Independencia Universidad de Chile, Fac. Medicina
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1 Mauricio CERDA VILLABLANCA Independencia 1027 Santiago-Chile +56 (9) mcerda 31 years old Married Chilean 1 Education, Fac. Medicina Postdoc FONDECYT Oct Present Subject: Structural and dynamical priors for the characterization of tubular networks in cell biology. Sponsored by Prof. Steffen Härtel, SCIAN-Lab., Fac. Medicina Postdoc BNI Oct Oct Subject: Dynamics and transport processes in tubular cellular structures. Sponsored by Prof. Steffen Härtel, SCIAN-Lab. INRIA/Loria - Université Nancy 2 PhD Thesis in Computer Science Sep Oct Thesis: Distributed neural computation for the visual perception of motion. Defended on October Supervised by Prof. Bernard Girau. Engineering degree in Computer Science March Jan Thesis subject: Reconocimiento de bordes, un enfoque aplicado. Maximum distinction (6.4/7.0). Supervised by Prof. Nancy Hitschfeld-Kahler. B.Sc. in Engineering Sciences, Computer Science March July Publications 2.1 International Journals 1. Jara J, Cerda M, Delpiano J, Härtel S: Combined Local Global Optical Flow. Image Processing On Line, in review (2014), Scirus. 2. Liddle P, Lafon-Hughes L, Di Tomaso MV, Reyes-Ábalos AL, Jara J, Cerda M, Härtel S, Folle G: Bleomycininduced yh2ax foci map preferentially to replicating domains in CHO9 interphase nuclei. Chromosome Research (Springer), Accepted (2014), ISI. 3. Castañeda V, Cerda M, Santibañez F, Jara J, Pulgar E, Palma K, Lemus CG, Concha M, Härtel S: Computational Methods for Analysis of Dynamic Events In Cell Migration. Current Molecular Medicine (Bentham), 14(2): (2014), ISI. 4. Cerda M and Girau B.: Asymmetry in neural fields: a spatiotemporal encoding mechanism. Biol. Cybern. (Springer), 107(2): (2013), ISI. 5. Terissi L, Cerda M, Gomez JC, Hitschfeld-Kahler N, Girau B: A Comprehensive System for Facial Animation of Generic 3D Head Models driven by Speech. EURASIP Journal on Audio, Speech and Music Processing (Springer), doi: / (2013), ISI.
2 2.2 International Peer-review Conferences 1. Terissi L, Cerda M, Gómez JC, Hitschfeld-Kahler N, Girau B and Valenzuela R: Animation of generic 3D head models driven by speech. Multimedia and Expo (ICME), IEEE International Conference on, pp. 1 6, 2011, Barcelona, Spain (top 15%). Oral 2. Cerda M, Valenzuela R and Hitschfeld-Kahler N: Generic face animation. In: XXIX International Conference of the Chilean Computer Society, SCCC IEEE Computer Society, pp Antofagasta, Chile. Oral 3. Cerda M and Girau B: A bio-inspired neural model to discriminate visual sequences. In: Brain Inspired Cognitive Systems, BICS Madrid, Spain. Oral 4. Cerda M, Terissi L, Girau B: Bio-inspired speed detection and discrimination. In: 4th International Conference on Bio-Inspired Models of Network, Information, and Computer Systems, Bionetics LNICST, vol. 39, pp Springer, Heidelberg (2010). Avignon, France. Oral 5. Barrón-Zambrano JH, Torres-Huitzil C, Cerda M: Flexible Architecture for Three Classes of Optical Flow Extraction Algorithms: In: Reconfig 2008, International Conference on Reconfigurable Computing and FPGAs. IEEE Computer Society, pp Cancun, Mexico. Oral 6. Cerda M and Girau B: A neural model with feedback for robust disambiguation of motion. In: European Symp. on Artificial Neural Networks, ESANN ESANN, pp Bruges, Belgium. Poster 7. Cerda M, Hitschfeld-Kahler N, Mery D.: Robust tree-ring detection. In: Pacific-Rim Symposium on Image and Video Technology, PSIVT LNCS, vol. 4872, pp Springer (2007).. Oral 2.3 Other Conferences/Research Reports 1. Cerda M, Toledo J, Cárdenas A, Romero P, Kong M, Couve A, Leyton L, Härtel S. Geometrical constraints improve actin and microtubules quantification in cell culture systems. Visualisation and manipulation of signals and forces in developing tissues, International Symposium on, Poster Presentation. 2. Cordova A, Ramírez O, Cerda M, Couve A, Hidalgo C, Härtel S. Calcium Waves in Hippocampal Neurons and Their Modulation by Endoplasmic Reticulum Organization. XXVII Reunión Anual de la Sociedad de Biología Celular de Chile, Puerto Varas, Chile. Oral Presentation. 3. Juricic MA, Cerda M, Cánovas JA, Kukuljan M, Härtel S, Couve A. Characterization of the ER-to-Golgi intermediate compartment(ergic) in hippocampal neurons. XXVII Reunión Anual de la Sociedad de Biología Celular de Chile, Puerto Varas, Chile. Poster 4. Härtel S, Cerda M, Jara J, Castañeda V. Quality, Quantity, Reproducibility: Biomedical Imaging at the Interface of Research and Development Photons, Borders, Flows. Third CMM Pucón Symposium, Pucon, Chile. Oral 5. Rojas-Moraleda R, Pezoa R, Xiong W, Valous N, Diaz E, Cerda M, Garcia A, Salinas L, Grabe N, and Härtel S. Topological Invariants for Segmentation of Nuclei and Membranes in Breast Cancer Analysis. 3rd European Conference on Whole Slide Imaging and Analysis, University of Heidelberg, Germany. Poster 6. Castillo C, Liempi A, Droguett D, Duaso J, Cerda M, Härtel S, Galanti N, Maya JD, Kemmerling, U. Trypanosoma cruzi induces differentiation of the trophoblast. IFPA Meeting Whistler, Canada. Poster 7. Droguett D, Liempi A, Castillo C, Duaso J, Cerda M, Härtel S, Galanti N, Maya JD, Kemmerling, U. Trypanosoma cruzi induces cellular proliferation in the trophoblastic cell line bewo. IFPA Meeting Whistler, Canada. Poster
3 8. Liempi A, Castillo C, Duaso J, Droguett J, Galanti N, Härtel S, Cerda M, Kemmerling U. Determinación de parásitos intracelulares de Trypanosoma cruzi mediante el uso del software Matlab. XV Jornadas Anuales de Parasitología, July 24-26, Santiago, 2013,. Poster Presentation. 9. Villarroel S, Cerda M, Santibañez F, Ramírez O, Palma K, Concha M, Hitschfeld-Kahler N, Härtel S.: Defining metrics to compare skeleton methods applied to biological structures. XXVI Annual Meeting of the Sociedad de Biología Celular de Chile, Pto. Varas, Chile. Poster 10. Cerda M, Jara J, CórdovaA, Toledo J, Pulgar E, Lemus CG, Ramírez O, Ralli J, Concha M, Härtel S: Optical Flow For Motion Estimation And Tracking Of Subcellular, Cellular And Supracellular Dynamics. XXVI Annual Meeting of the Sociedad de Biología Celular de Chile, Pto. Varas, Chile. Poster 11. Ramírez OA, Cerda M, Toledo J, Couve A, Härtel S. Endoplasmic reticulum organization and calcium signals in hippocampal neurons. In: 10th Gordon Conference on Cell Biology of the Neuron, Waterville, USA. Poster 12. Cerda M and Girau B: Motion Decomposition for biological and non-biological movements. Perception, vol. 40, pp ECVP Abstract Supplement, 2011, Toulouse, France. 13. Cerda M and Girau B: Spatiotemporal pattern coding using Neural Fields: Optimal parameter estimation. Research Report RR-7543, INRIA, February Cerda M and Girau B.: Visual pattern classification by neural fields. In: Troisième conférence française de Neurosciences Computationnelles, Neurocomp Neurocomp, pp. 8. Bordeaux, France. 3 Teaching Experience, Fac. Medicina Teaching, 23h International Course Optics, Forces & Development International Summer School Optics, Forces & Development MIM-M12.1, Proc. de Imágenes y Bioseñales I, Professor Steffen Härtel MIM-M12.2, Proc. de Imágenes y Bioseñales II, Professor Steffen Härtel. Instituto de investigaciones biológicas Clemente Estable Teaching, 1 week International Course The Microbial World Through Different Eyes. Montevideo, Uruguay Université Henri Poincaré Saint-Dié-des-Vosges, France Instructor (ATER), 96H Algorithmique, Algorithms introduction. Professor Benoit Naegel Réseaux, Computer networks. Mr. Frédéric Pin. Université Nancy 2 Teaching assistantships (TD/TP) 56H Programmation Web, Web Programming. Professor Gerome Canals Algorithmique, Algorithms introduction. Professor Laurent Dupont., FCFM Teaching assistantships 128h CC40A, Análisis de algoritmos, Algorithms Analysis. Professor Gonzalo Navarro FI10A, Introducción a la física, Introductory Physics. Professor Sergio Rica CC10A, Computación I, Computer Science I. Mr. Erich Reimberg.
4 4 Skills Languages: Spanish : native; English : fluent, French : fluent. Computer languages: C, C++, Matlab, Python, Java, Objective-C, PROLOG, Lisp, MPI/BSP (multicore/clusters) and Web related (PHP, Html, SQL). Familiar with: Linux (Ubuntu, RedHat), Apple (OS X), Windows (XP/Vista/7). Experienced user of VICON (3D Optical Capture) and OpenCV (C++ Computer Vision Library). 5 Work Experience, Facultad de Medicina FONDECYT Co-investigator Nov Oct FONDECYT Co-investigator Fast Computational Schemes for the Analysis of Morpho-Topological Data from High Throughput Microscopy, PI Prof. Steffen Härtel. FONDECYT Technical collaborator Partial Differential Eqs. For 3d Photon Denoising, Optical Flow And Adjacent Active Surface Models, PI Prof. Steffen Härtel. INRIA-Loria INRIA/CONICYT Internship Feb Jul Cooperation program between France and Chile to receive chilean students in research teams. Feedback interactions for the visual perception of motion using neural networks, under the supervision of Professor Bernard Girau in the Cortex team. Tastets Systems, LTDA. Project Engineer Dec Dec Management of the Project GPS-AVL, truck routing status using GPS/GPRS technologies. Part of the development team, mostly dedicated to software design and documentation., CMM. Developer Dec Jan Engineer trainee period at the Laboratorio de Bioinformática y Matemática del Genoma. Design and development of a Software application to segment 1D electrophoresis images. 6 Scholarships/Awards award, post-doctoral FONDECYT ranked first in its study group, Santiago - Chile, International Cartilage Repair Society best poster Award, ISCR 2013, Izmir - Turkey (collaborator). XI Jornadas Anuales de Parasitología best poster Award, SOCHIPA 2013, Santiago - Chile (Trabajo Libre). Post-Doctoral research scholarship by CONICYT (FONDECYT ), Post-Doctoral research scholarship by the Biomedical Neuroscience Institute (BNI), Technicolor best student paper award, ICME Doctoral research scholarship by the French Ministry of Education (EGIDE/INRIA), Outstanding student Award / Computer Science (top 6%) - University of Chile, Santiago - Chile
5 7 Research Projects Principal Investigator of FONDECYT post-doctoral project Structural and dynamical priors for the characterization of tubular networks in cell biology, , sponsored by Prof. Steffen Härtel, Medicine Faculty, U-Chile. Collaborator in the Latin American Cancer Research Network (USLACRN) project, Molecular Profiling of Stage II and III Breast Cancer in Latin America Women Receiving Standard-of-Care Treatment, , National Cancer Institute (NCI/NIH), National Coordinator: MD Bettina Müller. Co-Investigator in FONDECYT project Fast Computational Schemes for the Analysis of Morpho-Topological Data from High Throughput Microscopy, , Prof. Steffen Härtel, Medicine Faculty, U-Chile. Technical collaborator in FONDECYT project Partial Differential Equations For 3d Photon Denoising, Optical Flow And Adjacent Active Surface Models For High Throughput In Vivo Spinning Disk Microscopy, , Prof. Steffen Härtel, Medicine Faculty, U-Chile. Member of the research collaboration projet 09STIC06 (Stic-AmSud), BAVI: Bio-inspired Audio/Visual information Integration. A cooperation program between, INRIA(France) and the Universidad Nacional de Rosario (Argentina). jcgomez/bavi/. Technical collaborator in FONDECYT project Solid-Fluid Phase Coexistence In Vibrated Granular Monolayers, , Prof. Nicolas Mujica, Physics Department, U-Chile. References available upon request to: Bernard Girau Professor Université Henri Poincaré Départament informatique/inria bernard.girau@loria.fr Nancy Hitschfeld-Kahler Associated Professor Departamento de Ciencias de la Computación nancy@dcc.uchile.cl
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