OPEN SOURCE AND BOTTOM-UP VRE APPROACH IN WESTERN FRANCE
|
|
|
- Gilbert McKenzie
- 8 years ago
- Views:
Transcription
1 OPEN SOURCE AND BOTTOM-UP VRE APPROACH IN WESTERN FRANCE Towards supporting accessible, reproducible, and transparent research in the life sciences Yvan Le Bras Cyril Monjeaud Olivier Collin, the GenOuest team & others CNRS UMR 6074 IRISA-INRIA
2 CONTEXT Data, a lot of data, data analysis and communication
3 Datanami Now : Genomics : Next Generation Sequencing Now : Proteomics Next : Bio-imaging Kahn. On the future of genomic data. Science (2011) vol. 331 (6018) pp Digital data Huge amount Heterogenous Critical situation for laboratories
4 Datanami Now : Genomics : Next Generation Sequencing Now : Proteomics Next : Bio-imaging Kahn. On the future of genomic data. Science (2011) vol. 331 (6018) pp Digital data Huge amount Heterogenous Critical situation for laboratories
5 Datanami Now : Genomics : Next Generation Sequencing Now : Proteomics Next : Bio-imaging Kahn. On the future of genomic data. Science (2011) vol. 331 (6018) pp Digital data Huge amount Heterogenous Critical situation for laboratories
6 Loss of analysis skills people with the skills to analyse data are scarce & will become scarcer Ludwig Siegele Welcome to the yotta world The economist, 2012 Facilitate data analysis Skills transfer by Training Accessibility : More usable tools Reproducibility : Peer review / re-analysis / Portability Transparency : Public funding / citizens & society
7 Loss of communication «comprehensible to everyone» Exchange from one domain to another From ICT / IT to scientific domains Between scientific domains e-science
8 E-science Using Full ICT power in Research Infrastructure related
9 E-science Using Full ICT power in Research Infrastructure related But not only! Human resource Tools to use infrastructure
10 E-science Using Full ICT power in Research Infrastructure related But not only! Human resource Tools to use infrastructure From Top-down based on big infrastructure to bottom-up approach with almost no infrastructure: e-biogenouest project
11 E-BIOGENOUEST An innovative VRE: A system of open source systems
12 E-Biogenouest Started in May 2012 for 3 years Funded by Brittany and Pays de la Loire E-science initiative for the Biogenouest network Test an e-science approach Roadmap preparation
13 E-Biogenouest Started in May 2012 for 3 years Funded by Brittany and Pays de la Loire E-science initiative for the Biogenouest network Test an e-science approach More than 150 scientists trained! 1669 meetings ;) Roadmap preparation -UEB C@mpus -CPER -FRM -INCa -H2020 Health Agro Environment 7 articles IT More than 200 users! An innovative VRE concept -Mission interdisciplinarité CNRS -PIA -IFB -Fce Génomique -Rapsodyn -Sciences citoyennes
14 VIRTUAL RESEARCH ENVIRONMENT A system of systems approach based on -Research Lifecycle -Open source solutions
15 VRE: a tool for e-science application Virtual Research Environment Data User Web portal Collaboration softwares Community Processing resources
16 An innovative VRE approach Research Lifecycle Open source solutions Don t reinvente the wheel
17 An innovative VRE approach Research Lifecycle Open source solutions Don t reinvente the wheel
18 An innovative VRE approach Stay here! Research Lifecycle Open source solutions Don t reinvente the wheel
19 Continuum HubZero Galaxy EMME Community Continuum data management & analysis Collaborative environment Collaboration
20 IFB (French Institut of Bioinformatics) & VRE new VRE national working group H2020 Excelerate project facilitate the integration of Europe s bioinformatics resources
21 DATA MANAGEMENT Experimental Metadata Management Environment
22 ISAtools : Experimental data management EMME ISAtools suite to store data & metadata Fonctionalities -based on biomed ontologies -bridge between existing biomed standards -format publication submission -Pydio to upload data -biological investigation repository (data + metadata) Oxford eresearch Centre P. Rocca-Serra et al. Bioinformatics, 26;254(6), 2010
23 ISAtools : Experimental data management EMME ISAtools suite to store data & metadata Fonctionalities -based on biomed ontologies -bridge between existing biomed standards -format publication submission -Pydio to upload data -biological investigation repository (data + metadata) Oxford eresearch Centre P. Rocca-Serra et al. Bioinformatics, 26;254(6), 2010
24 Pydio : File sharing platform Pydio by GenOuest To store & share data as links Informations -Galaxy workspace -EMME workspace Share - data via URI - control - safety - privacy Abstrium SAS Charles du jeu, David Gillard et al.
25 DATA ANALYSIS Analyze, share and visualize data, create workflows through the web
26 What users want DATA ANALYSIS Analyze, share and visualize data, create workflows through the web
27 What users want DATA ANALYSIS Analyze, share and visualize data, create workflows through the web
28 What users have DATA ANALYSIS Analyze, share and visualize data, create workflows through the web
29 Galaxy : Data analysis web platform GALAXY by GenOuest To analyse & share data as processes and tools Informations jobs 152 users More than 800 tools Share - data - histories - workflows - tools Penn state university J. Goecks, A. Nekrutenko, J. Taylor, et al. Genome Biol, 25;11(8):R86, 2010
30 Galaxy : Data analysis web platform GALAXY by GenOuest To analyse & share data as processes and tools Informations jobs 152 users More than 800 tools Share - data - histories - workflows - tools Penn state university J. Goecks, A. Nekrutenko, J. Taylor, et al. Genome Biol, 25;11(8):R86, 2010
31 Galaxy : GUGGO Working group Galaxy User Group Grand Ouest 5 western France computing centers - Plouzané : Ifremer CAPArmor - Roscoff : IFB-GO ABiMS - Rennes : IFB-GO GenOuest + INRA BIPAA - Nantes : IFB-GO BIRD - Angers : Bioinformatics IRHS team Actions - meetings (tools dev / admin / users) - A dedicated Tool Shed - Training (Galaxy Training Network) - A group on ebgo HUB
32 Giving the key Genocloud Do what you want
33 HUBZERO Collaboration platform dedicated to scientifics collaboration
34 HUBzero : Scientifique collaborative platform ebgo HUB HUBzero to share knowledge and manage groups and projects Informations 218 users 127 projects 57 groups 796 resources > 400 unique users by month Purdue University M. McLennan, R. Kennell. Comput Sci Eng, 12:48-53, 2010.
35 HUBzero : Scientifique collaborative platform VRE in production : Welcome to CeSGO HUB!
36 What are our goals? For society Open Science and open data For end users scientists communities Data management plan Preserve, access, share & visualise (data & analytics processes) Help for project management For ICT Facilitate the use of tools Research Service Accelerate switch between dev to production state Optimise infrastructures use (storage, computing & network ) Infrastructure for data infastructure of data
37 What are our goals? For society Open Science and open data For end users scientists communities Data management plan Preserve, access, share & visualise (data & analytics processes) Help for project management For ICT Facilitate the use of tools Research Service Accelerate switch between dev to production state Optimise infrastructures use (storage, computing & network ) Infrastructure for data infastructure of data
38 From Biologist to Biologist! Not ITist Don t cross lines you don t want to cross Keep your time to do science, not remember how you can copy a directory
39 VRE AS A STARTING BLOCK Horizon & Challenge
40 CeSGO : Western France e-science metadata Data management URI Life sciences protocols
41 CeSGO : Western France e-science cloud Reproducibility Galaxy versioning docker
42 CeSGO : Western France e-science wiki Accessibility Analytics processes Public resources Experiments Publications
43 CeSGO : Western France e-science New VREs! Connected using semantic web approaches Thanks to DOI attribution Linked Data
44 CeSGO : Western France e-science New methods to make science! Scitizen A web platform + a smartphone app Create your dedicated citizen science project web page MMOS A new method for citizen science A first Biogenouest call in december 2014
45 A JOINT VENTURE
46 Thanks Galaxy team Thanks ISA team
47 Thanks HUBzero team Michael McLennan Betsy Hillery Nicholas J Kisseberth Shawn Rice Nikki Huang Claire Stirm Shirley Skeel Shirley Skeel
48 Thanks for your attention GenOuest Bio-informatics core facility Symbiose group IRISA/INRIA GenOuest-Dyliss-Genscale ebgo HUB (collaboration) Scitizen portal (citizen science) EMME portal (data management) Galaxy instance (data analysis) GO4Bioinformatics (education )
49 Thanks for your attention GenOuest Bio-informatics core facility Symbiose group IRISA/INRIA GenOuest-Dyliss-Genscale ebgo HUB (collaboration) Scitizen portal (citizen science) EMME portal (data management) Galaxy instance (data analysis) GO4Bioinformatics (education )
E-SCIENCE IN WESTERN FRANCE :
E-SCIENCE IN WESTERN FRANCE : BEGINS Yvan Le Bras Cyril Monjeaud Olivier Collin & the GenOuest team CNRS UMR 6074 IRISA-INRIA Context Now : Genomics : Next Generation Sequencing Now : Proteomics Next :
E-SCIENCE IN WESTERN FRANCE : THE BEGINNING
E-SCIENCE IN WESTERN FRANCE : THE BEGINNING Yvan Le Bras Olivier Collin Jacques Nicolas CNRS UMR 6074 IRISA-INRIA Context Now : Genomics : Next Generation Sequencing Now : Proteomics Next : Bio-imaging
DATA MANAGEMENT PLAN IN THE REAL LIFE SCIENCES
DATA MANAGEMENT PLAN IN THE REAL LIFE SCIENCES Yvan Le Bras Cyril Monjeaud Olivier Collin Jacques Nicolas CNRS UMR 6074 IRISA-INRIA Context Now : Genomics : Next Generation Sequencing Now : Proteomics
DU PROJET E-BIOGENOUEST À CESGO, PREMIER CENTRE E-SCIENCE EN FRANCE : MISE EN PLACE D UNE INFRASTRUCTURE DE DONNÉES OUVERTE
DU PROJET E-BIOGENOUEST À CESGO, PREMIER CENTRE E-SCIENCE EN FRANCE : MISE EN PLACE D UNE INFRASTRUCTURE DE DONNÉES OUVERTE Yvan Le Bras Cyril Monjeaud Olivier Collin & the GenOuest team CNRS UMR 6074
e-biogenouest : The Tools
e-biogenouest : The Tools Coordinateur : Olivier Collin Animateur : Yvan Le Bras CNRS UMR 6074 IRISA-INRIA / Plateforme de Bioinformatique GenOuest yvan.le_bras@irisa.fr Programme fédérateur Biogenouest
A curated Domain centric shared Docker registry linked to the Galaxy toolshed
A curated Domain centric shared Docker registry linked to the Galaxy toolshed François Moreews 1, Olivier Sallou 2, Yvan le Bras 2, Marie Grosjean 3, Cyril Monjeaud 2, Thomas Darde 4, Olivier Collin 2,
Workprogramme 2014-15
Workprogramme 2014-15 e-infrastructures DCH-RP final conference 22 September 2014 Wim Jansen einfrastructure DG CONNECT European Commission DEVELOPMENT AND DEPLOYMENT OF E-INFRASTRUCTURES AND SERVICES
The National Cancer Informatics Program (NCIP) Hub
The National Cancer Informatics Program (NCIP) Hub A platform for collaboration and sharing of data, tools, and standards amongst the cancer research community Ishwar Chandramouliswaran September 29 2014
Research Data Alliance: Current Activities and Expected Impact. SGBD Workshop, May 2014 Herman Stehouwer
Research Data Alliance: Current Activities and Expected Impact SGBD Workshop, May 2014 Herman Stehouwer The Vision 2 Researchers and innovators openly share data across technologies, disciplines, and countries
COPO: Collaborative Open Plant Omics. Rob Davey Data Infrastructure and Algorithms Group Leader robert.davey@tgac.ac.
: Collaborative Open Plant Omics Rob Davey Data Infrastructure and Algorithms Group Leader robert.davey@tgac.ac.uk @froggleston Toni Etuk Felix Shaw Acknowledgements Oxford eresearch Centre Susanna Sansone
Using the Grid for the interactive workflow management in biomedicine. Andrea Schenone BIOLAB DIST University of Genova
Using the Grid for the interactive workflow management in biomedicine Andrea Schenone BIOLAB DIST University of Genova overview background requirements solution case study results background A multilevel
Cloud Ready for Bioinformatics?
IDB acknowledges co-funding by the European Community's Seventh Framework Programme (INFSO-RI-261552) and the French National Research Agency's Arpege Programme (ANR-10-SEGI-001) Cloud Ready for Bioinformatics?
THE EFFECTS OF BIG DATA ON INFRASTRUCTURE. Sakkie Janse van Rensburg Dr Dale Peters UCT 1
THE EFFECTS OF BIG DATA ON INFRASTRUCTURE Sakkie Janse van Rensburg Dr Dale Peters UCT 1 BIG DATA DEFINED Gartner in 2001 first coined the phrase Big Data Volume Velocity Big data is a popular term used
Deployment of BioXSDenabled services on a Cloud. christophe.blanchet@ibcp.fr
Deployment of BioXSDenabled services on a Cloud Outline IBCP, provider of BioXSD-enabled services Cloud Computing RENABI GRISBI, French infrastructure Bioinformatics Integrated s gbio-pbil.ibcp.fr/ws GBIO
Data Intensive Research Initiative for South Africa (DIRISA)
Data Intensive Research Initiative for South Africa (DIRISA) A Reinterpreted Vision A. Vahed 25 November 2014 Outline Background Data Landscape Strategy & Objectives Activities & Outputs Organisational
Quantum Leap in Open Source Collaboration
Quantum Leap in Open Source Collaboration Bridging the gap between campus infrastructures Ton van Alebeek Harold Teunissen et al. April 2012 - #I2SMM12 Cyberinfra in the Netherlands All ICT activities
The open source ISA sooware suite and its internaqonal user community:
The open source ISA sooware suite and its internaqonal user community: Knowledge management of experimental data Alejandra González- Beltrán Senior Software Engineer, ISATeam Oxford e- Research Centre,
Case Study Life Sciences Data
Case Study Life Sciences Data Centre for Integrative Systems Biology and Bioinformatics www.imperial.ac.uk/bioinfsupport Sarah Butcher s.butcher@imperial.ac.uk www.imperial.ac.uk/bioinfsupport Bio-data
Science Gateways in the US. Nancy Wilkins-Diehr wilkinsn@sdsc.edu
Science Gateways in the US Nancy Wilkins-Diehr wilkinsn@sdsc.edu NSF vision for cyberinfrastructure in the 21st century Software is critical to today s scientific advances Science is all about connections
AgroPortal. a proposition for ontologybased services in the agronomic domain
AgroPortal a proposition for ontologybased services in the agronomic domain Clément Jonquet, Esther Dzalé-Yeumo, Elizabeth Arnaud, Pierre Larmande Why ontologies? Why an ontology repository? 2 Biologist
Service Road Map for ANDS Core Infrastructure and Applications Programs
Service Road Map for ANDS Core and Applications Programs Version 1.0 public exposure draft 31-March 2010 Document Target Audience This is a high level reference guide designed to communicate to ANDS external
URGI and ELIXIR France for plants and food
URGI and ELIXIR France for plants and food Elixir - SME & Innovation event, Data Driven Innovation. 19 th march 2015 A L I M E N T A T I O N A G R I C U L T U R E E N V I R O N N E M E N T URGI: Unité
The ISPS Data Archive: Mission, Work, and Some Reflections
The ISPS Data Archive: Mission, Work, and Some Reflections http://isps.yale.edu Archive Embedded in ISPS Website Limor Peer Yale University April 2016 http://isps.yale.edu/research/data ISPS Data Archive:
Global Scientific Data Infrastructures: The Big Data Challenges. Capri, 12 13 May, 2011
Global Scientific Data Infrastructures: The Big Data Challenges Capri, 12 13 May, 2011 Data-Intensive Science Science is, currently, facing from a hundred to a thousand-fold increase in volumes of data
Standard Big Data Architecture and Infrastructure
Standard Big Data Architecture and Infrastructure Wo Chang Digital Data Advisor Information Technology Laboratory (ITL) National Institute of Standards and Technology (NIST) wchang@nist.gov May 20, 2016
Exploitation of ISS scientific data
Cooperative ISS Research data Conservation and Exploitation Exploitation of ISS scientific data Luigi Carotenuto Telespazio s.p.a. Copernicus Big Data Workshop March 13-14 2014 European Commission Brussels
Euro-BioImaging European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences
Euro-BioImaging European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences WP11 Data Storage and Analysis Task 11.1 Coordination Deliverable 11.2 Community Needs of
Human Brain Project -
Human Brain Project - Scientific goals, Organization, Our role Wissenswerte, Bremen 26. Nov 2013 Prof. Sonja Grün Insitute of Neuroscience and Medicine (INM-6) & Institute for Advanced Simulations (IAS-6)
In 2014, the Research Data group @ Purdue University
EDITOR S SUMMARY At the 2015 ASIS&T Research Data Access and Preservation (RDAP) Summit, panelists from Research Data @ Purdue University Libraries discussed the organizational structure intended to promote
ICSTI 2014 General Assembly October 18-19, 2014
ICSTI 2014 General Assembly October 18-19, 2014 TACC Workshop Sunday, October 19 th, 2014 Enhancing Discoverability and Accessibility of Scientific and Technical Research Information and Data The TACC
Hadoopizer : a cloud environment for bioinformatics data analysis
Hadoopizer : a cloud environment for bioinformatics data analysis Anthony Bretaudeau (1), Olivier Sallou (2), Olivier Collin (3) (1) anthony.bretaudeau@irisa.fr, INRIA/Irisa, Campus de Beaulieu, 35042,
EMBL Identity & Access Management
EMBL Identity & Access Management Rupert Lück EMBL Heidelberg e IRG Workshop Zürich Apr 24th 2008 Outline EMBL Overview Identity & Access Management for EMBL IT Requirements & Strategy Project Goal and
Virginia Commonwealth University Rice Rivers Center Data Management Plan
Virginia Commonwealth University Rice Rivers Center Data Management Plan Table of Contents Objectives... 2 VCU Rice Rivers Center Research Protocol... 2 VCU Rice Rivers Center Data Management Plan... 3
NIH Commons Overview, Framework & Pilots - Version 1. The NIH Commons
The NIH Commons Summary The Commons is a shared virtual space where scientists can work with the digital objects of biomedical research, i.e. it is a system that will allow investigators to find, manage,
HUBzero: A Web-based Platform for Research, Education, and Scientific Collaboration
HUBzero Platform for Scientific Collaboration HUBzero: A Web-based Platform for Research, Education, and Scientific Collaboration Michael McLennan, PhD Director, HUBzero Platform for Scientific Collaboration
Workspaces Concept and functional aspects
Mitglied der Helmholtz-Gemeinschaft Workspaces Concept and functional aspects A You-tube for science inspired by the High Level Expert Group Report on Scientific Data 21.09.2010 Morris Riedel, Peter Wittenburg,
IEEE International Conference on Computing, Analytics and Security Trends CAST-2016 (19 21 December, 2016) Call for Paper
IEEE International Conference on Computing, Analytics and Security Trends CAST-2016 (19 21 December, 2016) Call for Paper CAST-2015 provides an opportunity for researchers, academicians, scientists and
Information and Communications Technology Strategy 2014-2017
Contents 1 Background ICT in Geoscience Australia... 2 1.1 Introduction... 2 1.2 Purpose... 2 1.3 Geoscience Australia and the Role of ICT... 2 1.4 Stakeholders... 4 2 Strategic drivers, vision and principles...
Big Data and evolution of the Ground System EO ENG and the imarine case
Big Data and evolution of the Ground System EO ENG and the imarine case Andrea Manieri Engineering R&D Lab. Rome, 26/11/2013 1 1 AGENDA The Big data challenges seen from the space Engineering and (some)
Scientific Computing at NCEAS
Scientific Computing at NCEAS Jim Regetz & Rick Reeves National Center for Ecological Analysis & Synthesis Winter 2011 http://www.nceas.ucsb.edu Jim Regetz & Rick Reeves (NCEAS) Scientific Computing Overview
escidoc: una plataforma de nueva generación para la información y la comunicación científica
escidoc: una plataforma de nueva generación para la información y la comunicación científica Matthias Razum FIZ Karlsruhe VII Workshop REBIUN sobre proyectos digitales Madrid, October 18 th, 2007 18.10.2007
Scientific Data Infrastructure: activities in the Capacities Programme of FP7
Scientific Data Infrastructure: activities in the Capacities Programme of FP7 Presentation at the PARSE.Insight Workshop, Darmstadt, 21 September 2009 Carlos Morais Pires European Commission - DG INFSO
Digital libraries of the future and the role of libraries
Digital libraries of the future and the role of libraries Donatella Castelli ISTI-CNR, Pisa, Italy Abstract Purpose: To introduce the digital libraries of the future, their enabling technologies and their
Big Data in BioMedical Sciences. Steven Newhouse, Head of Technical Services, EMBL-EBI
Big Data in BioMedical Sciences Steven Newhouse, Head of Technical Services, EMBL-EBI Big Data for BioMedical Sciences EMBL-EBI: What we do and why? Challenges & Opportunities Infrastructure Requirements
EUDAT. Towards a pan-european Collaborative Data Infrastructure. Willem Elbers
EUDAT Towards a pan-european Collaborative Data Infrastructure Willem Elbers EUDAT / MPI-TLA Focus meeting: Data repositories SURF, Utrecht March 3, 2014 Outline EUDAT project EUDAT services Summary and
An Introduction to Genomics and SAS Scientific Discovery Solutions
An Introduction to Genomics and SAS Scientific Discovery Solutions Dr Karen M Miller Product Manager Bioinformatics SAS EMEA 16.06.03 Copyright 2003, SAS Institute Inc. All rights reserved. 1 Overview!
Open Access and Open Research Data in Horizon 2020
Open Access and Open Research Data in Horizon 2020 Celina Ramjoué Head of Sector Open Access to Scientific Publications and Data Digital Science Unit CONNECT.C3 22 November 2013 Train the Trainer for H2020
Interoperable Cloud Storage with the CDMI Standard
Interoperable Cloud Storage with the CDMI Standard Storage and Data Management in a post-filesystem World Mark Carlson, SNIA TC and Oracle Co-Chair, SNIA Cloud Storage TWG and Initiative Author: Mark Carlson,
SC News Issue 08. Contents. What's New? 29 September 2015. What's New? Research highlights Did you know Partner news Our people News & Events
SC News Issue 08 29 September 2015 Contents What's New? Research highlights Did you know Partner news Our people News & Events What's New? New Visual Analytics Capability in Scientific Computing The Scientific
How To Write An Ehr Blueprint
A Blueprint for Digital Health Beyond the EHR Presented by: Ron Parker Group Director Emerging Technologies Canada Health Infoway Inc. ehealth 2014 June 4, 2014 The EHRS Blueprint The EHR Solutions (EHRS)
SURFsara Data Services
SURFsara Data Services SUPPORTING DATA-INTENSIVE SCIENCES Mark van de Sanden The world of the many Many different users (well organised (international) user communities, research groups, universities,
Institut Français de Bioinformatique, Un Cloud pour les Sciences du Vivant
Institut Français de Bioinformatique, Un Cloud pour les Sciences du Vivant Christophe Blanchet! Institut Français de Bioinformatique - IFB French Institute of Bioinformatics - ELIXIR French Node CNRS UMS3601
Open Access to Manuscripts, Open Science, and Big Data
Open Access to Manuscripts, Open Science, and Big Data Progress, and the Elsevier Perspective in 2013 Presented by: Dan Morgan Title: Senior Manager Access Relations, Global Academic Relations Company
Open Access to publications and research data in Horizon 2020
Open Access to publications and research data in Horizon 2020 Celina Ramjoué Head of Sector Open Access to Scientific Publications and Data Digital Science Unit CONNECT.C3 4 December 2013 Meeting of National
Ins$tut Français de Bioinforma$que Current situa+on and prospect. IFB General Assembly Gif- sur- Yve=e, January 9 2015
Ins$tut Français de Bioinforma$que Current situa+on and prospect IFB General Assembly Gif- sur- Yve=e, January 9 2015 Background 2010: Na+onal Infrastructures in Biology and Health call from the Investment
Data Analytics, Management, Security and Privacy (Priority Area B)
PRIORITY AREA B: DATA ANALYTICS, MANAGEMENT, SECURITY AND PRIVACY ACTION PLAN Data Analytics, Security and Privacy (Priority Area B) Context Data is growing at an exponential rate; information on the web
BIOINFORMATICS Supporting competencies for the pharma industry
BIOINFORMATICS Supporting competencies for the pharma industry ABOUT QFAB QFAB is a bioinformatics service provider based in Brisbane, Australia operating nationwide and internationally. QFAB was established
Intro to Data Management. Chris Jordan Data Management and Collections Group Texas Advanced Computing Center
Intro to Data Management Chris Jordan Data Management and Collections Group Texas Advanced Computing Center Why Data Management? Digital research, above all, creates files Lots of files Without a plan,
DataShare & Data Audit. Lessons Learned. Robin Rice. Digital Curation Practice, Promise and Prospects
DataShare & Data Audit Framework 2007-09: 09: Lessons Learned Robin Rice University of Edinburgh, Scotland Digital Curation Practice, Promise and Prospects Chapel Hill, NC USA April 1-3 2009 A forum for
Data at NIST: A View from the Office of Data and Informatics
Data at NIST: A View from the Office of Data and Informatics Robert Hanisch Office of Data and Informatics Material Measurement Laboratory National Institute of Standards and Technology Data and NIST 1
Cloud-Based Big Data Analytics in Bioinformatics
Cloud-Based Big Data Analytics in Bioinformatics Presented By Cephas Mawere Harare Institute of Technology, Zimbabwe 1 Introduction 2 Big Data Analytics Big Data are a collection of data sets so large
FTP-Stream Data Sheet
FTP-Stream Data Sheet Problem FTP-Stream solves four demanding business challenges: Global distribution of files any size. File transfer to / from China which is notoriously challenging. Document control
Shanoir: So*ware as a Service Environment to Manage Popula9on Imaging Research Repositories
Shanoir: So*ware as a Service Environment to Manage Popula9on Imaging Research Repositories Chris&an Barillot, Elise Bannier, Olivier Commowick, Isabelle Corouge, Jus&ne Guillaumont, Yao Yao, Michael Kain
A Capability Maturity Model for Scientific Data Management
A Capability Maturity Model for Scientific Data Management 1 A Capability Maturity Model for Scientific Data Management Kevin Crowston & Jian Qin School of Information Studies, Syracuse University July
Open Source Software in Life Science Research. Woodhead Publishing Series in Biomedicine
Brochure More information from http://www.researchandmarkets.com/reports/2719842/ Open Source Software in Life Science Research. Woodhead Publishing Series in Biomedicine Description: The free/open source
Enable Location-based Services with a Tracking Framework
Enable Location-based Services with a Tracking Framework Mareike Kritzler University of Muenster, Institute for Geoinformatics, Weseler Str. 253, 48151 Münster, Germany kritzler@uni-muenster.de Abstract.
Software review. Bioinformatics software resources
Bioinformatics software resources Keywords: bioinformatics software archives, web hyperlink catalogues, bioinformatics news Abstract This review looks at internet archives, repositories and lists for obtaining
Eoulsan Analyse du séquençage à haut débit dans le cloud et sur la grille
Eoulsan Analyse du séquençage à haut débit dans le cloud et sur la grille Journées SUCCES Stéphane Le Crom (UPMC IBENS) stephane.le_crom@upmc.fr Paris November 2013 The Sanger DNA sequencing method Sequencing
IO Informatics The Sentient Suite
IO Informatics The Sentient Suite Our software, The Sentient Suite, allows a user to assemble, view, analyze and search very disparate information in a common environment. The disparate data can be numeric
Scholarly Communication A Matter of Public Policy
SCHOLARLY PUBLISHING & ACADEMIC RESOURCES COALITION SPARC Europe Scholarly Communication A Matter of Public Policy David Prosser SPARC Europe Director (david.prosser@bodley.ox.ac.uk) SPARC Europe Scholarly
Towards a galaxy.prabi.fr
Towards a galaxy.prabi.fr IFB- galaxy Day 04/12/2013 Navra5l V., PhD, UCBL navra5l@prabi.fr www.prabi.fr One among the six IFB regional nodes Region: Rhône- Alpes Director: Guy Perrière 11 Research Team,
Statistical Operations: The Other Half of Good Statistical Practice
Integrating science, technology and experienced implementation Statistical Operations: The Other Half of Good Statistical Practice Alan Hopkins, Ph.D. Theravance, Inc. Presented at FDA/Industry Statistics
Flexible Identity Federation
Flexible Identity Federation Quick start guide version 1.0.1 Publication history Date Description Revision 2015.09.23 initial release 1.0.0 2015.12.11 minor updates 1.0.1 Copyright Orange Business Services
A cross-platform model for secure Electronic Health Record communication
International Journal of Medical Informatics (2004) 73, 291 295 A cross-platform model for secure Electronic Health Record communication Pekka Ruotsalainen National Research and Development Centre for
Euro-BioImaging European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences
Euro-BioImaging European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences WP11 Data Storage and Analysis Task 11.1 Coordination Deliverable 11.3 Selected Standards
CSE 599c Scientific Data Management. Magdalena Balazinska and Bill Howe Spring 2010 Lecture 3 Science in the Cloud
CSE 599c Scientific Data Management Magdalena Balazinska and Bill Howe Spring 2010 Lecture 3 Science in the Cloud References Existing Clouds Amazon Web services, Google App Engine, & Windows Azure And
Semantic Workflows and the Wings Workflow System
To Appear in AAAI Fall Symposium on Proactive Assistant Agents, Arlington, VA, November 2010. Assisting Scientists with Complex Data Analysis Tasks through Semantic Workflows Yolanda Gil, Varun Ratnakar,
The Development of the Clinical Trial Ontology to standardize dissemination of clinical trial data. Ravi Shankar
The Development of the Clinical Trial Ontology to standardize dissemination of clinical trial data Ravi Shankar Open access to clinical trials data advances open science Broad open access to entire clinical
Evolving the system towards Horizon2020 and VCMS 1 challenges
TRAME. Text and manuscript transmission of the Middle Ages in Europe. Evolving the system towards Horizon2020 and VCMS 1 challenges The TRAME project. A short description TRAME 2 is a research infrastructure
Data Management and Standardisation in Distributed Systems Biology Research
Data Management and Standardisation in Distributed Systems Biology Research Martin Golebiewski Heidelberg Institute for Theoretical Studies (HITS) Heidelberg, Germany BioMedBridges workshop "Data strategies
How To Write A Blog Post On Globus
Globus Software as a Service data publication and discovery Kyle Chard, University of Chicago Computation Institute, chard@uchicago.edu Jim Pruyne, University of Chicago Computation Institute, pruyne@uchicago.edu
Xerox Workflow Automation Services Solutions Brochure. Xerox DocuShare 7.0. Enterprise content management for every organization.
Xerox Workflow Automation Services Solutions Brochure Xerox DocuShare 7.0 Enterprise content management for every organization. Office Work Can Work Better Despite huge advances in the technology and tools
Science Gateways What are they and why are they having such a tremendous impact on science? Nancy Wilkins- Diehr wilkinsn@sdsc.edu
Science Gateways What are they and why are they having such a tremendous impact on science? Nancy Wilkins- Diehr wilkinsn@sdsc.edu What is a science gateway? science gateway /sī əәns gāt wā / n. 1. an
What the Indiana CTSI HUB is Trying to Accomplish
What the Indiana CTSI HUB is Trying to Accomplish Bill Barnett Director, Information Infrastructures, Indiana CTSI IU School of Medicine and Indiana University Information Technology Services barnettw@iu.edu
Shanoir: Software as a Service Environment to Manage Population Imaging Research Repositories
Shanoir: Software as a Service Environment to Manage Population Imaging Research Repositories Christian Barillot, Elise Bannier, Olivier Commowick, Isabelle Corouge, Justine Guillaumont, Yao Yao, Michael
Integrating Research Information: Requirements of Science Research
Integrating Research Information: Requirements of Science Research Brian Matthews Scientific Information Group E-Science Centre STFC Rutherford Appleton Laboratory brian.matthews@stfc.ac.uk The science
Netherlands escience Center
Netherlands escience Center ICT Synergy Hub, Amsterdam Research & Innovation in the Big Data Era CWI in Bedrijf Centrum Wiskunde & Informatica Op 5 oktober 2012 Prof. dr. Jacob de Vlieg ¹ ² 1. CEO & Scientific
Big Data Analytics- Innovations at the Edge
Big Data Analytics- Innovations at the Edge Brian Reed Chief Technologist Healthcare Four Dimensions of Big Data 2 The changing Big Data landscape Annual Growth ~100% Machine Data 90% of Information Human
FP7-ICT-2013-11-4.2. Scalable Data Analytics. Deadline: 16 April 2013 at 17:00:00 (Brussels local time)
Scalable Data Analytics Deadline: 16 April 2013 at 17:00:00 (Brussels local time) Agenda Time 14H30 Programme Overview of Objective 4.2 Scalable Data Analytics By Carola Carstens, European Commission,
Report of the DTL focus meeting on Life Science Data Repositories
Report of the DTL focus meeting on Life Science Data Repositories Goal The goal of the meeting was to inform and discuss research data repositories for life sciences. The big data era adds to the complexity
Enabling a federated environment to support biomedical research. Gianmauro Cuccuru CRS4
Enabling a federated environment to support biomedical research Gianmauro Cuccuru CRS4 ELIXIR connects national bioinformatics centres and EMBL- EBI into a sustainable European infrastructure for biological
CASC Spring Meeting 2014 Federal Agency Panel Update on Big Data
CASC Spring Meeting 2014 Federal Agency Panel Update on Big Data Robert Chadduck Program Director, Data & CI CISE Division of Advanced Cyberinfrastructure 23 April 2014 ACI data focused CI - A view towards
Work Package 13.5: Authors: Paul Flicek and Ilkka Lappalainen. 1. Introduction
Work Package 13.5: Report summarising the technical feasibility of the European Genotype Archive to collect, store, and use genotype data stored in European biobanks in a manner that complies with all
Alison Yao, Ph.D. July 2014
* Alison Yao, Ph.D. Program Officer, Office of Genomics and Advanced Technologies Division of Microbiology and Infectious Diseases National Institute of Allergy and Infectious Diseases National Institutes
The Platform is the Planet
The Platform is the Planet IoT Solutions in a Heterogeneous World Kevin Miller (kevin.miller@microsoft.com) Principal Program Manager, Azure IoT IoT Solutions Until Now Most earlier successful IoT deployments
Information and Data Sharing Policy* Genomics:GTL Program
Appendix 1 Information and Data Sharing Policy* Genomics:GTL Program Office of Biological and Environmental Research Office of Science Department of Energy Appendix 1 Final Date: April 4, 2008 Introduction
and Deployment Roadmap for Satellite Ground Systems
A Cloud-Based Reference Model and Deployment Roadmap for Satellite Ground Systems 2012 Ground System Architectures Workshop February 29, 2012 Dr. Craig A. Lee The Aerospace Corporation The Aerospace Corporation
Teaching Computational Thinking using Cloud Computing: By A/P Tan Tin Wee
Teaching Computational Thinking using Cloud Computing: By A/P Tan Tin Wee Technology in Pedagogy, No. 8, April 2012 Written by Kiruthika Ragupathi (kiruthika@nus.edu.sg) Computational thinking is an emerging
Data Management in NeuroMat and the Neuroscience Experiments System (NES)
Data Management in NeuroMat and the Neuroscience Experiments System (NES) Kelly Rosa Braghetto Department of Computer Science Institute of Mathematics and Statistics - University of São Paulo 1st NeuroMat
Exploring the roles and responsibilities of data centres and institutions in curating research data a preliminary briefing.
Exploring the roles and responsibilities of data centres and institutions in curating research data a preliminary briefing. Dr Liz Lyon, UKOLN, University of Bath Introduction and Objectives UKOLN is undertaking