1 Unvan ve Görevler Ekim 2014 devam ediyor : Doç. Dr. Karabük Üniversitesi, Tıp Fakültesi, Biyoistatistik AD Ağustos 2008 Ekim 2014 : Yrd. Doç. Dr. Selçuk Üniv. Zir. Fak. Zootekni Böl. Biyometri- Genetik AD Ağustos 2007 Ağustos 2008: Dr. Araştırmacı, ReproGen, The University of Sydney, Ağustos 2007: Yrd. Doç. Dr. Selçuk Üniv. Zir. Fak. Zootekni Böl. Biyometri-Genetik AD : Bilim insanı, Livestock Improvement Co, Hamilton, New Zealand : Ar. Gör. Selçuk Üniv. Zir. Fak. Zootekni Böl. Biyometri-Genetik AD İdari Görevler Tıp Bilişimi AD Başkanı 2015 Devam ediyor Eğitim Lisans Ankara Üniversitesi, Ziraat Fakültesi, Zootekni Bölümü Yüksek lisans The University of Sydney, Biometry Doktora The University of Sydney, Biometry Tezler Yüksek lisans Doktora Tez Özeti A Statistical Model for QTL Analysis of Litter Size in Mice. A Generalised Linear Model Approach to QTL Analysis of Litter size in Mice. Yayınlar Kitap ve Kitap Bölümleri SCI, SCIE, SSCI kapsamındaki uluslararası dergilerde ki makaleleri 1. Boztepe S, Hodoglugil S, Kayis SA, Ozbayat, H. I. (1999). Reproduction traits of Holstein and Brown Swiss cattle. Indian Veterinary Journal, 76 (5) [SCI, SCI-Expanded]. 2. AK, A., OGUN, C.O. A. BAYIR, A., KAYIS, S.A., and KOYLU, R. (2006). Prediction of Arterial Blood Gas Values from Venous Blood Gas Values in Patients with Acute Exacerbation of Chronic Obstructive Pulmonary Disease. Tohoku J. Exp. Med. 210(4), (http://journal.med.tohoku.ac.jp/2104/tj2104.html). [SCI, SCI-Expanded]. 3. HAKKI, E.E., KAYIS, S.A., PINARKARA, E., and SAG, A. (2007). Inter Simple Sequence Repeats Separate Efficiently Hemp from Marijuana (Cannabis sativa L.). Electronic Journal of Biotechnology [online]. DOI: /vol10-issue4-fulltext-6, 10(4), (http://www.ejbiotechnology.info/content/vol10/issue4/full/4/4.pdf) 4. PINARKARA, E., KAYIS, S.A., HAKKI, E.E., and SAG, A. (2009). RAPD analysis of seized marijuana (Cannabis sativa L.) in Turkey. Electronic Journal of Biotechnology [online]. DOI: /vol12-issue1-fulltext-7, 12(1). (http://www.ejbiotechnology.info/content/vol12/issue1/full/7/7.pdf ). [SCI, SCI-Expanded]. 5. ATLI, M.O. KURAR, E. KAYIS, S.A. ASLAN, S. SEMACAN, A. CELIK, S. GUZELOGLU, A. (2010). Evaluation of genes involved in prostaglandin action in equine endometrium during estrous cycle and early pregnancy. Animal Reproduction Science, 122(1-2): DOI: /j.anireprosci [SCI, SCI-Expanded].
2 6. KAYIS, S.A., HAKKI, E.E., PINARKARA, E. (2010). Comparison of effectiveness of ISSR and RAPD markers in genetic characterization of seized marijuana (Cannabis sativa L.) in Turkey. African Journal of Agricultural Research. 5(21): (http://www.academicjournals.org/ajar/pdf/pdf%202010/4%20nov/kayis%20et%20al.pdf). [SCI, SCI-Expanded]. 7. KAYIS, S.A, ATLI, M.O. KURAR, E. BOZKAYA, F., SEMACAN, A. ASLAN, S., GUZELOGLU, A. (2011). Rating of putative housekeeping genes for quantitative gene expression analysis in cyclic and early pregnant equine endometrium. Animal Reproduction Science, 125(1-4): DOI: /j.anireprosci [SCI, SCI-Expanded]. 8. KAYIS, S.A. (2011). Evaluation of confidence limit estimates of cluster analysis on molecular marker data. Journal of the Science of Food and Agriculture. 92(4): DOI: /jsfa [SCI, SCI-Expanded]. 9. ATLI, M.O. GUZELOGLU, A. KURAR, E. KAYIS, S.A. ASLAN, S. SEMACAN, A. CELIK, S. (2012). Expression of Epidermal Growth Factor (EGF) and Heparin-Binding EGF (HB-EGF) mrna in Mare Endometrium. Kafkas Universitesi Veteriner Fakultesi Dergisi 18 (3) [SCI, SCI-Expanded]. 10.Gonen, M.S. Arikoglu, H. Erkoc Kaya, D. Ozdemir, H. Ipekci, S.H. Arslan, A. Kayis, S.A. Gogebakan, B. (2012). Effects of Single Nucleotide Polymorphisms in KATP Channel Genes on Type 2 Diabetes in a Turkish Population. Archives of Medical Research. 43(4) [SCI, SCI-Expanded]. 11.H. Alptekin, H. Yilmaz, S.A. Kayis, M. Sahin Volume of the excised specimen and prediction of surgical site infection in pilonidal sinus procedures (surgical site infection after pilonidal sinus surgery). Surgery Today. DOI: /s x. [SCI, SCI- Expanded].  12.Hakki, SS, Ataoglu, Tamer, Hakki, EE, Kayis SA (2013). Re: Real-Time Quantitative Polymerase Chain Reaction Analysis of Patients With Refractory Chronic Periodontitis. Marconcini S, Covani U, Barone A, et al. (J Periodontol 2011;82: ). JOURNAL OF PERIODONTOLOGY, 84 (3) doi: /jop S.S. Hakki, N. Dundar, S.A. Kayis, E.E. Hakki, M. Hamurcu, U. Kerimoglu, N. Baspinar, A. Basoglug, F.H. Nielsen Boron enhances strength and alters mineral composition of bone in rabbits fed a high energy diet. J. Trace Elem. Med. Biol., 27(2): DOI: /j.jtemb [SCI, SCI-Expanded]. 14.A. AĞAOĞLU, Ö. KORKMAZ-AĞAOĞLU, E. KURAR, A. GÜZELOĞLU, S.A. KAYIŞ, M.O. ATLI, S. SCHAFER-SOMI, S. ASLAN Expression of platelet activating factors and its receptor in cat uterus during early pregnancy. Ankara Üniv Vet Fak Derg, 60, [SCI, SCI-Expanded]. 15.A. Guzeloglu, M.O. Atli, E. Kurar, S.A. Kayis, J. Handler, A. Semacan, S. Aslan. (2013). Expression of Enzymes and Receptors of Leukotriene Pathway Genes in Equine Endometrium during the Estrous Cycle and Early Pregnancy. Theriogenology. 80: DOI: /j.theriogenology [SCI, SCI-Expanded].
3  16.Hakki SS, Bozkurt SB, Hakki EE, Kayis SA, Turac G, Yilmaz I, Karaoz E. (2014). Bone morphogenetic protein-2, -6, and -7 differently regulate osteogenic differentiation of human periodontal ligament stem cells. Journal of Biomedical Material Research Part B B DOI: /jbm.b [SCI, SCI-Expanded]. 17.Arikoglu, H., Ozdemir, H., Kaya-Erkoc, D., Ipekci, S.H., Arslan, A., Kayis, S.A., Gonen, M.S. (2014). The Adiponectin variants contribute to the genetic background of type 2 diabetes in Turkish population. Gene. 34(1), DOI: /j.gene [SCI, SCI- Expanded]. 18.Kara H, Bayir A, Degirmenci S, Kayis SA, Akinci M, Ak A, Celik B, Dogru A, Ozturk B. (2014). D-dimer and D-dimer/fibrinogen ratio in predicting pulmonary embolism in patients evaluated in a hospital emergency department. Acta Clinica Belgica, 69(4), DOI: 19.Kara, H., Bayir, A., Degirmenci, S., Akinci, M., Ak, A., Kayis, S.A., Agacayak, A. (2014). Causes of poisoning in patients evaluated in a hospital emergency department in Konya, Turkey. Journal of the Pakistan Medical Association 64 (9) Erdogan E. HAKKI, Nurdan DOGRAR, Anamika PANDEY, Mohd. Kamran KHAN, Mehmet HAMURCU, Seyit A. KAYIS, Sait GEZGIN, Fatih OLMEZ, Mahinur S. AKKAYA. (2014). Molecular and Elemental Characterization of Selected Turkish Durum Wheat Varieties. Not Bot Horti Agrobo, 42(2):  21.Sema S.Hakki, Siddik Malkoc, Niyazi Dundar, Seyit Ali Kayis, Erdogan E Hakki, Mehmet Hamurcu, Nuri Baspinar, Abdullah Basoglu, Forrest H. Nielsen, Werner Götz. (2015). Dietary boron does not affect tooth strength, micro-hardness, and density, but affects tooth mineral composition and alveolar bone mineral density in rabbits fed a high-energy diet. Journal of Trace Elements in Medicine and Biology doi: /j.jtemb Hakki, S.S., Kayis, S.A., Hakki, E.E., Bozkurt, S.B., Duruksu, G., Unal, Z.S. Turac, G., Karaoz, E. (2015). Comparison of Mesenchymal Stem Cells Isolated From Pulp and Periodontal Ligament. Journal of Periodontology 86(2) DOI: /jop Kara, H., Degirmenci, S., Ak, A., Bayir, A., Kayis, S.A., Uyar, M., Akinci, M., Acar, D., Kocacan, M., Akyurek F. (2015). Neuroprotective effects of sildenafil in experimental spinal cord injury in rabbits. Bosn J Basic Med Sci. 8; 15(1): doi: /bjbms Kara, H., Degirmenci, S., Bayir, A., Ak, A., Akinci, M., Dogru, A., Akyurek, F., Kayis, S.A. (2015). Red cell distribution width and neurological scoring systems in acute stroke patients. Neuropsychiatric Disease and Treatment, 11: DOI 25. Korkmaz-Agaoglu, O., Agaoglu A.R., Guzeloglu, A., Kurar E., Kayis, S.A., Ozmen, O., Schäfer-Somi, S., Aslan, S. (2015). Expression of hypoxia-inducible factors and vascular endothelial growth factor during pregnancy in the feline uterus. Theriogenology, doi: /j.theriogenology
4 Diğer uluslararası dergilerde ki makaleleri
5 Ulusal hakemli dergilerde ki makaleleri 1. BOZTEPE, S., ÖZBAYAT, H.İ. and KAYIŞ, S.A. (1993). Kıl keçilerinde kan potasyum ve hemoglobin polimorfizmi (Blood potassium and hemoglobin polymorphism in hair goat). Selçuk Üniversitesi Ziraat Fakültesi Dergisi. 3(5) ÖZTÜRK, A., KAYIŞ, S.A., PARLAT, S.S. and GÜRKAN, M. (1994). Konya merinoslarında bazı vücut ölçülerinden canlı ağırlığın tahmini olanakları (Possibilities of estimation of body weight by some body measurements in Konya merino sheep). Hayvancılık Araştırma Dergisi 4(1), KARADAVUT, U., and KAYIŞ, S.A. (2006). Beş buğday çeşidinin toprak üstü ağırlıklarının büyüme eğrileri yoluyla karşılaştırılması üzerine bir uygulama (A growth curve application to compare weights of five wheat varieties). Selçuk Üniversitesi Ziraat Fakültesi Dergisi. 20(40) YALÇIN, H., KAYIŞ, S.A., and ARSLAN, A. (2007). Ağaç yer sincabı ve rat ın mandibula sı üzerinde karşılaştırmalı makro-anatomik mekanik ve geometrik morfometrik çalışma (A Comparative Macro-Anatomic, Mechanical and Geometric Morphometrics Study on Tree and Ground Squirrel and Rat). Selçuk Üniversitesi Veteriner Fakültesi, Veteriner Bilimleri Dergisi. 23(1), KARADAVUT, U. KAYIS, S.A., PALTA C. and OKUR, O. (2008). A Growth Curve Application to Compare Plant Heights and Dry Weights of Some Wheat Varieties. American- Eurasian J. Agric. & Environ. Sci. 3(6), (available online 6. KARADAVUT, U. KAYIS, S.A, KESKİN İ (2011). Bazı Bakla (Vicia Faba L.) Genotiplerinde Tane Verimi ve Verime Etki Eden Özellikler Arasıdaki İlişkilerin Belirlenmesi. Anadolu journal of Agricultural Science, 26(1): KURAR E., M.O. ATLI, GUZELOGLU A., S.A. KAYIS, SEMACAN, A Expression of Toll-like receptors (TLRs) in the equine peripheral blood mononuclear cells (PBMCs) during the early pregnancy and estrous cycle. Euroasian Journal of Veterinary Sciences, 28(2): Uluslararası toplantılarda sunulan bildirileri
6 ORAL PRESENTATIONS 1. KAYIS, S.A., THOMSON, P.C. and NICHOLAS, F.W. (1996). QTL analysis of discrete backcross data using the E-M algorithm. The XVIIIth International Biometrics Conference (IBC'96), p. 156 [Oral presentation]. 2. KAYIS, S.A., THOMSON, P.C., and NICHOLAS, F.W. (1998). QTL analysis of discrete backcross data using the E-M algorithm. The 6th World Congress On Genetics Applied to Livestock Production (6th WCGALP) 26, [Oral presentation]. 3. THOMSON, P.C., KAYIS, S.A. and NICHOLAS, F.W. (1998). A Poisson GLM application to QTL analysis of discrete backcross data using the E-M algorithm. 14th Australian Statistical Conference, Gold Coast, Australia. p. 149 [Oral presentation]. 4. KAYIS, S.A., THOMSON, P.C. and NICHOLAS, F.W. (1998). A Poisson GLM application to QTL analysis of discrete backcross data using the E-M algorithm. 45th Annual Conference. Genetics Society of Australia, Sydney, Australia, abstract 31, p. 67 [Oral presentation]. 5. KAYIS, S.A., THOMSON, P.C., and NICHOLAS, F.W. (1999). A Poisson GLM Application to QTL Analysis of Discrete F2 Generation Data Using the E-M Algorithm. 13th AAABG Conference. 4-7 July 1999, Mandurah, WA, Australia. p [Oral presentation]. 6. KAYIS, S.A., MAQBOOL, N.J., THOMSON, P.C., MORAN, C., and NICHOLAS, F.W. (1999). Comparing various models for detecting litter-size QTL. 13th AAABG Conference. 4-7 July 1999, Mandurah, WA, Australia. p [Oral presentation]. 7. KAYIS, S. A., and SPELMAN, R. J. (2003). Heritability analyses of natural nematode challenge. 15th AAABG Conference July 2003, Melbourne, Australia p [Oral presentation]. 8. THOMSON, P.C., and KAYIS, S.A. (2003). Some approaches to QTL detection of non-normal traits. Bioinformatics Symposium (Sydney University Biological Informatics and Technology Centre; SUBIT). 1-2 September 2003, Sydney, Australia p22 [Oral presentation]. 9. SPELMAN, R.J., HOOPER, J.D., STANLEY, G., KAYIS, S.A., and HARCOURT, S. (2004). Friesian Jersey crossbred trial: Generating phenotypes for the discovery of quantitative trait loci. Proceedings of the New Zealand Society of Animal Production 28 June-1 July 2004, Hamilton, New Zealand. 64: [Oral presentation]. 10. KAYIŞ, S.A., HAKKI, E.E., PINARKARA, E., ve SAĞ, A. (2007). Dominant Genetik Markörlerin İstatistiki Analiazleri. XV. Ulusal Biyoteknoloji Kongresi Ekim Antalya. p [Oral presentation]. 11. KAYIS, S.A., THOMSON, P.C., KHATKAR, M.S., and RAADSMA, H.W. (2009). QTL Score Approach for Meta-analysis of QTL Location. 5 th Conference of the Eastern Mediterranean Region of the International Biometric Society May 2009, Istanbul, Turkey. p. 96 [Oral presentation]. 12. ELLIS, N.A., KAYIS S.A., FULLARD K.J., TOWNLEY D.J., KHATKAR D., ATTARD G., BEH K., PIEDRAFITA D., RAADSMA H.W. (2009). Targeted Mapping of QTL on Chromosomes 1 and 3 for Parasite Resistance in Sheep. Proceedings of the 18th Conference: Association for the Advancement of Animal Breeding and Genetics. pp , Barossa Valley, SA, AUSTRALIA, 28 September - 1 October 2009 [Oral presentation]. 13. ATLI, M.O., KURAR, E., KAYIS, S.A., ASLAN, S., SEMACAN A., CELIK, S., GUZELOGLU, A. (2010). Expression of Toll-like Receptors (TLRs) in the Equine
7 Endometrium during the Estrous Cycle. 14th Annual Conference of theeuropean-societies- Domestic-Animals-Reproduction/22nd Annual Meeting of the EU-AI-Vets, SEP 15-22, 2010 Eger, HUNGARY. REPRODUCTION IN DOMESTIC ANIMALS Volume: 45, Pages: 58-58, Supplement: Suppl. 3 Published: SEP 2010 [Oral presentation]. 14. Güzeloğlu A., M.O. Atlı, E. Kurar, S.A. Kayış, S. Aslan, A. Semacan, S. Çelik Erken gebelik kısrak endometriumunda luteolitik mekanizma ile alakalı gen ekspresyonunu düzenlemektedir. IV. Türk Veteriner Jinekoloji Kongresi, 4-7 Kasım 2010, Antalya [Oral presentation]. 15. A. AK, A. BAYIR, F. AKYÜREK, D. ACAR, S.A. KAYIŞ, H. KARA, H. YILMAZ Diagnostic value of ischemia modified albumin and D-Dimer in patients with acute appendicitis. 3rd EACEM EurAsian Congress on Emergency Medicine in conjuction with 8th Turkish Emergency Medicine Congress (TATKON). P. 70, September 2012, Antalya, Turkey [Oral presentation]. 16. A. AK, H. KARA, A. BAYIR, A. DOĞRU, S.A. KAYIŞ, A.S. KIVRAK, M.E. KAFALI, F. KARA Diagnostic values of modified alvarado scores and imaging examinations in acute appendicitis. 3rd EACEM EurAsian Congress on Emergency Medicine in conjuction with 8th Turkish Emergency Medicine Congress (TATKON). P. 71, September 2012, Antalya, Turkey [Oral presentation].  17. Hakki SS, Kayis SA, Hakki EE, Bozkurt SB, Unal ZS, Duruksu G, Turac G, Erman G, karaoz E. (2013). Periodontal Ligament ve Pulpa Kök Hücrelerinde Mezensimal Kök Hücre Spesifik Genlerin Ekspresyon Seviyesindeki Farkliliklar. Türk Periodontoloji Dernegi 43. Bilimsel Kongresi, Izmir, 9-11 Mayis 2013 [Oral presentation]. 18. Khan, M. K., Pandey,A., Harmankaya, M., Hamurcu, M., Gezgin, S., Akkaya, M.S., Kayis, S.A., Thomas, G., Hakki, E.E. (2013). "Farklı Buğday Agroklimatik Kuşaklarına Ait Makarnalık ve Ekmeklik Hindistan Buğdaylarının Mikroelement ve Protein içerikleri." 6. Ulusal Bitki Besleme ve Gübre Kongresi Haziran 2013, Nevşehir: [Oral presentation]. 19. S. COSKUNER, N.O. ALPTEKIN, B. UCAR, H. ACAR, and S.A. KAYIS. (2013). MCP-1 Gene Expression in Aggressive Periodontitis. 46th Meeting of the Continental European Division of the International Association for Dental Research with the Scandinavian Division (NOF). September 4-7, 2013, Florence, Italy. [Oral presentation]. Online abstract: https://iadr.confex.com/iadr/ced13/webprogram/paper html 20. A. Guzeloglu, M.O. Atli, E. Kurar, S.A. Kayis, A. Semacan, S. Aslan, M.S. Kayaç (2013). Preliminary Expression Analysis of Global microrna and Biogenesis Pathway in Equine Endometrium during the Estrous Cycle and Early Pregnancy. 17th Annual Conference of theeuropean-societies-domestic-animals-reproduction, SEP 12-14, Bologna, Italy. Reproduction in Domestic Animals, Volume: 48 Supplement: 1 Pages: [Oral presentation].
8  21.H. Alptekin, H. Yılmaz, F. Acar, E. Kafalı, S.A. Kayış, M. Şahin, A. Çalışır Total Tiroidektomi ve Paratiroid Hormonu: Hipokalsemiye eğilimli Hastaların Belirleyicisi. 19. Ulusal Cerrahi Kongresi, SS-250, Nisan 2014, Antalya, Türkiye. [Özet; sözlü sunu]. 22.Aydilek, N, Guzeloglu, A., Atli, M.O., Kayis, S.A., Kurar, E., Bozkaya, F., Yildirim, M.E., Kose, M., Kaya, M.S., Varisli, O. (2014). Effects of long-term heat stress and dietary restriction on microrna expressions in rat testicular tissue. Conference: 18th Annual Conference of the European-Society-for-Domestic-Animal-Reproduction (ESDAR) Location: Helsinki, FINLAND Date: SEP 11-13, REPRODUCTION IN DOMESTIC ANIMALS Volume: 49 Special Issue: SI Supplement: 3 Pages: Meeting Abstract: OC Agaoglu, A.R., Agaoglu, O.K., Kurar, E., Guzeloglu, A., Kayis, S.A., Aslan, S., Schafer-Somi, S. (2014). Gene expression profiles of cytokines (GM-CSF, IFN gamma, MMP2), growth factors (IGF-2, EGF, TGF-beta) and IGF2R during pregnancy in cat uterus. Conference: 18th Annual Conference of the European-Society-for-Domestic-Animal-Reproduction (ESDAR) Location: Helsinki, FINLAND Date: SEP 11-13, 2014 Sponsor(s): European Soc Domest Anim Reprod REPRODUCTION IN DOMESTIC ANIMALS Volume: 49 Special Issue: SI Supplement: 3 Pages: Meeting Abstract: OC 5.4 POSTER PRESENTATIONS 1. HAKKI, E.E., PINARKARA, E., KAYIS, S.A., and SAG, Ayla. (2006). Genetic relatedness analyses of cannabis sativa L. from different geographic regions of Anatolia. The 4 th European Academy of Forensic Science Conference (EAFS2006) June Helsinki, Finland. Abstract p PINARKARA, E., KAYIŞ, S.A., HAMURCU, M., GEZGİN, S., SAĞ, A., and HAKKI, E.E. (2006). Uyuşturucu Tipi Kenevir Genotiplerinin Bora Tepkileri (Response of Drug Type Cannabis Genotypes to Boron). III. Uluslararası Bor Sempozyumu. 2-4 Kasım 2006, Ankara, Türkiye, p ELLIS, N.A., FULLARD, K.J., KAYIS, S.A., KHATKAR, D., ATTARD, G., BEH, K.J., PIEDRAFITA, D., and RAADSMA, H.W. (2008). Fine Mapping of QTL for Parasite Resistance in Sheep. 31 st Conference of the International Society of Animal Genetics (ISAG). July 20-24, 2008, Amsterdam, The Netherlands. (http://www.isag.us/docs/proceedings/isag_proceedings_2008.pdf) 4. KARABACAK A., KAYIŞ, S.A., KESKİN İ., and DAĞ, B. (2009). Farklı Koyun ırklarına ait Karkasların Ayırma Analizi Kullanılarak Sınıflandırılması. Türkiye Koyunculuk Kongresi Şubat, 2009, İzmir, Türkiye, p KARADAVUT U., PALTA Ç., KAYIŞ S.A., KESKİN İ., ÇARKACI A., OKUR O. (2009). Ekmeklik Buğday Çesitlerinin Birbirlerinden Ayrılmasında Temel Bileşenler Analizinin Uygulanabilirliği. 6. Ulusal Zootekni Bilim Kongresi Haziran 2009 Erzurum. 6. GUZELOGLU, A., ATLI, M.O., KURAR, E., SEMACAN A., ASLAN, S., KAYIS, S.A., and CELIK, S. (2009). Estrogen Receptor (ER), ER and Progesterone Receptor (PR) Expression in Equine Endometrium during Estrous Cycle and Early Pregnancy. 13 th Annual Conference of the European Society for Domestic Animal Reproduction (ESDAR) September,
9 (s3): p.106. (http://www3.interscience.wiley.com/cgibin/fulltext/ /pdfstart). 7. GUZELOGLU, Aydin, ATLI, Mehmet Osman, KURAR, Ercan, SEMACAN, Ahmet, ASLAN, Selim, KAYIS, Seyit Ali, CELIK, Sefa. (2009). Evaluation of Genes Involved in Prostaglandin Action in Equine Endometrium During Estrous Cycle and Early Pregnancy. Biol Reprod, 81: 311, 1_MeetingAbstracts, (http://www.biolreprod.org) 8. KAYIS, S. A., PINARKARA, E., UYGAN, S., and HAKKI, E. E. (2009). Evaluation of confidence interval estimates of cluster analysis in molecular marker data. New Biotechnology, 25: Supplement 1, Abstract p. S305. doi: /j.nbt HAKKI, E. E., KAYIŞ, S. A., PINARKARA, E., UYGAN, S., HAMURCU, M., and GEZGİN, S. (2009). Evaluating Boron Accumulating Potential of Cannabis sativa L. International Symposium on Biotechnology: Developments and Trends September, Ankara, Turkey. p PINARKARA, E., UYGAN, S., KAYIŞ, S. A. and HAKKI, E. E. (2010). Real Time PCR Verilerinin Normalizasyonunda PCR Etkinliğinin Önemi. VI. Ulusal Zootekni Öğrenci Kongresi Mayıs 2010, Konya, TÜRKİYE, p ATLI, M.O., KURAR, E., KAYIS, S.A., ASLAN, S., SEMACAN A., CELIK, S., GUZELOGLU, A. (2010). Expression of Toll-like Receptors (TLRs) Is Regulated by Early Pregnancy in the Mare Endometrium. 43rd Annual Meeting of the Society-for-the-Study-of- Reproduction, The Intersection Between Genetics, Genomics, and Reproductive Biology. 30 July 3 August 2010 Midwest Airlines Center Milwaukee, Wisconsin. P. 78., a KURAR, E., ATLI, M.O., KAYIS, S.A., ASLAN, S., SEMACAN A., CELIK, S., GUZELOGLU, A. (2010). Expressions of Insulin-Like Growth Factor-Binding Proteins (IGFBP) in Mare Endometrium during Estrous Cycle and Early Pregnancy. 43rd Annual Meeting of the Society-for-the-Study-of-Reproduction, The Intersection Between Genetics, Genomics, and Reproductive Biology. 30 July 3 August 2010 Midwest Airlines Center Milwaukee, Wisconsin. P. 79., a ATLI, M.O., KURAR, E., KAYIS, S.A., ASLAN, S., SEMACAN A., CELIK, S., GUZELOGLU, A. (2010). Epidermal growth factor (EGF) and heparin binding-egf (HB- EGF) mrna expressions in cyclic and pregnant mare endometrium. 14th Annual Conference of theeuropean-societies-domestic-animals-reproduction/22nd Annual Meeting of the EU-AI- Vets, SEP 15-22, 2010 Eger, HUNGARY. REPRODUCTION IN DOMESTIC ANIMALS Volume: 45, Pages: Supplement: Suppl. 3 SEP KURAR, E., ATLI, M.O., KAYIS, S.A., ASLAN, S., SEMACAN A., CELIK, S., GUZELOGLU, A. (2010). Expressions of Insulin-Like Growth Factor (IGF)-I, -II and their receptor genes are regulated in mare endometrium during estrous cycle and early pregnancy. 14th Annual Conference of theeuropean-societies-domestic-animals-reproduction/22nd Annual Meeting of the EU-AI-Vets, SEP 15-22, 2010 Eger, HUNGARY. REPRODUCTION IN DOMESTIC ANIMALS Volume: 45, Pages: Supplement: Suppl. 3 Published: SEP ARIKOGLU, H., OZDEMIR, H., AKSOY-HEPDOGRU, M., GONEN, M.S., ERKOC- KAYA, D., KAYIS, S.A. (2011). The Study Of SER892GLY and GLY972ARG Polymorphisms of IRS-1 Gene in Type 2 Diabetic Patients in Konya Region. 4th International Congress of Molecular Medicine, June, 2011 Istanbul, Turkey. In Vivo, 25, p.511, a OZDEMIR, H., TURHAN, A.B., ARIKOGLU, H., GONEN, M.S., KAYIS, S.A. (2011). Association Of The SNP-19 in The Calpain-10 Gene With Type 2 Diabetes Patients in Turkish Population. 4th International Congress of Molecular Medicine, June, 2011 Istanbul,
10 Turkey. In Vivo, 25, p.549, a YOSUNKAYA, S., KUCCUKTURK, S., KUZU-OKUR, H., KAYIS, S.A. (2011). Lipid Profile, Central Obesity, Obesity and GLN223ARG Leptin-Receptor Gene Polymorphism in Turkish Men with Obstructive Sleep Apnea Syndrome. 4th International Congress of Molecular Medicine, June, 2011 Istanbul, Turkey. In Vivo, 25, p.572, a YOSUNKAYA, S., KUCCUKTURK, S., KUZU-OKUR, H., KAYIS, S.A. (2011). Q223R Polymorphism and Leptin Levels in Patients with Obstructive Sleep Apnea Syndrome. 4th International Congress of Molecular Medicine, June, 2011 Istanbul, Turkey. In Vivo, 25, p.572, a KAYIS, S.A, ATLI, M.O, KURAR, E., BOZKAYA F., SEMACAN A., ASLAN, S., GUZELOGLU A. (2011). Selection of housekeeping gene for quantitative gene expression in cyclic and early pregnant equine endometrium. 15th Annual Conference of the European- Society-for-Domestic-Animal-Reproduction (ESDAR), Antalya, TURKEY, September REPRODUCTION IN DOMESTIC ANIMALS Volume: 46 Special Issue: SI Supplement: 3 Pages: Published: SEP GUZELOGLU A, KAYIS S.A, ATLI MO, KURAR E, SEMACAN A, ASLAN S. (2011). PLS-DA Approach For Simultaneous Evaluation Of Genes Involved in Luteolysis in Equine Endometrium During Estrous Cycle And Early Pregnancy. Current Opinion in Biotechnology 22: S HAKKI E.E, UYGAN S, HAMURCU M, GEZGIN S, BOZKURT BS, KAYIS S.A. (2011) Evaluation of Puroindoline B as a House Keeping Gene in Wild Wheat Species. Current Opinion in Biotechnology 22: S M.S. Gönen, H. Arıkoğlu, D. Erkoç-Kaya, H. Özdemir, S.H. İpekci, A. Arslan, S.A. Kayış, B. Göğebakan SUR 1 (sülfonilüre reseptör 1) gen polimorfizmlerinin tip 2 diyabet gelişimine etkileri. 34.Türkiye Endokrinoloji ve Metabolizma Hastalıkları Kongresi, pp , Nisan 2012, Antalya. 23. H. Artac, H. Vatansev, D. Cimen, D. Arslan, F. Kaya, S.A. Kayis, B. Oran Is N- terminal pro-b-type nariuretic peptide levels affected in patients with allergic rhinitis? European Academy of Allergy and Clinical Immunology Congress, a. 452, June, Geneva, Switzerland. 24. H.Kara, A. Ak, A. Bayır, S.A. Kayış, A. Ağaçayak, E. Marçıl The effects of carrying the blood samples through pneumatic tube system or with hands on hemolyze. 3rd EACEM EurAsian Congress on Emergency Medicine in conjuction with 8th Turkish Emergency Medicine Congress (TATKON). P. 312, September 2012, Antalya, Turkey S.A. Kayis, A. Tamkoc, S. Uygan, E.E. Hakki ISSR analysis of perennial ryegrass (Lolium perenne L.) genotypes and association study between phenotypes and genotypes. 15th European Congress on Biotechnology, September 2012, Istanbul, Turkey. New Biotechnology, 29 (Supplement), S139. DOI: 26. E.E. Hakki, A. Tamkoc, M. Hamurcu, N. Can, T. Demiral, S. Gezgin, C. Ozdemir, N. Ersoy, S.A. Kayis Evaluation of serine carboxypeptidase (PsCP) gene expression in Pisum arvense L. grown under different boron levels. 15th European Congress on Biotechnology, September 2012, Istanbul, Turkey. New Biotechnology, 29 (Supplement), S135. DOI:
11  27.S.S. Hakki, S.A. Kayis, S.B. Bozkurt, E.E. Hakki, I. Yilmaz, E. Karaoz. (2013). Osteogenic and proliferative potentials of MSCs isolated from different teeth. 91 st General Session & Exibition of the International Association for Dental Research (IADR) Congress, a.3899, March 2013, Seatle, Washington, USA. 28.S.S. HAKKI, S. MALKOC, N. DUNDAR, S. A. KAYIS, E. E. HAKKI, M. HAMURCU N. BASPINAR, A. BASOGLU, F.H. NIELSEN, W. GOTZ (2013). Dietary boron does not affect teeth strength, micro-hardness, and density, but affects mineral composition and alveolar bone mineral density in rabbits fed a high-energy diet. Fifth International Congress of the Federation of the European Societies for Trace Elements and Minerals. P. 55, Avignon, France, May 22-24, Pandey, A., Khan, M.K., Hakki, E.E., Hamurcu, M., Harmankaya, M., Akkaya, M.S., Thomas, G. Kayis, S.A., Gezgin, S (2013). "Hindistan Buğdayları-Makroelement Rezervuarı Olabılır mi?" 6. Ulusal Bitki Besleme ve Gübre Kongresi Haziran 2013, Nevşehir: Hakki, E. E., Pandey,A., Khan, M.K., Hamurcu, M., Harmankaya, M., Gezgin, S., Thomas, G., Kayis, S.A., Akkaya, M.S. (2013). "Hint ve Türk Buğday Danelerinde Kükürt içeriği Toprağın Bir Yansıması." 6. Ulusal Bitki Besleme ve Gübre Kongresi Haziran 2013, Nevşehir: D. Erkoc Kaya, H. Arikoglu, H. Ozdemir, M. Gonen, S. Kayis. (2013). Does TCF7L2 gene predicts type 2 diabetes also in Turkish? European Human Genetics Conference, P04.91, June 8-11, 2013, Paris, France. 32. H. Arikoglu, D. Erkoc Kaya, H. Ozdemir, S. Ipekci, A. Arslan, S. Kayis, M. Gonen. (2013). The adiponectin variants contribute to the genetic architecture of type 2 diabetes in Turkish. European Human Genetics Conference, P04.94, June 8-11, 2013, Paris, France. 33. A. Kalayci, T. Cora, H. Acar, E. Kurar, S. Kayis, A. Guzeloglu, B. Colpan, K. Ozturk, M. Hitit. (2013). Selection of reliable housekeeping gene for qrt-pcr analysis on head and neck squamose cell carcinomas (HNSCC). European Human Genetics Conference, P12.14, June 8-11, 2013, Paris, France. 34. Erdogan E. Hakki, Mohd Kamran Khan, Anamika Pandey, Mustafa Harmankaya, Mehmet Hamurcu, Sait Gezgin, S. Ali Kayis, George Thomas, Mahinur Akkaya (2013). Wheat Nutrients An Equal Concern for Different Realms. XVII. INTERNATIONAL PLANT NUTRITION COLLOQUIUM AUGUST 2013, ISTANBUL, TURKEY. Pp [poster presentation]. 35. Mohd Kamran Khan, Anamika Pandey, Mustafa Harmankaya, Sait Gezgin, Mehmet Hamurcu, Mahinur S. Akkaya, Seyit Ali Kayis, George Thomas, Erdogan E. Hakki (2013). Zinc and Protein in Indian and Turkish Wheat - Are influencing the lives? XVII. INTERNATIONAL PLANT NUTRITION COLLOQUIUM AUGUST 2013, ISTANBUL, TURKEY. Pp [poster presentation]. 36. Anamika Pandey, Mohd Kamran Khan, Erdogan E. Hakki, Mehmet Hamurcu, Mustafa Harmankaya, Mahinur S. Akkaya, Seyit Ali Kayis,George Thomas, Sait Gezgin (2013). Wheat Can be a Remedy for Iron Deficiency? XVII. INTERNATIONAL PLANT NUTRITION COLLOQUIUM AUGUST 2013, ISTANBUL, TURKEY. Pp [poster presentation].
12 37. M. Hitit, M.O. Atli, E. Kurar, M. Kose, A. Guzeloglu, M.S. Kaya, Z. Kiyma, S.A. Kayis (2013). Investigation of microrna Biogenesis at mrna Level in Bovine Corpus Luteum and Endometrium during the Estrous Cycle. 17th Annual Conference of the European-Societies- Domestic-Animals-Reproduction, SEP 12-14, 2013 Bologna, Italy. Reproduction in Domestic Animals, 48 (S1): E. Kurar, A. Guzeloglu, M.O. Atli, S.A. Kayis, S.Aslan, A. Semacan (2013). Expression of α subunits of hypoxia inducible factor (HIF) mrna are regulated during the estrous cycle and early pregnancy in mare endometrium. 17th Annual Conference of the European-Societies- Domestic-Animals-Reproduction, SEP 12-14, 2013 Bologna, Italy. Reproduction in Domestic Animals, 48 (S1): A. Guzeloglu S.A. Kayis, E. Kurar, M.O. Atli, S.Aslan, A. Semacan (2013). Expressions of Platelet-activating factors (PAF), PAF receptor (PAF-R) and PAF-acetylhydrolase (PAF-AH) mrnas during the estrous cycle and early pregnancy in equine endometrium. 17th Annual Conference of the European-Societies-Domestic-Animals-Reproduction, SEP 12-14, 2013 Bologna, Italy. Reproduction in Domestic Animals, 48 (S1): 94.  40.HAKKI, S.S., KAYIS, S.A., HAKKI E.E., BOZKURT, B., DURUKSU, G., UNAL, Z.S., KARAOZ, E. (2014). Comparison of mesenchymal stem cells isolated from pulp and periodontal-ligament. 92nd General session & Exhibition of the IADR IADR Africa/Middle East Regional Meeting. https://iadr.confex.com/iadr/14iags/webprogram/paper html 41.Bozkaya, F., Aydilek, N., Atli, M.O., Yildirim, M.E., Kose, M., Guzeloglu, A., Kurar, E., Kayis, S.A., Varisli, O. (2014). Effects of long-term heat stress and dietary restriction on the steroidogenic pathway at mrna level in rat testicular tissue. Conference: 18th Annual Conference of the European-Society-for-Domestic-Animal-Reproduction (ESDAR) Location: Helsinki, FINLAND Date: SEP 11-13, REPRODUCTION IN DOMESTIC ANIMALS Volume: 49 Special Issue: SI Supplement: 3 Pages: Meeting Abstract: P Agaoglu, O.K., Agaoglu, A.R., Guzeloglu, A., Kurar, E., Kayis, S.A., Aslan, S., Schafer-Somi, S. (2014). Evaluation of a subunits of hypoxia inducible factor (HIF) and Vascular Endothelial Growth Factor (VEGF) expressions during pregnancy in domestic cats. Conference: 18th Annual Conference of the European-Society-for-Domestic-Animal-Reproduction (ESDAR) Location: Helsinki, FINLAND Date: SEP 11-13, 2014 REPRODUCTION IN DOMESTIC ANIMALS Volume: 49 Special Issue: SI Supplement: 3 Pages: Meeting Abstract: P Kurar, E., Guzeloglu, A., Atli, M.O., Kayis, S.A., Aslan, S., Semacan, A. (2014). Expressions of peroxisome proliferator activator receptor (PPAR) genes in equine endometrium. Conference: 18th Annual Conference of the European-Society-for-Domestic-Animal- Reproduction (ESDAR) Location: Helsinki, FINLAND Date: SEP 11-13, REPRODUCTION IN DOMESTIC ANIMALS Volume: 49 Special Issue: SI Supplement: 3 Pages: Meeting Abstract: P108.
13  44.Hitit, M., Guzeloglu, A., Ozel, C., Atli, M. O., Kurar, E., and Kayis, S. A. (2015). EXPRESSION OF GENES RELATED TO ENDOMETRIAL RECEPTIVITY IN EQUINE ENDOMETRIUM DURING THE ESTROUS CYCLE AND EARLY PREGNANCY. Proceedings of the Annual Conference of the International Embryo Transfer Society, Versailles, France, January Reprod. Fertil. Dev. 27, Abs DOI: 45.Ozel, C., Guzeloglu, A., Hitit, M., Atli, M. O., Kurar, E., and Kayis, S. A. (2015). EXPRESSION OF PHOSPHOLIPASE A2 ISOFORMS IN EQUINE ENDOMETRIUM DURING THE ESTROUS CYCLE AND EARLY PREGNANCY. Proceedings of the Annual Conference of the International Embryo Transfer Society, Versailles, France, January Reprod. Fertil. Dev. 27(1), Abs DOI: 46.Kiyma, Z., Hitit, M., Ozel, C., Sen, G., Kose, M., Guzeloglu, A., Kaya, M., Atli, M. O., Kurar, E., Kayis, S. A., and Kaya, M. S. (2015). EXPRESSION OF HYALURONAN SYSTEM COMPONENTS IN THE EARLY PREGNANT OVINE ENDOMETRIUM. Proceedings of the Annual Conference of the International Embryo Transfer Society, Versailles, France, January Reprod. Fertil. Dev. 27(1), Abs DOI: Ulusal toplantılarda sunulan bildiriler Yayın kurulunda yer alınılan dergi ve konferanslar Hakemlik yapılan dergi ve konferanslar Projeler PROJECTS I AM INVOLVED 1) Friesian - Jersey Crossbred (FJXB) project. Conducted by Livestock Improvement Corporation, Hamilton, New Zealand. (June September 2003). Position involved: Research Scientist. This project aims to identify genes (quantitative trait loci; QTL/gene), which determine phenotypes in dairy cattle, and detect their location. In this project F2 design is used. The F2 offspring were obtained from mating of New Zealand s outbred Holstein- Friesian and Jersey dairy cattle populations. 2) Characterization of Drug-type Cannabis Genotypes via RAPD-PCR and Evaluation of Statistical Methods in Use. ( ). Supported by Selcuk University, Scientific Research Institute Coordination. Position involved: Project leader. Aims of the project were: 1) to identify relatedness of high number of seized Cannabis samples, provided by Istanbul forensic department, by means of RAPD markers, 2) to evaluate statistical methods used in the phylogenetic analyses of dominant genetic markers.
14 3) Sheep Genomics projects SG204, SG227, and SG-ITT. Conducted by ReproGen Advanced Technologies in Animal Genetics and Reproduction, Faculty of Veterinary Science, University of Sydney, Camden NSW 2570, Australia. (August 2007-August2008). Position involved: Research fellow. This projects aim to identify genes (quantitative trait loci; QTL), which determine phenotypes in Merino sheep. Phenotypic data were available for QTL analysis from Awasi Merino, Indonesian thin tail sheep (ITT) Merino, divergent lines of Merino sheep matings in BC, F2 and daughter designs. 4) The Biometric Identification of the Cattle Breeds in Turkey by Planum Nasolabiale. Conducted by Selcuk University Faculty of Veterinary Medicine. Funded by TUBITAK (1109O331). ( ). Aim of the project was to define reliable, improved identification methods and tracking of animal with minimum error risk, resulting in eradication of many diseases, the control of animal transportation, competitions. In addition, easy solution for the disputes in judicial situations cattle-species animals from seven geographical districts in Turkey and from three cattle breeds (native, culture and crossbreed and equal to each other as possible) were used. Photograph and prints of animals s planum nasolabiales were taken. The differences or resemblances of the shapes were shown statistically according to the morphological methods and biometric-based computer analysis methods to be applied on the pictures or prints of merme or nose part (P.N.), of the cattle. Position involved: Researcher. 5) Investigation of microrna expression profile in relation to pregnancy in equine endometrium. Conducted by Selcuk University Faculty of Veterinary Medicine. Funded by TUBITAK (111O733). ( ). The micrornas (mirna) are 22 nucleotide molecules and are not translated into proteins, however, they play roles in the regulation of gene expressions. Evaluation of uterine mirna profile will help to understand the regulation of posttranscriptional control of endometrial genes which direct the maternal recognition of pregnancy in mares. In this project, the aim was to determine mirna profile by microarray technology in the biopsy samples of mare endometrium, which were collected in the TUBITAK TOVAG 107O035 project. GeneChip mirna 2.0 Array with 361 horse mirna have been used and then confirmation of real-time PCR analysis of selected mirna with significant differences, defined via various statistical approaches, is being performed. The results are expected to add to the understanding of molecular mechanism of early pregnancy and its maternal recognition in mares. Furthermore, the results may help in the development of strategies to increase fertility and will surely introduce new information about mirna into the scientific literature. Position involved: Researcher. 6) Effect of Dietary Omega-3 Fatty Acid on Early Pregnancy in Ewes: Determination of Endometrial Global microrna Expression Profile. Conducted by Eskişehir Osmangazi University, Faculty of Agriculture, Department of Animal Science. Funded by TUBITAK (112R022). ( ). In this study, it is aimed to determine dietary fatty acids on fatty acid accumulation in endometrium, liver and fatty tissues and to determine the mirna expression profiles by using microarray technology in endometrial tissue samples of the sheep fed a ration flax seed oil rich in omega-3 fatty acids or carbohydrates during early pregnancy or on the day 13 of the cycle Following the analysis of microarray statistically significant expression profiles mirna molecules will be verified with the Real-Time-PCR analysis. The results of the project will allow the understanding of physiological process responsible for mechanism of recognition and continuation of pregnancy the molecular level. With the outcomes of the project it is expected to pave the way for improvement of the parameters of fertility and embryonic loss reduction and development of potential therapeutic methods and new contributions to the scientific literature. Position involved: Researcher.
15 7) Comparison of the migration of mesenchymal stem cells isolated from different tissues: The effect of basic-fibroblast Growth Factor (b-fgf; FGF2) and Stromal Cell Derived Factor-1 (SDF-1) on the migration of cells. Conducted by Selcuk University Faculty of Dentistry. Funded by TUBITAK (112S587). ( ). Since due to their accessibility, high growth capacity and multipotential, mesenchymal stem cells (MSCs) hold a great promise for clinical applications of tissue regeneration. MSCs migration, proliferation and synthesis of required extracellular matrix in the wound healing area are important cellular events for regeneration. Therefore, the capacity and potentials of the MSCs isolated from different tissue sources should be clarified in order to use in regenerative periodontal therapy. The purpose of this project is to; a) compare migration potentials of the MSCs isolated from human bone marrow, adipose and dental tissues including periodontal ligament and dental pulp from molar and premolar teeth, pulp from deciduous teeth, b) check the effects of basic- Fibroblast Growth Factor (b-fgf) and Stromal Cell-Derived Factor-1 (SDF-1) on the migration potential of the MSCs, c) examine the effects of these factors on the mrna expression of the MSCs with genome-wide expression assay using microarray, d) find candidate genes for migration of the MSCs, and e) confirm data obtained from microarray experiments using Quantitative RT-PCR. Position involved: Researcher. 8) Determination of Non-affected Reference Gene(s) for Maize Grown Under Different Boron Dosages. Supported by Selcuk University, Scientific Research Institute Coordination ( ). Reverse transcription quantitative real time PCR (RT qpcr) is a widely used sensitive method in the gene expression technology. However, its success depends on the reference gene that is used in the normalisation process of the target gene. This projects aims to detect reference gene(s) to be used as house keeping gene(s) in RT qpcr studies of maize grown under different boron doses. Position involved: Project leader. Ödül ve destekler Mesleki üyelikler Dersin Adı Bu Güne Kadar Verdiği, Devam Ettirdiği Dersler Açıklama
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Appendix 2 Molecular Biology Core Curriculum Websites and Other Resources Chapter 1 - The Molecular Basis of Cancer 1. Inside Cancer http://www.insidecancer.org/ From the Dolan DNA Learning Center Cold
Stem cells possess 2 main characteristics: -Long-term self renewal. - They give rise to all types of differentiate cells. Sources of pluripotent stem cells: -The inner cell mass of the blastocyst. - Fetal
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STEM CELL FACTS The ISSCR is an independent, nonproft organization providing a global forum for stem cell research and regenerative medicine. WHAT ARE STEM CELLS? Stem cells are the foundation cells for
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HyStem Hydrogels CELLULAR MATRICES FOR TRANSLATIONAL RESEARCH HyStem Hydrogel Extracellular Matrices Chemically-defined For use in 2D and 3D formats in vitro and in vivo applications Customizable for many
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Demystifying Stem Cells Brent Bost M.D., CPA, MBA, FACOG Disclaimers Author currently serves on Board of Directors of CordTrack Most applications discussed today are not currently FDA approved and are,
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Stem Cells is the main material for building and regeneration of the body Stem cells are not differentiated and can transform to any cell of organism Stem cells are capable of indefinite renewal through