Package R4CDISC. September 5, 2015

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1 Type Package Title Read CDISC Data Files Version 0.4 Date Depends R (>= 3.0.3, XML Author Package R4CDISC September 5, 2015 Maintainer URL CDISC Dataset-XML and Define-XML are used as file format for clinical trial data and metadata respectively. This functions supports reading both Dataset- XML and Define-XML. The Clinical Data Interchange Standards Consortium (CDISC, is a standards developing organization (SDO to develop global standards and innovations regarding medical research and healthcare. License LGPL-3 Suggests testthat NeedsCompilation no Repository CRAN Date/Publication :16:32 R topics documented: R4CDISC-package getct getdlmd getvalmd getvarmd read.dataset.xml Index 7 1

2 2 getct R4CDISC-package Read CDISC data files Details R4CDISC package includs functions for reading Dataset-XML and Define-XML files. Package: R4CDISC Type: Package Version: 0.1 Date: License: LGL-3 R4CDISC package is provide functions to import Dataset-XML and Define-XML. It is supported Dataset-XML ver. 1.0 and Define-XML ver. 2.0 in this package. Author(s Source Maintainer: R4CDISC package includes example files both of Dataset-XML and Define-XML which were obtained from Dataset-XML 1.0 package on CDISC web site. References CDISC Dataset-XML Specification Version 1.0 ( CDISC Define-XML Specification Version 2.0 ( getct Exract Controlled Terminology from Define-XML The getct function supports define.xml version 2.0. define.xml as R dataframe. This function returns controlled terms in getct(

3 getdlmd 3 Character string specifying the file path of define.xml. Author(s define <- system.file("extdata", "ADaM", "define2-0-0-example-adam.xml", CT <- getct(define getdlmd Exract dataset level metadata from Define-XML The getdlmd function supports define.xml version 2.0. getdlmd( Character string specifying the file path of define.xml. Author(s define <- system.file("extdata", "SDTM", "define2-0-0-example-sdtm( xml", DLMD <- getdlmd(define

4 4 getvarmd getvalmd Exract value level metadata from Define-XML The getvalmd function supports Define-XML version 2.0. getvalmd( Character string specifying the file path of Define-XML. Author(s define <- system.file("extdata", "SDTM", "define2-0-0-example-sdtm( xml", ValMD <- getvalmd(define getvarmd Exract variable level metadata from Define-XML The getvarmd function supports Define-XML version 2.0. getvarmd( Character string specifying the file path of Define-XML. Author(s

5 read.dataset.xml 5 define <- system.file("extdata", "ADaM", "define2-0-0-example-adam.xml", VarMD <- getvarmd(define read.dataset.xml Read a Dataset-XML file as a data frame This function returns study data as R dataframe converted from Dataset-XML. read.dataset.xml(dataset_xml, define_xml dataset_xml define_xml Character string specifying the file path of Dataset-XML. Character string specifying the file path of Define-XML. Details Variable types in returned dataframe are converted based on following rule. ODM data type string integer float date time datetime R data type integer double Value This function returns a dataframe. Author(s

6 6 read.dataset.xml define <- system.file("extdata", "SDTM", "define2-0-0-example-sdtm( xml", sds <- system.file("extdata", "SDTM", "dm.xml", DM <- read.dataset.xml(dataset_xml=sds, define_xml=define

7 Index Topic CDISC R4CDISC-package, 2 getct, 2 getdlmd, 3 getvalmd, 4 getvarmd, 4 R4CDISC (R4CDISC-package, 2 R4CDISC-package, 2 read.dataset.xml, 5 7

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