The Identification of the Budai gohér with Morphological and Molecular Markers and the Separation from the Gohér conculta

Size: px
Start display at page:

Download "The Identification of the Budai gohér with Morphological and Molecular Markers and the Separation from the Gohér conculta"

Transcription

1 The Identification of the Budai with Morphological and Molecular Markers and the Separation from the Gohér conculta Varga, Zs. 1 Bényei, F. 1 Bisztray, Gy. D. 2 Bodor, P. Jr. 1 Deák, T. 2 1 Corvinus University of Budapest, Faculty of Horticulture, Department of Viticulture H-1118 Budapest, Villányi út Corvinus University of Budapest, Faculty of Horticulture, Department of Genetics and Plant Breeding Corresponding author: Varga, Zs. (vargazsuzsanna@yahoo.co.uk, ) Keywords: old grapevine cultivars, Budai, Gohér conculta, morphological description, molecular markers SUMMARY Gohér is an old Hungarian group of cultivars, Budai, which can be found only in grapevine collections, despite its name is not a member of this conculta. The aim of our study was to make the morphological description and molecular separation (SSR analysis) of Budai and Fehér (the white-berried member of the Gohér conculta) besides determining their cultivation value. The detailed description of Budai, as an individual cultivar, can not be found in the accessible ampelographies. It occurs as the synonym of the following cultivars: Juhfark, Fehér, Királyszől ő and Demjén. According to the opinion of some authors the attribute budai indicated cultivars with high yield but lower quality in Tokaj wine-region. Based on their short descriptions Budai may be identified as one of these cultivars: Demjén, Som and Sombajom. In 2005 and 2006 the morphological characteristics of each cultivar were registered with the application of the code numbers of the O.I.V. The size, the shape and the colour of the berry are worth to emphasize, since by its larger, ellipsoidal berries, which are greenish even at maturity, Budai can be easily separated from the Gohér conculta. Six SSR loci were enough to separate Budai and Fehér. INTRODUCTION Budai, which can be found only in grapevine collections, despite its name is not a member of Gohér conculta, an old Hungarian group of cultivars. Morphological and molecular methods (SSR analysis) are able to separate Budai and Fehér (the white-berried member of the Gohér conculta). The detailed description of Budai, as an individual cultivar, does not occur in the accessible ampelographies. BALASSA (1991) claims that the attribute budai indicated cultivars with high yield but lower quality in Tokaj. NÉMETH (1970) refers it as the synonym of Juhfark, Fehér and Demjén. In author s Ampelography the above-mentioned Demjén can be found among collected cultivars, according to its short description it is equal with the Budai investigated by us. According to BALASSA (1991) the name Demjén occurs in writing first in 1632, though author also declares, it couldn t be a very widespread cultivar, because after the disaster of phylloxera it could not be found anymore. In the Ampelography by NÉMETH (1970) Demjén also appears amongst the synonyms of Fehér and Királyszől ő. The origin of the name probably can be attached to the patron saint of pharmacists and the supposed medicative effect of the cultivar (LŐRINCZ-BÉNYEI- ZANATHY-VARGA, 2004). BALASSA (1991) also mentions other cultivars, such as

2 Somszől ő, Sombajom and Som. Attribute som, which word exactly means cornel, relates to the shape of the berry, namely it represents a cultivar with longish berries. The word bajom, which has several variants, is of unknown origin. According to some opinions it refers to an early-ripening sort of Gohér with large berries and thick berry-skin. Conculta, which is a taxonomic term, means group of cultivars, its members can be distinguished by the colour of the berry, the autumn colouring of leaves and sometimes by the colour of canes (CSEPREGI-ZILAI, 1988) Fehér (one of its synonyms is Török ) is the white-berried member of the Gohér conculta. Probably it is of Hungarian origin, according to the natural system it belongs to convar. pontica subconvar. balcanica provar. mesocarpa subprovar. Hungarica (NÉMETH, 1970). Two subcultivars of Fehér is known: Sárga (yellow) and Zöld (green) (HAJDU, 2003). High number of its synonyms refers that it may be one of our oldest-grown cultivars (HEGEDÜS-KOZMA-NÉMETH, 1966). It is consumed as both wine grape and fresh grape (MOLNÁR, 1897), it also occurs in the book about table grapes by KOZMA (1961). It used to have significant role primarily in the wine-regions of Tokaj, Pécs and the Balaton Highland. Because of its female flowers it needs allogamy, consequently spread of pure plantations, respectively the low yield derived from it, caused its supplanting (LŐRINCZ-BÉNYEI-ZANATHY-VARGA, 2004). Currently it can be planted for experimental growing in Tokaj again (HARSÁNYI-MÁDI, 2005). Beside morphological methods there are molecular ways for identification, clone selection (VIGNANI et al., 1996; REGNER et al., 2000), creation and review of cultivar collections (LEFORT and ROUBELAKIS-ANGELAKIS, 2001; BOCCACCI et al., 2005), just like checking parent-offspring connections (DETTWEILER et al., 2000). Microsatellites (LITT and LUTTY, 1989) also known as SSR (JACOB et al., 1991) are polymorphic DNA markers, with co-dominant inheritance, according to the Mendelian laws. With special primers, this method could be automatised by PCR (Polymerase Chain Reaction) and the results are easily changeable between laboratories (WEBER and MAY, 1989; YAMAMOTO et al., 2002). THOMAS and SCOTT (1993) was the first who used the repeatable sequences to make distinction between grape cultivars. A few years later, some trends started to be evolved according to the necessity. METHODS AND MATERIALS The investigation was carried out and samples were collected in the vineyard of Tokaj Oremus Kft. in Mandolás-dűl ő (plot of land), west from the village Tolcsva, Hungary from 2004 to Morphological description In 2005 and 2006 the morphological characteristics of each cultivar were registered with the application of the code numbers of the O.I.V. The dates of the phenological stages were also registered. Vegetative and generative production Vegetative production can be characterised by the intensity of shoot-growth. The changes of shoot-length were recorded until the first topping. Regarding generative production weight of berries, sugar content, titrable acidity and ph of the juice were measured weekly during the ripening period, having used the general methods of viticultural examinations, such as titration, determination of reductive sugar content etc. In addition at maturity the distribution of berries regarding their size was measured. It is related to the percentage of berry-set, namely irregularly-fertilized berries are only half or quarter of normal-sized berries originated from double-fertilization. Since investigations of

3 the former cultivars of Tokaj were carried out in the wine-region, the ratio of sound, rotten and noble-rotted berries were also recorded. DNA extraction and SSR analysis The DNA was extracted from both samples (shoot tip) with the DNEasy Plant Mini Kit (Qiagen), according to the protocol of the manufacturing company. Follow-up the concentrations of the extracted DNA samples were measured by the NanoDrop ND-1000 spectrophotometer (NanoDrop Ltd.). Peltier PTC-200 (PTC200) DNA Engine Thermal Cycler (MJ Research) has used to perform the PCR with the following program: pre-denaturation at 94 C for 10 minutes, 2 minutes denaturation at 94 C, 44 cycles of denaturation 1 min. at 94 C, annealing for 45 sec. at 52 C and extension for 1 min. at 72 C. Post cycle for 7 min. at 72 C. Seven microsatellite primers were used in this work: VrZag21, VrZag62, VrZag79 (SEFC et al., 1999), VvMD5, VvMD7 (BOWERS et al., 1996), VvMD27 (BOWERS et al., 1999), and VvS2 (THOMAS et al., 1993). Fluorescent dye (6-FAM) has applied to detect one of the primers in each primer pairs (Applied Biosystems). Electrophoresis: 1 % gel was made for this step (Sigma A 5093), in TAE buffer the gel in 120 W was electrophoresed. The fragment length-analysis was made with the ABI Prism 3100 fragment-analysator. RESULTS AND DISCUSSION Morphological description In case of morphological description more than 15 differences were found among from about 90 characteristics. Namely Budai had larger leaves, longer tendrils, longer petioles, shorter and smaller bunches, longer internodes of canes. It is oval-berried, it is harder to remove berries from the stalk. However Fehér had almost round, juicier berries with thinner skin. Cultivars also differed regarding the colour of young leaves and the density of prostrate hairs of shoots. Vegetative and generative production There was no significant difference found in case of intensity of shoot-growth in either year. In case of harvests (Table 1.) the sugar density of Budai was at least 2 Brix higher in every vintage. The total acidity of the cultivars didn t differ significantly. Regarding the distribution of different-sized berries (Figure 1. and 2.) because of their female flowers both cultivars had serious setting problems in 2004 and 2005, namely the ratio of berries originated from double-fertilization was lower than 20 %. In 2006 only a moderated ratio of irregularly-fertilized berries was recorded at both cultivars. Significant difference between cultivars was not registered. Only in 2004 a greater development of noble rot (Figure 3.) was recorded, ratio of different berries was similar in case of the cultivars. In 2005 Fehér had more sound berries, though even Budai rather rotted then. In 2006 about the same percentage of berries remained sound. Despite of Fehér produced more noble-rotted berries, The sugar content of Budai was higher. DNA extraction and SSR analysis Table 2. contains the results of SSR analysis. Though the locus VvS2 shows similarity between cultivars, all other loci were different. Consequently six SSR loci were enough to separate Budai and Fehér. REFERENCES

4 BALASSA I. (1991): Tokaj-Hegyalja szőleje és bora. Történeti-néprajzi tanulmány. Tokaj- Hegyaljai ÁG. Borkombinát, Tokaj. BOCCACCI, P.; TORELLO MARINONI, D.; GAMBINO, G.; BOTTA, R.; SCHNEIDER, A. (2005): Genetic characterization of endangered grape cultivars of Reggio Emilia Province. Am. J. Enol. Vitic. 56:4 BOWERS, J.E.; DANGL, G.S.; VIGNANI, R.; MEREDITH, C.P. (1996): Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39: BOWERS, J.E.; DANGL, G.S.; MEREDITH, C.P. (1999): Development and characterization of additional microsatellite DNA markers for grape. American Journal of Enology and Viticulture. 50 (3) p. CSEPREGI P. ZILAI J. (1988): Szőlőfajta-ismeret és használat. Mezőgazdasági Kiadó, Budapest. DETTWEILER, E.; JUNG, A.; ZYPRIANI, E.; TÖPFER, R. (2000): Grapevine cultivar Müller-Thurgau and its true to type descent. Vitis 39 (2): HAJDU E. (2003): Magyar szőlőfajták. Mezőgazda Kiadó, Budapest. HARSÁNYI J. MÁDI R.-NÉ szerk. (2005): Szőlő- és gyümölcsfajták. Nemzeti fajtajegyzék. Szaporításra egyedileg engedélyezett fajták jegyzéke. Országos Mezőgazdasági Minősít ő Intézet, Budapest. HEGEDÜS Á. KOZMA P. NÉMETH M. (1966): A szől ő. Akadémiai Kiadó, Budapest. JACOB, H. J.; LINDPAINTNER, K.; LINCOLN, S.E.; KUSUMI, K.; BUNKER, R.K.; MAO, YI-PEI; GANTEN, D.; DZAU, V.J. and LANDER, E.S. (1991): Genetic mapping of a gene causing hypertensive rat. Cell 67: KOZMA P. (1961): A csemegeszől ő. Mezőgazdasági Kiadó, Budapest. LEFORT, F.; ROUBELAKIS-ANGELAKIS K. K.A. (2001): Genetic comparison of Greek cultivars of Vitis vinifera L. by Nuclear Microsatellite Profiling. Am. J. Enol. Vitic. 52: 2. LITT, M.; LUTY, J.A. (1989): A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet. 44 (3): LŐ RINCZ A., BÉNYEI F., ZANATHY G., VARGA ZS. (2004): A nővirágú fajták a magyar szőlőtermesztésben. Borászati Füzetek, 2004 / 3. (Kutatás) p MOLNÁR I. (1897): Szőlőművelés és Borászat. Budapest. NÉMETH M. (1970): Ampelográfiai album. Termesztett borszőlőfajták 2. Mezőgazdasági Kiadó, Budapest. REGNER, F.; WIEDECK, E.; STADLBAUER, A. (2000): Differentation and identification of White Riesling clones by genetic markers. Vitis 39 (3), p. SEFC, K.M.; REGNER, F.; TURETSCHEK, E.; GLOSSL, J.; STEINKELLNER, H. (1999): Identification of microsatellite sequences in vitis Vitis riparia and their applicability for genotyping of different Vitis species. Genome (42) 1-7 p. THOMAS, M.R.; SCOTT, N.S. (1993): Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor.Appl. Genet. 86: WEBER, J.L.; MAY, P.E. (1989): Abundant class of human DNA polymorhisms which can be typed using the polymerare chain reaction. Am. J. Hum. Genet. 44: VIGNANI, R.; BOWERS, J.E.; MEREDITH, C.P. (1996): Microsatellite DNA polymorphism analysis of clones of Vitis vinifera Sangiovese. Scientia Horticulturae. (65) p. YAMAMOTO, T.; KIMURA, T.; SAWAMURA, Y.; MANABE, T.; KOTOBUKI, K.; HAYASHI, T. (2002): Simple sequence repeat for genetic analysis in pear. Euphytica 124: TABLES AND FIGURES

5 Table 1.: The main qualitative data of vintage of Budai and Fehér (Tolcsva, ) vintage cultivar sugar content (Brix o ) titrable acidity (g/l) Budai 25,1 7 Fehér 23 7,1 Budai 23 8,1 Fehér 20,6 9,7 Budai 25,1 7,1 Fehér 23,2 6,9 Table 2.: Genotypes of the investigated cultivars at six SSR loci in base pairs locus cultivar VvS2 VvMD5 VvMD7 VvMD27 VrZag62 VrZag79 Fehér aspec aspec Budai Figure 1.: Distribution of different-sized berries of Budai (Tolcsva, )

6 Figure 2.: Distribution of different-sized berries of Fehér (Tolcsva, ) 100% 80% 60% sound berries rotten berries noble-rotted berries 40% 20% 0% Budai Fehér Budai Fehér Budai Fehér Figure 3.: Distribution of sound, rotten and noble-rotted berries of Budai and Fehér (Tolcsva, )

Corvinus University of Budapest

Corvinus University of Budapest Corvinus University of Budapest INVESTIGATION OF VITIS SYLVESTRIS C.C. GMEL. (WILD GRAPE) AND OTHER VITIS TAXA WITH MORPHOLOGICAL CHARACTERS AND MOLECULAR MARKERS PhD. thesis Bodor Péter Budapest 2010

More information

Vitis 41 (2), 83 87 (2002) The parentage of Pos ip bijeli, a major white wine cultivar of Croatia J. PILJAC 1), E. MALETIĆ 2), J.K. KONTIĆ 2), G. S. DANGL 1), I. PEJIĆ 2), N. MIROS EVIĆ 2) and C. P. MEREDITH

More information

TRACING THE PEDIGREE OF CYNTHIANA GRAPE BY DNA MICROSATELLITE MARKERS

TRACING THE PEDIGREE OF CYNTHIANA GRAPE BY DNA MICROSATELLITE MARKERS Proc. Fla. State Hort. Soc. 118:200-204. 2005. TRACING THE PEDIGREE OF CYNTHIANA GRAPE BY DNA MICROSATELLITE MARKERS LELAN PARKER, PATRICIA BORDALLO AND VIOLETA COLOVA* Florida A & M University Center

More information

The Kingroup of the Cultivar Chardonnay Revealed

The Kingroup of the Cultivar Chardonnay Revealed The Kingroup of the Cultivar Chardonnay Revealed M. Di Vecchi Staraz 1,2, V. Laucou 2, J.-M. Boursiquot 2, T. Lacombe 2, D. Varès 3, S. Gerber 4, M. Boselli 1 and P. This 2 1 Dipartimento di Ortoflorofrutticoltura,

More information

ABSTRACT. Promega Corporation, Updated September 2008. http://www.promega.com/pubhub. 1 Campbell-Staton, S.

ABSTRACT. Promega Corporation, Updated September 2008. http://www.promega.com/pubhub. 1 Campbell-Staton, S. A Modified Wizard SV Genomic DNA Purification System Protocol to Purify Genomic DNA... A Modified Wizard SV Genomic DNA Purification System Protocol to Purify Genomic DNA from Shed Reptile Skin ABSTRACT

More information

Introduction To Real Time Quantitative PCR (qpcr)

Introduction To Real Time Quantitative PCR (qpcr) Introduction To Real Time Quantitative PCR (qpcr) SABiosciences, A QIAGEN Company www.sabiosciences.com The Seminar Topics The advantages of qpcr versus conventional PCR Work flow & applications Factors

More information

Isolation and characterization of nine microsatellite loci in the Pale Pitcher Plant. MARGARET M. KOOPMAN*, ELIZABETH GALLAGHER, and BRYAN C.

Isolation and characterization of nine microsatellite loci in the Pale Pitcher Plant. MARGARET M. KOOPMAN*, ELIZABETH GALLAGHER, and BRYAN C. Page 1 of 28 1 1 2 3 PERMANENT GENETIC RESOURCES Isolation and characterization of nine microsatellite loci in the Pale Pitcher Plant Sarracenia alata (Sarraceniaceae). 4 5 6 MARGARET M. KOOPMAN*, ELIZABETH

More information

Research Roadmap for the Future. National Grape and Wine Initiative March 2013

Research Roadmap for the Future. National Grape and Wine Initiative March 2013 Research Roadmap for the Future National Grape and Wine Initiative March 2013 Objective of Today s Meeting Our mission drives the roadmap Our Mission Drive research to maximize productivity, sustainability

More information

Protocols. Internal transcribed spacer region (ITS) region. Niklaus J. Grünwald, Frank N. Martin, and Meg M. Larsen (2013)

Protocols. Internal transcribed spacer region (ITS) region. Niklaus J. Grünwald, Frank N. Martin, and Meg M. Larsen (2013) Protocols Internal transcribed spacer region (ITS) region Niklaus J. Grünwald, Frank N. Martin, and Meg M. Larsen (2013) The nuclear ribosomal RNA (rrna) genes (small subunit, large subunit and 5.8S) are

More information

Rapid Acquisition of Unknown DNA Sequence Adjacent to a Known Segment by Multiplex Restriction Site PCR

Rapid Acquisition of Unknown DNA Sequence Adjacent to a Known Segment by Multiplex Restriction Site PCR Rapid Acquisition of Unknown DNA Sequence Adjacent to a Known Segment by Multiplex Restriction Site PCR BioTechniques 25:415-419 (September 1998) ABSTRACT The determination of unknown DNA sequences around

More information

Chapter 8: Recombinant DNA 2002 by W. H. Freeman and Company Chapter 8: Recombinant DNA 2002 by W. H. Freeman and Company

Chapter 8: Recombinant DNA 2002 by W. H. Freeman and Company Chapter 8: Recombinant DNA 2002 by W. H. Freeman and Company Genetic engineering: humans Gene replacement therapy or gene therapy Many technical and ethical issues implications for gene pool for germ-line gene therapy what traits constitute disease rather than just

More information

Forensic DNA Testing Terminology

Forensic DNA Testing Terminology Forensic DNA Testing Terminology ABI 310 Genetic Analyzer a capillary electrophoresis instrument used by forensic DNA laboratories to separate short tandem repeat (STR) loci on the basis of their size.

More information

The Techniques of Molecular Biology: Forensic DNA Fingerprinting

The Techniques of Molecular Biology: Forensic DNA Fingerprinting Revised Fall 2011 The Techniques of Molecular Biology: Forensic DNA Fingerprinting The techniques of molecular biology are used to manipulate the structure and function of molecules such as DNA and proteins

More information

CCR Biology - Chapter 9 Practice Test - Summer 2012

CCR Biology - Chapter 9 Practice Test - Summer 2012 Name: Class: Date: CCR Biology - Chapter 9 Practice Test - Summer 2012 Multiple Choice Identify the choice that best completes the statement or answers the question. 1. Genetic engineering is possible

More information

Troubleshooting Sequencing Data

Troubleshooting Sequencing Data Troubleshooting Sequencing Data Troubleshooting Sequencing Data No recognizable sequence (see page 7-10) Insufficient Quantitate the DNA. Increase the amount of DNA in the sequencing reactions. See page

More information

mircute mirna qpcr Detection Kit (SYBR Green)

mircute mirna qpcr Detection Kit (SYBR Green) mircute mirna qpcr Detection Kit (SYBR Green) For detection of mirna using real-time RT-PCR (SYBR Green I) www.tiangen.com QP110302 mircute mirna qpcr Detection Kit (SYBR Green) Kit Contents Cat. no. FP401

More information

HiPer RT-PCR Teaching Kit

HiPer RT-PCR Teaching Kit HiPer RT-PCR Teaching Kit Product Code: HTBM024 Number of experiments that can be performed: 5 Duration of Experiment: Protocol: 4 hours Agarose Gel Electrophoresis: 45 minutes Storage Instructions: The

More information

PrimeSTAR HS DNA Polymerase

PrimeSTAR HS DNA Polymerase Cat. # R010A For Research Use PrimeSTAR HS DNA Polymerase Product Manual Table of Contents I. Description...3 II. III. IV. Components...3 Storage...3 Features...3 V. General Composition of PCR Reaction

More information

DNA: A Person s Ultimate Fingerprint

DNA: A Person s Ultimate Fingerprint A partnership between the UAB Center for Community Outreach Development and McWane Center DNA: A Person s Ultimate Fingerprint This project is supported by a Science Education Partnership Award (SEPA)

More information

Malvasia delle Lipari, Malvasia di Sardegna, Greco di Gerace, Malvasia de Sitges and Malvasia dubrovačka synonyms of an old and famous grape cultivar

Malvasia delle Lipari, Malvasia di Sardegna, Greco di Gerace, Malvasia de Sitges and Malvasia dubrovačka synonyms of an old and famous grape cultivar Vitis 45 (2), 69 73 (2006) Malvasia delle Lipari, Malvasia di Sardegna, Greco di Gerace, Malvasia de Sitges and Malvasia dubrovačka synonyms of an old and famous grape cultivar M. CRESPAN 1), F. CABELLO

More information

20-10-2015. DNA profiles in DUS testing of grasses. A new UPOV model? Lolium perenne (perennial ryegrass) Pilot study (2014)

20-10-2015. DNA profiles in DUS testing of grasses. A new UPOV model? Lolium perenne (perennial ryegrass) Pilot study (2014) 2--25 DNA profiles in DUS testing of grasses A new UPOV model? Henk Bonthuis Naktuinbouw Aanvragersoverleg Rvp Wageningsche Berg 9 oktober 25 Lolium perenne (perennial ryegrass) Challenges Genetically

More information

Epstein Barr Virus (Human Herpes virus 4) genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere...

Epstein Barr Virus (Human Herpes virus 4) genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere... TM Primerdesign Ltd TM Primerdesign Ltd Epstein Barr Virus (Human Herpes virus 4) nonglycosylated membrane protein (BNRF1) gene genesig Standard Kit 150 tests DNA testing Everything... Everyone... Everywhere...

More information

Mitochondrial DNA Analysis

Mitochondrial DNA Analysis Mitochondrial DNA Analysis Lineage Markers Lineage markers are passed down from generation to generation without changing Except for rare mutation events They can help determine the lineage (family tree)

More information

Annex to the Accreditation Certificate D-PL-13372-01-00 according to DIN EN ISO/IEC 17025:2005

Annex to the Accreditation Certificate D-PL-13372-01-00 according to DIN EN ISO/IEC 17025:2005 Deutsche Akkreditierungsstelle GmbH German Accreditation Body Annex to the Accreditation Certificate D-PL-13372-01-00 according to DIN EN ISO/IEC 17025:2005 Period of validity: 26.03.2012 to 25.03.2017

More information

Validating Microarray Data Using RT 2 Real-Time PCR Products

Validating Microarray Data Using RT 2 Real-Time PCR Products Validating Microarray Data Using RT 2 Real-Time PCR Products Introduction: Real-time PCR monitors the amount of amplicon as the reaction occurs. Usually, the amount of product is directly related to the

More information

Gene Mapping Techniques

Gene Mapping Techniques Gene Mapping Techniques OBJECTIVES By the end of this session the student should be able to: Define genetic linkage and recombinant frequency State how genetic distance may be estimated State how restriction

More information

Lecture 13: DNA Technology. DNA Sequencing. DNA Sequencing Genetic Markers - RFLPs polymerase chain reaction (PCR) products of biotechnology

Lecture 13: DNA Technology. DNA Sequencing. DNA Sequencing Genetic Markers - RFLPs polymerase chain reaction (PCR) products of biotechnology Lecture 13: DNA Technology DNA Sequencing Genetic Markers - RFLPs polymerase chain reaction (PCR) products of biotechnology DNA Sequencing determine order of nucleotides in a strand of DNA > bases = A,

More information

SYBR Green Realtime PCR Master Mix -Plus-

SYBR Green Realtime PCR Master Mix -Plus- Instruction manual SYBR Green Realtime PCR Master Mix -Plus- 0810 F0925K SYBR Green Realtime PCR Master Mix -Plus- Contents QPK-212T 1mLx1 QPK-212 1mLx5 Store at -20 C, protected from light [1] Introduction

More information

quantitative real-time PCR, grain, simplex DNA extraction: PGS0426 RT-PCR: PGS0494 & PGS0476

quantitative real-time PCR, grain, simplex DNA extraction: PGS0426 RT-PCR: PGS0494 & PGS0476 BioScience quantitative real-time PCR, grain, simplex DNA extraction: PGS0426 RT-PCR: PGS0494 & PGS0476 This method describes a Real-time semi-quantitative TaqMan PCR procedure for the determination of

More information

BacReady TM Multiplex PCR System

BacReady TM Multiplex PCR System BacReady TM Multiplex PCR System Technical Manual No. 0191 Version 10112010 I Description.. 1 II Applications 2 III Key Features.. 2 IV Shipping and Storage. 2 V Simplified Procedures. 2 VI Detailed Experimental

More information

Application Guide... 2

Application Guide... 2 Protocol for GenomePlex Whole Genome Amplification from Formalin-Fixed Parrafin-Embedded (FFPE) tissue Application Guide... 2 I. Description... 2 II. Product Components... 2 III. Materials to be Supplied

More information

Human Herpes Virus 4 (Epstein Barr)

Human Herpes Virus 4 (Epstein Barr) Techne qpcr test Human Herpes Virus 4 (Epstein Barr) nonglycosylated membrane protein (BNRF1) gene 150 tests For general laboratory and research use only 1 Introduction to Human Herpes Virus 4 (Epstein

More information

DNA and Forensic Science

DNA and Forensic Science DNA and Forensic Science Micah A. Luftig * Stephen Richey ** I. INTRODUCTION This paper represents a discussion of the fundamental principles of DNA technology as it applies to forensic testing. A brief

More information

GENOTYPING ASSAYS AT ZIRC

GENOTYPING ASSAYS AT ZIRC GENOTYPING ASSAYS AT ZIRC A. READ THIS FIRST - DISCLAIMER Dear ZIRC user, We now provide detailed genotyping protocols for a number of zebrafish lines distributed by ZIRC. These protocols were developed

More information

Brief Communication. B. Freeman, 1 N. Smith, 1 C. Curtis, 1 L. Huckett, 1 J. Mill, 1 and I. W. Craig 1,2

Brief Communication. B. Freeman, 1 N. Smith, 1 C. Curtis, 1 L. Huckett, 1 J. Mill, 1 and I. W. Craig 1,2 Behavior Genetics, Vol. 33, No. 1, January 2003 ( 2003) Brief Communication DNA from Buccal Swabs Recruited by Mail: Evaluation of Storage Effects on Long-term Stability and Suitability for Multiplex Polymerase

More information

GenScript BloodReady TM Multiplex PCR System

GenScript BloodReady TM Multiplex PCR System GenScript BloodReady TM Multiplex PCR System Technical Manual No. 0174 Version 20040915 I Description.. 1 II Applications 2 III Key Features.. 2 IV Shipping and Storage. 2 V Simplified Procedures. 2 VI

More information

High-quality genomic DNA isolation and sensitive mutation analysis

High-quality genomic DNA isolation and sensitive mutation analysis Application Note High-quality genomic DNA isolation and sensitive mutation analysis Izabela Safin, Ivonne Schröder-Stumberger and Peter Porschewski Introduction A major objective of cancer research is

More information

Epstein Barr Virus (Human Herpes virus 4) nonglycosylated membrane protein (BNRF1) gene. genesig Advanced Kit. DNA testing

Epstein Barr Virus (Human Herpes virus 4) nonglycosylated membrane protein (BNRF1) gene. genesig Advanced Kit. DNA testing TM Primerdesign Ltd TM Primerdesign Ltd Epstein Barr Virus (Human Herpes virus 4) nonglycosylated membrane protein (BNRF1) gene genesig Advanced Kit 150 tests DNA testing Everything... Everyone... Everywhere...

More information

Human Herpes Virus 1 (Herpes simplex type 1) genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere...

Human Herpes Virus 1 (Herpes simplex type 1) genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere... TM Primerdesign Ltd TM Primerdesign Ltd Human Herpes Virus 1 (Herpes simplex type 1) Capsid assembly and DNA maturation gene genesig Standard Kit 150 tests DNA testing Everything... Everyone... Everywhere...

More information

Commonly Used STR Markers

Commonly Used STR Markers Commonly Used STR Markers Repeats Satellites 100 to 1000 bases repeated Minisatellites VNTR variable number tandem repeat 10 to 100 bases repeated Microsatellites STR short tandem repeat 2 to 6 bases repeated

More information

RealStar HBV PCR Kit 1.0 11/2012

RealStar HBV PCR Kit 1.0 11/2012 RealStar HBV PCR Kit 1.0 11/2012 RealStar HBV PCR Kit 1.0 For research use only! (RUO) Product No.: 201003 96 rxns INS-201000-GB-02 Store at -25 C... -15 C November 2012 altona Diagnostics GmbH Mörkenstraße

More information

DNA Sequence Analysis

DNA Sequence Analysis DNA Sequence Analysis Two general kinds of analysis Screen for one of a set of known sequences Determine the sequence even if it is novel Screening for a known sequence usually involves an oligonucleotide

More information

Essentials of Real Time PCR. About Sequence Detection Chemistries

Essentials of Real Time PCR. About Sequence Detection Chemistries Essentials of Real Time PCR About Real-Time PCR Assays Real-time Polymerase Chain Reaction (PCR) is the ability to monitor the progress of the PCR as it occurs (i.e., in real time). Data is therefore collected

More information

CLONE BREEDING AND CLONE USING OF OLD HUNGARICA WHITE WINE VARIETIES. hajdu.e@szbkik.hu

CLONE BREEDING AND CLONE USING OF OLD HUNGARICA WHITE WINE VARIETIES. hajdu.e@szbkik.hu CLONE BREEDING AND CLONE USING OF OLD HUNGARICA WHITE WINE VARIETIES Hajdu, E. 1 ; Májer, J. 2 ; Kozma, P. 3 ; Marcinkó, F. 4 ; Kocsis, L. 5 1 Research Institute for Viticulture and Enology, H-6000 Kecskemét,

More information

1/12 Dideoxy DNA Sequencing

1/12 Dideoxy DNA Sequencing 1/12 Dideoxy DNA Sequencing Dideoxy DNA sequencing utilizes two steps: PCR (polymerase chain reaction) amplification of DNA using dideoxy nucleoside triphosphates (Figures 1 and 2)and denaturing polyacrylamide

More information

Quantifiler Human DNA Quantification Kit Quantifiler Y Human Male DNA Quantification Kit

Quantifiler Human DNA Quantification Kit Quantifiler Y Human Male DNA Quantification Kit Product Bulletin Human Identification Quantifiler Human DNA Quantification Kit Quantifiler Y Human Male DNA Quantification Kit The Quantifiler kits produce reliable and reproducible results, helping to

More information

Terra PCR Direct Polymerase Mix User Manual

Terra PCR Direct Polymerase Mix User Manual Clontech Laboratories, Inc. Terra PCR Direct Polymerase Mix User Manual Cat. Nos. 639269, 639270, 639271 PT5126-1 (031416) Clontech Laboratories, Inc. A Takara Bio Company 1290 Terra Bella Avenue, Mountain

More information

Methylation Analysis Using Methylation-Sensitive HRM and DNA Sequencing

Methylation Analysis Using Methylation-Sensitive HRM and DNA Sequencing APPLICATION NOTE Methylation Analysis Using Methylation-Sensitive HRM and DNA Sequencing Methylation Analysis Using Methylation Sensitive HRM and DNA Sequencing Abstract DNA methylation is a key epigenetic

More information

Biotechnology: DNA Technology & Genomics

Biotechnology: DNA Technology & Genomics Chapter 20. Biotechnology: DNA Technology & Genomics 2003-2004 The BIG Questions How can we use our knowledge of DNA to: diagnose disease or defect? cure disease or defect? change/improve organisms? What

More information

The Chinese University of Hong Kong School of Life Sciences Biochemistry Program CUGEN Ltd.

The Chinese University of Hong Kong School of Life Sciences Biochemistry Program CUGEN Ltd. The Chinese University of Hong Kong School of Life Sciences Biochemistry Program CUGEN Ltd. DNA Forensic and Agarose Gel Electrophoresis 1 OBJECTIVES Prof. Stephen K.W. Tsui, Dr. Patrick Law and Miss Fion

More information

Sangiovese and Garganega are two key varieties of the Italian grapevine assortment evolution

Sangiovese and Garganega are two key varieties of the Italian grapevine assortment evolution Vitis 47 (2), 97 104 (2008) Sangiovese and Garganega are two key varieties of the Italian grapevine assortment evolution M. CRESPAN 1), A. CALÒ 1), S. GIANNETTO 1), A. SPARACIO 2), P. STORCHI 3) and A.

More information

Stratagene QPCR Mouse Reference Total RNA

Stratagene QPCR Mouse Reference Total RNA Stratagene QPCR Mouse Reference Total RNA Instruction Manual Catalog #750600 Revision C.0 For Research Use Only. Not for use in diagnostic procedures. 750600-12 LIMITED PRODUCT WARRANTY This warranty limits

More information

IMBB 2013. Genomic DNA purifica8on

IMBB 2013. Genomic DNA purifica8on IMBB 2013 Genomic DNA purifica8on Why purify DNA? The purpose of DNA purifica8on from the cell/8ssue is to ensure it performs well in subsequent downstream applica8ons, e.g. Polymerase Chain Reac8on (PCR),

More information

FEASIBILITY OF CONDUCTING PCR-BASED DNA ANALYSIS AT THE CRIME SCENE

FEASIBILITY OF CONDUCTING PCR-BASED DNA ANALYSIS AT THE CRIME SCENE FEASIBILITY OF CONDUCTING PCR-BASED DNA ANALYSIS AT THE CRIME SCENE Eduardo Ribeiro Paradela 1,2, Debra Glidewell 1, Felipe Konotop 1,2, Elizeu Fagundes de Carvalho 2 and Cecelia Crouse 1. 1 -Palm Beach

More information

Biology Behind the Crime Scene Week 4: Lab #4 Genetics Exercise (Meiosis) and RFLP Analysis of DNA

Biology Behind the Crime Scene Week 4: Lab #4 Genetics Exercise (Meiosis) and RFLP Analysis of DNA Page 1 of 5 Biology Behind the Crime Scene Week 4: Lab #4 Genetics Exercise (Meiosis) and RFLP Analysis of DNA Genetics Exercise: Understanding how meiosis affects genetic inheritance and DNA patterns

More information

DNA PROFILING IN FORENSIC SCIENCE

DNA PROFILING IN FORENSIC SCIENCE DA PROFILIG I FORESIC SCIECE DA is the chemical code that is found in every cell of an individual's body, and is unique to each individual. Because it is unique, the ability to examine DA found at a crime

More information

Amazing DNA facts. Hands-on DNA: A Question of Taste Amazing facts and quiz questions

Amazing DNA facts. Hands-on DNA: A Question of Taste Amazing facts and quiz questions Amazing DNA facts These facts can form the basis of a quiz (for example, how many base pairs are there in the human genome?). Students should be familiar with most of this material, so the quiz could be

More information

Real-Time PCR Vs. Traditional PCR

Real-Time PCR Vs. Traditional PCR Real-Time PCR Vs. Traditional PCR Description This tutorial will discuss the evolution of traditional PCR methods towards the use of Real-Time chemistry and instrumentation for accurate quantitation. Objectives

More information

Genomics Services @ GENterprise

Genomics Services @ GENterprise Genomics Services @ GENterprise since 1998 Mainz University spin-off privately financed 6-10 employees since 2006 Genomics Services @ GENterprise Sequencing Service (Sanger/3730, 454) Genome Projects (Bacteria,

More information

Genomic DNA Extraction Kit INSTRUCTION MANUAL

Genomic DNA Extraction Kit INSTRUCTION MANUAL Genomic DNA Extraction Kit INSTRUCTION MANUAL Table of Contents Introduction 3 Kit Components 3 Storage Conditions 4 Recommended Equipment and Reagents 4 Introduction to the Protocol 4 General Overview

More information

PicoMaxx High Fidelity PCR System

PicoMaxx High Fidelity PCR System PicoMaxx High Fidelity PCR System Instruction Manual Catalog #600420 (100 U), #600422 (500 U), and #600424 (1000 U) Revision C Research Use Only. Not for Use in Diagnostic Procedures. 600420-12 LIMITED

More information

Thermo Scientific DyNAmo cdna Synthesis Kit for qrt-pcr Technical Manual

Thermo Scientific DyNAmo cdna Synthesis Kit for qrt-pcr Technical Manual Thermo Scientific DyNAmo cdna Synthesis Kit for qrt-pcr Technical Manual F- 470S 20 cdna synthesis reactions (20 µl each) F- 470L 100 cdna synthesis reactions (20 µl each) Table of contents 1. Description...

More information

LightCycler 480 Real-Time PCR System. High Resolution Melting: Optimization Strategies. Technical Note No. 1

LightCycler 480 Real-Time PCR System. High Resolution Melting: Optimization Strategies. Technical Note No. 1 LightCycler 480 Real-Time PCR System Technical Note No. 1 High Resolution Melting: Optimization Strategies High resolution melting (HRM) is a novel, closed-tube, post-pcr technique allowing genomic researchers

More information

Crime Scenes and Genes

Crime Scenes and Genes Glossary Agarose Biotechnology Cell Chromosome DNA (deoxyribonucleic acid) Electrophoresis Gene Micro-pipette Mutation Nucleotide Nucleus PCR (Polymerase chain reaction) Primer STR (short tandem repeats)

More information

Acidity in Wine: The importance of management through measurement

Acidity in Wine: The importance of management through measurement Acidity in Wine: The importance of management through measurement The typical acidity measurements in grape juice and wine are ph and titratable acidity (TA). The ph measurement is used in the vineyard

More information

Lyme Disease. genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere... RecA gene. 150 tests. Primerdesign Ltd.

Lyme Disease. genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere... RecA gene. 150 tests. Primerdesign Ltd. TM Primerdesign Ltd TM Primerdesign Ltd Lyme Disease RecA gene genesig Standard Kit 150 tests DNA testing Everything... Everyone... Everywhere... For general laboratory and research use only 1 Introduction

More information

2. True or False? The sequence of nucleotides in the human genome is 90.9% identical from one person to the next. False (it s 99.

2. True or False? The sequence of nucleotides in the human genome is 90.9% identical from one person to the next. False (it s 99. 1. True or False? A typical chromosome can contain several hundred to several thousand genes, arranged in linear order along the DNA molecule present in the chromosome. True 2. True or False? The sequence

More information

Gene Expression Assays

Gene Expression Assays APPLICATION NOTE TaqMan Gene Expression Assays A mpl i fic ationef ficienc yof TaqMan Gene Expression Assays Assays tested extensively for qpcr efficiency Key factors that affect efficiency Efficiency

More information

Genetic relationships among local Vitis vinifera cultivars from Campania (Italy)

Genetic relationships among local Vitis vinifera cultivars from Campania (Italy) Vitis 44 (1), 25 34 (2005) Genetic relationships among local Vitis vinifera cultivars from Campania (Italy) L. COSTANTINI 1), A. MONACO 2), J. F. VOUILLAMOZ 1), M. FORLANI 2) and M. S. GRANDO 1) 1) Istituto

More information

Intended Use: The kit is designed to detect the 5 different mutations found in Asian population using seven different primers.

Intended Use: The kit is designed to detect the 5 different mutations found in Asian population using seven different primers. Unzipping Genes MBPCR014 Beta-Thalassemia Detection Kit P r o d u c t I n f o r m a t i o n Description: Thalassemia is a group of genetic disorders characterized by quantitative defects in globin chain

More information

MOLECULAR MARKERS AND THEIR APPLICATIONS IN CEREALS BREEDING

MOLECULAR MARKERS AND THEIR APPLICATIONS IN CEREALS BREEDING MOLECULAR MARKERS AND THEIR APPLICATIONS IN CEREALS BREEDING Viktor Korzun Lochow-Petkus GmbH, Grimsehlstr.24, 37574 Einbeck, Germany korzun@lochow-petkus.de Summary The development of molecular techniques

More information

Genetic Technology. Name: Class: Date: Multiple Choice Identify the choice that best completes the statement or answers the question.

Genetic Technology. Name: Class: Date: Multiple Choice Identify the choice that best completes the statement or answers the question. Name: Class: Date: Genetic Technology Multiple Choice Identify the choice that best completes the statement or answers the question. 1. An application of using DNA technology to help environmental scientists

More information

Real-time PCR: Understanding C t

Real-time PCR: Understanding C t APPLICATION NOTE Real-Time PCR Real-time PCR: Understanding C t Real-time PCR, also called quantitative PCR or qpcr, can provide a simple and elegant method for determining the amount of a target sequence

More information

Path-ID Multiplex One-Step RT-PCR Kit

Path-ID Multiplex One-Step RT-PCR Kit USER GUIDE Path-ID Multiplex One-Step RT-PCR Kit TaqMan probe-based multiplex one-step real-time RT-PCR detection of RNA targets Catalog Numbers 4428206, 4428207, 4440022 Publication Part Number 4440907

More information

DNA FRAGMENT ANALYSIS by Capillary Electrophoresis

DNA FRAGMENT ANALYSIS by Capillary Electrophoresis DNA FRAGMENT ANALYSIS by Capillary Electrophoresis USER GUIDE DNA Fragment Analysis by Capillary Electrophoresis Publication Number 4474504 Rev. A Revision Date September 2012 For Research Use Only. Not

More information

Real-time quantitative RT -PCR (Taqman)

Real-time quantitative RT -PCR (Taqman) Real-time quantitative RT -PCR (Taqman) Author: SC, Patti Lab, 3/03 This is performed as a 2-step reaction: 1. cdna synthesis from DNase 1-treated total RNA 2. PCR 1. cdna synthesis (Advantage RT-for-PCR

More information

Data Analysis for Ion Torrent Sequencing

Data Analysis for Ion Torrent Sequencing IFU022 v140202 Research Use Only Instructions For Use Part III Data Analysis for Ion Torrent Sequencing MANUFACTURER: Multiplicom N.V. Galileilaan 18 2845 Niel Belgium Revision date: August 21, 2014 Page

More information

VLLM0421c Medical Microbiology I, practical sessions. Protocol to topic J10

VLLM0421c Medical Microbiology I, practical sessions. Protocol to topic J10 Topic J10+11: Molecular-biological methods + Clinical virology I (hepatitis A, B & C, HIV) To study: PCR, ELISA, your own notes from serology reactions Task J10/1: DNA isolation of the etiological agent

More information

Technical Manual No. 0173 Update Date 10112010

Technical Manual No. 0173 Update Date 10112010 TissueDirect TM Multiplex PCR System Technical Manual No. 0173 Update Date 10112010 I Description.. 1 II Applications 2 III Key Features.. 2 IV Shipping and Storage. 3 V Simplified Procedures. 3 VI Detailed

More information

DNA MARKERS FOR ASEASONALITY AND MILK PRODUCTION IN SHEEP. R. G. Mateescu and M.L. Thonney

DNA MARKERS FOR ASEASONALITY AND MILK PRODUCTION IN SHEEP. R. G. Mateescu and M.L. Thonney DNA MARKERS FOR ASEASONALITY AND MILK PRODUCTION IN SHEEP Introduction R. G. Mateescu and M.L. Thonney Department of Animal Science Cornell University Ithaca, New York Knowledge about genetic markers linked

More information

A Quick Start Guide to Establishing a Vineyard in Oregon Patty Skinkis, Ph.D.

A Quick Start Guide to Establishing a Vineyard in Oregon Patty Skinkis, Ph.D. A Quick Start Guide to Establishing a Vineyard in Oregon Patty Skinkis, Ph.D. When thinking of starting a vineyard, many questions come to mind: Would my land be suitable for growing grapes? What types

More information

Hepatitis B Virus Genemer Mix

Hepatitis B Virus Genemer Mix Product Manual Hepatitis B Virus Genemer Mix Primer Pair for amplification of HBV Specific DNA Fragment Includes Internal Negative Control Primers and Template Catalog No.: 60-2007-12 Store at 20 o C For

More information

Dengue Virus subtypes 1,2 3 and 4. genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere... 3 Untranslated Region (3 UTR) 150 tests

Dengue Virus subtypes 1,2 3 and 4. genesig Standard Kit. DNA testing. Everything... Everyone... Everywhere... 3 Untranslated Region (3 UTR) 150 tests TM Primerdesign Ltd TM Primerdesign Ltd Dengue Virus subtypes 1,2 3 and 4 3 Untranslated Region (3 UTR) genesig Standard Kit 150 tests DNA testing Everything... Everyone... Everywhere... For general laboratory

More information

Aurora Forensic Sample Clean-up Protocol

Aurora Forensic Sample Clean-up Protocol Aurora Forensic Sample Clean-up Protocol 106-0008-BA-D 2015 Boreal Genomics, Inc. All rights reserved. All trademarks are property of their owners. http://www.borealgenomics.com support@borealgenomics.com

More information

ID kit. imegen Anchovies II. and E. japonicus) DNA detection by. User manual. Anchovies species (E. encrasicolus. sequencing.

ID kit. imegen Anchovies II. and E. japonicus) DNA detection by. User manual. Anchovies species (E. encrasicolus. sequencing. User manual imegen Anchovies II ID kit Anchovies species (E. encrasicolus and E. japonicus) DNA detection by sequencing Reference: Made in Spain The information in this guide is subject to change without

More information

Corvinus University of Budapest. Comparison of several vineyard floor management methods in. Tokaj-Hegyalja. Thesis of PhD dissertation.

Corvinus University of Budapest. Comparison of several vineyard floor management methods in. Tokaj-Hegyalja. Thesis of PhD dissertation. Corvinus University of Budapest Comparison of several vineyard floor management methods in Tokaj-Hegyalja Thesis of PhD dissertation Göblyös Judit 2013 PhD School Name: Doctoral School of Horticultural

More information

CompleteⅡ 1st strand cdna Synthesis Kit

CompleteⅡ 1st strand cdna Synthesis Kit Instruction Manual CompleteⅡ 1st strand cdna Synthesis Kit Catalog # GM30401, GM30402 Green Mountain Biosystems. LLC Web: www.greenmountainbio.com Tel: 800-942-1160 Sales: Sales@ greenmountainbio.com Support:

More information

Genetics Module B, Anchor 3

Genetics Module B, Anchor 3 Genetics Module B, Anchor 3 Key Concepts: - An individual s characteristics are determines by factors that are passed from one parental generation to the next. - During gamete formation, the alleles for

More information

Genetic Analysis. Phenotype analysis: biological-biochemical analysis. Genotype analysis: molecular and physical analysis

Genetic Analysis. Phenotype analysis: biological-biochemical analysis. Genotype analysis: molecular and physical analysis Genetic Analysis Phenotype analysis: biological-biochemical analysis Behaviour under specific environmental conditions Behaviour of specific genetic configurations Behaviour of progeny in crosses - Genotype

More information

INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE Q5B

INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE Q5B INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE ICH HARMONISED TRIPARTITE GUIDELINE QUALITY OF BIOTECHNOLOGICAL PRODUCTS: ANALYSIS

More information

Introduction to transcriptome analysis using High Throughput Sequencing technologies (HTS)

Introduction to transcriptome analysis using High Throughput Sequencing technologies (HTS) Introduction to transcriptome analysis using High Throughput Sequencing technologies (HTS) A typical RNA Seq experiment Library construction Protocol variations Fragmentation methods RNA: nebulization,

More information

Computer Automation of STR Scoring for Forensic Databases

Computer Automation of STR Scoring for Forensic Databases Computer Automation of STR Scoring for Forensic Databases Mark W. Perlin * Cybergenetics, Pittsburgh, PA Abstract Forensic databases are becoming an increasingly valuable law enforcement tool for convicting

More information

Real time and Quantitative (RTAQ) PCR. so I have an outlier and I want to see if it really is changed

Real time and Quantitative (RTAQ) PCR. so I have an outlier and I want to see if it really is changed Real time and Quantitative (RTAQ) PCR or.. for this audience so I have an outlier and I want to see if it really is changed Nigel Walker, Ph.D. Laboratory of Computational Biology and Risk Analysis, Environmental

More information

Molecular and Cell Biology Laboratory (BIOL-UA 223) Instructor: Ignatius Tan Phone: 212-998-8295 Office: 764 Brown Email: ignatius.tan@nyu.

Molecular and Cell Biology Laboratory (BIOL-UA 223) Instructor: Ignatius Tan Phone: 212-998-8295 Office: 764 Brown Email: ignatius.tan@nyu. Molecular and Cell Biology Laboratory (BIOL-UA 223) Instructor: Ignatius Tan Phone: 212-998-8295 Office: 764 Brown Email: ignatius.tan@nyu.edu Course Hours: Section 1: Mon: 12:30-3:15 Section 2: Wed: 12:30-3:15

More information

How To Breed Hondurasian Grapevine Varieties

How To Breed Hondurasian Grapevine Varieties Grape breeding in Hungary: old and new varieties (What Hungary added to the world of viticulture) Perhaps it has happened not by chance that in the fields of rootstock breeding, clonal selection, table

More information

Genetic conservation of microsatellite sequences in Suidae* *

Genetic conservation of microsatellite sequences in Suidae* * Ann. Anim. Sci., Vol. 9, No. 3 (2009) 243 248 Genetic conservation of microsatellite sequences in Suidae* * A n n a K o z u b s k a - S o b o c i ń s k a 1, B a r b a r a R e j d u c h 1, M a r i a O c

More information

Cloning GFP into Mammalian cells

Cloning GFP into Mammalian cells Protocol for Cloning GFP into Mammalian cells Studiepraktik 2013 Molecular Biology and Molecular Medicine Aarhus University Produced by the instructors: Tobias Holm Bønnelykke, Rikke Mouridsen, Steffan

More information

Molecular Biology Techniques: A Classroom Laboratory Manual THIRD EDITION

Molecular Biology Techniques: A Classroom Laboratory Manual THIRD EDITION Molecular Biology Techniques: A Classroom Laboratory Manual THIRD EDITION Susan Carson Heather B. Miller D.Scott Witherow ELSEVIER AMSTERDAM BOSTON HEIDELBERG LONDON NEW YORK OXFORD PARIS SAN DIEGO SAN

More information

Development of two Novel DNA Analysis methods to Improve Workflow Efficiency for Challenging Forensic Samples

Development of two Novel DNA Analysis methods to Improve Workflow Efficiency for Challenging Forensic Samples Development of two Novel DNA Analysis methods to Improve Workflow Efficiency for Challenging Forensic Samples Sudhir K. Sinha, Ph.D.*, Anne H. Montgomery, M.S., Gina Pineda, M.S., and Hiromi Brown, Ph.D.

More information