology Team, RIKEN Center for Life Science Technologies. President & CEO, TagCyx Biotechnologies
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1 Curriculum Vitae Name: Position: Ichiro Hirao Team Leader, Synthetic Molecular Biology Team, RIKEN Center for Life Science Technologies President & CEO, TagCyx Biotechnologies Visiting Professor, Graduate School of Medical Life Science, Yokohama City University Visiting Professor, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology Visiting Professor, Graduate School of Chemical Sciences and Engineering, Hokkaido University Address: RIKEN Center for Life Science Technologies Suehiro, Tsurumi-ku, Yokohama, Kanagawa , Japan Tel: Fax: Education: 1978 B.Eng. Department of Industrial Chemistry, Faculty of Engineering, Shizuoka University Ph.D. Department of Chemistry, Faculty of Science, Tokyo Institute of Technology. Occupation: Assistant professor, Department of Industrial Chemistry, Faculty of Engineering, The University of Tokyo Associate professor, Laboratory of Pharmaceutical Chemistry, Tokyo College of Pharmacy Associate Scientist, Department of Chemistry, Indiana University Group Leader, Yokoyama CytoLogic Project, ERAO, Japan Science and Technology Corporation Team Leader, Protein Preparation/NMR Facilities, RIKEN Genomic Sciences Center Professor, Research Center for Advanced Science and Technology, The University of Tokyo Senior Visiting Scientist, Protein Research Group, RIKEN Genomic Science Center Team Leader, Protein-Regulating Macromolecules Research Team, Protein Preparation/NMR Facilities, RIKEN Genomic Sciences Center. 1
2 2007-present President & CEO, TagCyx Biotechnologies 2007-present Visiting Professor, Graduate School of Chemical Sciences and Engineering, Hokkaido University Team Leader, Nucleic Acid Synthetic Biology Research Team, Systems and Structural Biology Center, Yokohama Institute, RIKEN 2012-present Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology 2013-present Team Leader, Synthetic Molecular Biology Team, RIKEN Center for Life Science Technologies 2013-present Visiting Professor, Graduate School of Medical Life Science, Yokohama City University Research Interests: Synthetic Biology, Chemical Biology, Bioorganic Chemistry, Molecular Biology, Molecular Evolution, Structural Biology Main Publication Generation of high-affinity DNA aptamers using an expanded genetic alphabet. M. Kimoto, R. Yamashige, K. Matsunaga, S. Yokoyama, I. Hirao, Nat. Biotechnol., 31, (2013). Unnatural base pair systems toward the expansion of the genetic alphabet in the central dogma. I. Hirao, M. Kimoto, Proc. Jpn. Acad. Ser. B Phys. Biol. Sci., 88, (2012). Natural vs artificial creation of base pairs in DNA: origin of nucleobases from the perspectives of unnatural base pair studies. I. Hirao, M. Kimoto, R. Yamashige, Acc. Chem. Res.,45, (2012). Highly specific unnatural base pair systems as a third base pair for PCR amplification. R. Yamashige, M. Kimoto, Y. Takezawa, A. Sato, T. Mitsui, S. Yokoyama, I. Hirao, Nucleic Acids Res., 40, (2012). Unnatural base pair systems for sensing and diagnostic applications. M. Kimoto, R. S. Cox 3rd, I. Hirao, Expert Rev. Mol. Diagn., 11, (2011). A new unnatural base pair system between fluorophore and quencher base analogues for nucleic acid-based imaging technology. 2
3 M. Kimoto, T. Mitsui, R. Yamashige, A. Sato, S. Yokoyama, I. Hirao, J. Am. Chem. Soc., 132, (2010). Site-specific fluorescent probing of RNA molecules by unnatural base-pair transcription for local structural conformation analysis. Y. Hikida, M. Kimoto, S. Yokoyama, I. Hirao, Nature Protocols, 5, (2010). A unique fluorescent base analogue for the expansion of the genetic alphabet. M. Kimoto, T. Mitsui, S. Yokoyama, I. Hirao, J. Am. Chem. Soc., 132, (2010). An unnatural base pair system for efficient PCR amplification and functionalization of DNA molecules. M. Kimoto, R. Kawai, T. Mitsui, S. Yokoyama, I. Hirao, Nucleic Acids Res., 37, e14 (2009). Fluorescent probing for RNA molecules by an unnatural base-pair system. M. Kimoto, T. Mitsui, Y. Harada, A. Sato, S. Yokoyama, I. Hirao, Nucleic Acids Res., 35, (2007). Unnatural base pair systems for DNA/RNA-based biotechnology. I. Hirao, Curr. Op. Chem. Biol., 10, (2006). An unnatural hydrophobic base pair system: site-specific incorporation of nucleotide analogs into DNA and RNA. I. Hirao, M. Kimoto, T. Mitsui, T. Fujiwara, R. Kawai, A. Sato, Y. Harada, S. Yokoyama, Nature Methods, 3, (2006). Site-specific fluorescent labeling of RNA molecules by specific transcription using unnatural base pairs. R. Kawai, M. Kimoto, S. Ikeda, T. Mitsui, M. Endo, S. Yokoyama, I. Hirao, J. Am. Chem. Soc., 127, (2005). Site-specific incorporation of a photo-crosslinking component into RNA by T7 transcription mediated by unnatural base pairs. M. Kimoto, M. Endo, T. Mitsui, T. Okuni, I. Hirao, S. Yokoyama, Chem. & Biol., 11, 3
4 47-55 (2004). An Unnatural Hydrophobic Base Pair with Shape Complementarity between Pyrrole-2-carbaldehyde and 9-Methylimidazo[(4,5)-b]pyridine. T. Mitsui, A. Kitamura, M. Kimoto, T. To, A. Sato, I. Hirao, S. Yokoyama, J. Am. Chem. Soc., 125, (2003). An unnatural base pair for incorporating amino acid analogs into proteins. I. Hirao, T. Ohtsuki, T. Fujiwara, T. Mitsui, T. Yokogawa, T. Okuni, H. Nakayama, K. Takio, T. Yabuki, T. Kigawa, K. Kodama, T. Yokogawa, K. Nishikawa, S. Yokoyama, Nature Biotechnology, 20, (2002). Unnatural base pairs for specific transcription. T. Ohtsuki, M. Kimoto, M. Ishikawa, T. Mitsui, I. Hirao, S. Yokoyama, Proc. Natl. Acad. Sci. USA, 98, (2001). RNA aptamers that bind to and inhibit the ribosome-inactivating protein, pepocin. I. Hirao, K. Madin, Y. Endo, S. Yokoyama, A. D. Ellington, J. Biol. Chem. 275, (2000). The limits of specificity: An experimental analysis with RNA aptamers to MS2 coat protein variants. I. Hirao, M. Spingola, D. Peabody, A. D. Ellington, Molecular Diversity, 4, (1999). Crystal structures of a series of RNA aptamers complexed to the same protein target. S. Rowsell, N. Stonehouse, M. A. Convery, C. J. Adams, A. D. Ellington, I. Hirao, D. S. Peabody, P. G. Stockley, S. E. V. Philips, Nature Structural Biol., 5, (1998). Crystal structure of an RNA aptamer-protein complex at 2.8A resolution. M. A. Convery, S. Rowsell, N. Stonehouse, A. D. Ellington, I. Hirao, J. B. Murray, D. S. Peabody, S. E. V. Phillips, P. G. Stockley, Nature Structural Biol., 5, (1998). GNA-trinucleotide loop sequences producing extraordinarily stable DNA 4
5 mini-hairpins. S. Yoshizawa, G. Kawai, K. Watanabe, K. Miura, I. Hirao, Biochemistry, 36, (1997). Re-creating the RNA world. I. Hirao, A. D. Ellington, Current Biol., 5, (1995). Most compact hairpin-turn structure exerted by a short DNA fragment, d(gcgaagc) in solution: an extraordinarily stable structure resistant to nucleases and heat. I. Hirao, G. Kawai, S. Yoshizawa, Y. Nishimura, Y. Ishido, K. Watanabe, K. Miura, Nucleic Acids Res., 22, (1994). Extraordinarily stable mini-hairpins: electrophoretical and thermal properties of the various sequence variants of d(gcgaaagc) and their effect on DNA sequencing. I. Hirao, Y. Nishimura, Y. Tagawa, K. Watanabe, K. Miura, Nucleic Acids Res., 20, (1992). Extraordinary stable structure of short single-stranded DNA fragments containing a specific base sequence: d(gcgaaagc). I. Hirao, Y. Nishimura, T. Naraoka, K. Watanabe, Y. Arata, K. Miura, Nucleic Acids Res., 17, (1989). 5
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